Difference between revisions of "RXN-13615"

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(Created page with "Category:Gene == Gene Tiso_gene_19480 == * right end position: ** 2116 * transcription direction: ** POSITIVE * left end position: ** 87 * centisome position: ** 3.8007863...")
(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-13615 RXN-13615] == * direction: ** LEFT-TO-RIGHT * common name: ** acyl-coenzyme_a_oxidase **...")
 
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[[Category:Gene]]
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[[Category:Reaction]]
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== Gene Tiso_gene_19480 ==
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== Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-13615 RXN-13615] ==
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* right end position:
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* direction:
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** 2116
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** LEFT-TO-RIGHT
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* transcription direction:
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* common name:
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** POSITIVE
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** acyl-coenzyme_a_oxidase
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* left end position:
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** ORF
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** 87
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** acyl-CoA_dehydrogenase
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* centisome position:
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** acyl-_dehydrogenase
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** 3.8007863   
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* ec number:
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** [http://enzyme.expasy.org/EC/1.3.8.7 EC-1.3.8.7]
 
* Synonym(s):
 
* Synonym(s):
  
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== Reactions associated ==
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== Reaction Formula ==
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* Reaction: [[G6PI]]
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* With identifiers:
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** Source: [[orthology-creinhardtii]]
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** 1 [[PROTON]][c] '''+''' 1 [[CPD-10267]][c] '''+''' 1 [[ETF-Oxidized]][c] '''=>''' 1 [[T2-DECENOYL-COA]][c] '''+''' 1 [[ETF-Reduced]][c]
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* Reaction: [[GLUCOSE-6-PHOSPHATE-1-EPIMERASE-RXN]]
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* With common name(s):
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** Source: [[orthology-creinhardtii]]
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** 1 H+[c] '''+''' 1 decanoyl-CