Difference between revisions of "RIBONUCLEOSIDE-DIP-REDUCTI-RXN"

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(Created page with "Category:Metabolite == Metabolite [http://metacyc.org/META/NEW-IMAGE?object=3-5-ADP 3-5-ADP] == * smiles: ** C(C3(C(C(C(N2(C1(=C(C(=NC=N1)N)N=C2)))O3)O)OP(=O)([O-])[O-]))O...")
(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=RIBONUCLEOSIDE-DIP-REDUCTI-RXN RIBONUCLEOSIDE-DIP-REDUCTI-RXN] == * direction: ** LEFT-TO-RIGHT * c...")
 
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[[Category:Metabolite]]
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[[Category:Reaction]]
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== Metabolite [http://metacyc.org/META/NEW-IMAGE?object=3-5-ADP 3-5-ADP] ==
+
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=RIBONUCLEOSIDE-DIP-REDUCTI-RXN RIBONUCLEOSIDE-DIP-REDUCTI-RXN] ==
−
* smiles:
+
* direction:
−
** C(C3(C(C(C(N2(C1(=C(C(=NC=N1)N)N=C2)))O3)O)OP(=O)([O-])[O-]))OP([O-])([O-])=O
+
** LEFT-TO-RIGHT
 
* common name:
 
* common name:
−
** adenosine 3',5'-bisphosphate
+
** ribonucleoside-diphosphate_reductase
−
* inchi key:
+
* ec number:
−
** InChIKey=WHTCPDAXWFLDIH-KQYNXXCUSA-J
+
** [http://enzyme.expasy.org/EC/1.17.4.1 EC-1.17.4.1]
−
* molecular weight:
+
−
** 423.172   
+
 
* Synonym(s):
 
* Synonym(s):
−
** adenosine-3',5'-bisphosphate
 
−
** 3',5'-ADP
 
−
** phosphoadenosine phosphate
 
−
** PAP
 
  
−
== Reaction(s) known to consume the compound ==
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== Reaction Formula ==
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* [[325-BISPHOSPHATE-NUCLEOTIDASE-RXN]]
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* With identifiers:
−
== Reaction(s) known to produce the compound ==
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** 1 [[Ribonucleoside-Diphosphates]][c] '''+''' 1 [[Red-Thioredoxin]][c] '''=>''' 1 [[Ox-Thioredoxin]][c] '''+''' 1 [[Deoxy-Ribonucleoside-Diphosphates]][c] '''+''' 1 [[WATER]][c]
−
* [[RXN-18303]]
+
* With common name(s):
−
* [[RXN-18301]]
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** 1 a ribonucleoside diphosphate[c] '''+''' 1 a reduced thioredoxin[c] '''=>''' 1 an oxidized thioredoxin[c] '''+''' 1 a 2'-deoxyribonucleoside 5'-diphosphate[c] '''+''' 1 H2O[c]
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* [[RXN-10614]]
+
 
−
* [[RXN-10615]]
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== Genes associated with this reaction  ==
−
* [[HOLO-ACP-SYNTH-RXN]]
+
Genes have been associated with this reaction based on different elements listed below.
−
* [[RXN-15889]]
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* Gene: [[Tiso_gene_10617]]
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* [[GALACTOSYLCERAMIDE-SULFOTRANSFERASE-RXN]]
+
** Source: [[annotation-experimental_annotation]]
−
* [[RXN-11059]]
+
*** Assignment: EC-NUMBER
−
* [[RXN-10777]]
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** Source: [[orthology-esiliculosus]]
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* [[ENTDB-RXN]]
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* Gene: [[Tiso_gene_10138]]
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* [[RXN6666-9]]
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** Source: [[orthology-esiliculosus]]
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* [[RXN-10782]]
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* Gene: [[Tiso_gene_9915]]
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* [[RXN-11058]]
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** Source: [[annotation-experimental_annotation]]
−
== Reaction(s) of unknown directionality ==
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*** Assignment: EC-NUMBER
−
* [[RXN-16759]]
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* Gene: [[Tiso_gene_9916]]
−
* [[PAPSPAPtm]]
+
** Source: [[annotation-in-silico_annotation]]
−
* [[PROTEIN-TYROSINE-SULFOTRANSFERASE-RXN]]
+
*** Assignment: EC-NUMBER
−
* [[RXN-15588]]
+
** Source: [[orthology-esiliculosus]]
−
* [[ARYL-SULFOTRANSFERASE-RXN]]
+
== Pathways  ==
−
* [[1.8.4.8-RXN]]
+
== Reconstruction information  ==
−
* [[RXN-15589]]
+
* Category: [[orthology]]
−
* [[RXN-10994]]
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** Source: [[orthology-esiliculosus]]
−
* [[RXN-17203]]
+
*** Tool: [[pantograph]]
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* [[RXN-15587]]
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* Category: [[annotation]]
−
* [[PAPSPAPthr]]
+
** Source: [[annotation-in-silico_annotation]]
 +
*** Tool: [[pathwaytools]]
 +
** Source: [[annotation-experimental_annotation]]
 +
*** Tool: [[pathwaytools]]
 
== External links  ==
 
== External links  ==
−
* CAS : 1053-73-2
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* RHEA:
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* BIGG : pap
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** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=23252 23252]
−
* PUBCHEM:
+
* LIGAND-RXN:
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** [http://pubchem.ncbi.nlm.nih.gov/summary/summary.cgi?cid=23615194 23615194]
+
** [http://www.genome.jp/dbget-bin/www_bget?R04294 R04294]
−
* HMDB : HMDB00061
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* UNIPROT:
−
* LIGAND-CPD:
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** [http://www.uniprot.org/uniprot/P89462 P89462]
−
** [http://www.genome.jp/dbget-bin/www_bget?C00054 C00054]
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** [http://www.uniprot.org/uniprot/Q7M0K8 Q7M0K8]
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* CHEMSPIDER:
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** [http://www.uniprot.org/uniprot/Q91YM8 Q91YM8]
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** [http://www.chemspider.com/Chemical-Structure.19951095.html 19951095]
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** [http://www.uniprot.org/uniprot/P09938 P09938]
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* CHEBI:
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** [http://www.uniprot.org/uniprot/Q8IL94 Q8IL94]
−
** [http://www.ebi.ac.uk/chebi/searchId.do?chebiId=58343 58343]
+
** [http://www.uniprot.org/uniprot/P32984 P32984]
−
* METABOLIGHTS : MTBLC58343
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** [http://www.uniprot.org/uniprot/P50647 P50647]
−
{{#set: smiles=C(C3(C(C(C(N2(C1(=C(C(=NC=N1)N)N=C2)))O3)O)OP(=O)([O-])[O-]))OP([O-])([O-])=O}}
+
** [http://www.uniprot.org/uniprot/P50650 P50650]
−
{{#set: common name=adenosine 3',5'-bisphosphate}}
+
** [http://www.uniprot.org/uniprot/P50620 P50620]
−
{{#set: inchi key=InChIKey=WHTCPDAXWFLDIH-KQYNXXCUSA-J}}
+
** [http://www.uniprot.org/uniprot/O83972 O83972]
−
{{#set: molecular weight=423.172    }}
+
** [http://www.uniprot.org/uniprot/P43755 P43755]
−
{{#set: common name=adenosine-3',5'-bisphosphate|3',5'-ADP|phosphoadenosine phosphate|PAP}}
+
** [http://www.uniprot.org/uniprot/Q9PJ87 Q9PJ87]
−
{{#set: consumed by=325-BISPHOSPHATE-NUCLEOTIDASE-RXN}}
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** [http://www.uniprot.org/uniprot/P39452 P39452]
−
{{#set: produced by=RXN-18303|RXN-18301|RXN-10614|RXN-10615|HOLO-ACP-SYNTH-RXN|RXN-15889|GALACTOSYLCERAMIDE-SULFOTRANSFERASE-RXN|RXN-11059|RXN-10777|ENTDB-RXN|RXN6666-9|RXN-10782|RXN-11058}}
+
** [http://www.uniprot.org/uniprot/O66503 O66503]
−
{{#set: reversible reaction associated=RXN-16759|PAPSPAPtm|PROTEIN-TYROSINE-SULFOTRANSFERASE-RXN|RXN-15588|ARYL-SULFOTRANSFERASE-RXN|1.8.4.8-RXN|RXN-15589|RXN-10994|RXN-17203|RXN-15587|PAPSPAPthr}}
+
** [http://www.uniprot.org/uniprot/Q9JU45 Q9JU45]
 +
** [http://www.uniprot.org/uniprot/P47473 P47473]
 +
** [http://www.uniprot.org/uniprot/P37146 P37146]
 +
** [http://www.uniprot.org/uniprot/O26748 O26748]
 +
** [http://www.uniprot.org/uniprot/O28609 O28609]
 +
** [http://www.uniprot.org/uniprot/Q9PIR3 Q9PIR3]
 +
** [http://www.uniprot.org/uniprot/Q9JU43 Q9JU43]
 +
** [http://www.uniprot.org/uniprot/P55982 P55982]
 +
** [http://www.uniprot.org/uniprot/P03190 P03190]
 +
** [http://www.uniprot.org/uniprot/P00452 P00452]
 +
** [http://www.uniprot.org/uniprot/P69924 P69924]
 +
** [http://www.uniprot.org/uniprot/P07201 P07201]
 +
** [http://www.uniprot.org/uniprot/P26713 P26713]
 +
** [http://www.uniprot.org/uniprot/P11158 P11158]
 +
** [http://www.uniprot.org/uniprot/P11157 P11157]
 +
** [http://www.uniprot.org/uniprot/P23921 P23921]
 +
** [http://www.uniprot.org/uniprot/P31350 P31350]
 +
** [http://www.uniprot.org/uniprot/Q60561 Q60561]
 +
** [http://www.uniprot.org/uniprot/Q03604 Q03604]
 +
** [http://www.uniprot.org/uniprot/P37426 P37426]
 +
** [http://www.uniprot.org/uniprot/P17424 P17424]
 +
** [http://www.uniprot.org/uniprot/P36602 P36602]
 +
** [http://www.uniprot.org/uniprot/P36603 P36603]
 +
** [http://www.uniprot.org/uniprot/P50643 P50643]
 +
** [http://www.uniprot.org/uniprot/P50645 P50645]
 +
** [http://www.uniprot.org/uniprot/Q66662 Q66662]
 +
** [http://www.uniprot.org/uniprot/Q66663 Q66663]
 +
** [http://www.uniprot.org/uniprot/P49723 P49723]
 +
** [http://www.uniprot.org/uniprot/P50651 P50651]
 +
** [http://www.uniprot.org/uniprot/P78027 P78027]
 +
** [http://www.uniprot.org/uniprot/P74240 P74240]
 +
** [http://www.uniprot.org/uniprot/O36410 O36410]
 +
** [http://www.uniprot.org/uniprot/O36411 O36411]
 +
** [http://www.uniprot.org/uniprot/P49730 P49730]
 +
** [http://www.uniprot.org/uniprot/Q89941 Q89941]
 +
** [http://www.uniprot.org/uniprot/Q98526 Q98526]
 +
** [http://www.uniprot.org/uniprot/O41111 O41111]
 +
** [http://www.uniprot.org/uniprot/Q9YMK7 Q9YMK7]
 +
** [http://www.uniprot.org/uniprot/Q9YMI1 Q9YMI1]
 +
** [http://www.uniprot.org/uniprot/Q9YMI0 Q9YMI0]
 +
** [http://www.uniprot.org/uniprot/O57175 O57175]
 +
** [http://www.uniprot.org/uniprot/O39262 O39262]
 +
** [http://www.uniprot.org/uniprot/O39263 O39263]
 +
** [http://www.uniprot.org/uniprot/Q9YTK7 Q9YTK7]
 +
** [http://www.uniprot.org/uniprot/Q9YTK6 Q9YTK6]
 +
** [http://www.uniprot.org/uniprot/Q9UW15 Q9UW15]
 +
** [http://www.uniprot.org/uniprot/Q9SJ20 Q9SJ20]
 +
** [http://www.uniprot.org/uniprot/P03175 P03175]
 +
** [http://www.uniprot.org/uniprot/P09247 P09247]
 +
** [http://www.uniprot.org/uniprot/P09248 P09248]
 +
** [http://www.uniprot.org/uniprot/P28847 P28847]
 +
** [http://www.uniprot.org/uniprot/P28846 P28846]
 +
** [http://www.uniprot.org/uniprot/P69520 P69520]
 +
** [http://www.uniprot.org/uniprot/Q01319 Q01319]
 +
** [http://www.uniprot.org/uniprot/P10224 P10224]
 +
** [http://www.uniprot.org/uniprot/P16782 P16782]
 +
** [http://www.uniprot.org/uniprot/P20503 P20503]
 +
** [http://www.uniprot.org/uniprot/P26685 P26685]
 +
** [http://www.uniprot.org/uniprot/P12848 P12848]
 +
{{#set: direction=LEFT-TO-RIGHT}}
 +
{{#set: common name=ribonucleoside-diphosphate_reductase}}
 +
{{#set: ec number=EC-1.17.4.1}}
 +
{{#set: gene associated=Tiso_gene_10617|Tiso_gene_10138|Tiso_gene_9915|Tiso_gene_9916}}
 +
{{#set: in pathway=}}
 +
{{#set: reconstruction category=orthology|annotation}}
 +
{{#set: reconstruction source=annotation-in-silico_annotation|annotation-experimental_annotation|orthology-esiliculosus}}
 +
{{#set: reconstruction tool=pantograph|pathwaytools}}

Latest revision as of 20:20, 21 March 2018

Reaction RIBONUCLEOSIDE-DIP-REDUCTI-RXN

  • direction:
    • LEFT-TO-RIGHT
  • common name:
    • ribonucleoside-diphosphate_reductase
  • ec number:
  • Synonym(s):

Reaction Formula

Genes associated with this reaction

Genes have been associated with this reaction based on different elements listed below.

Pathways

Reconstruction information

External links





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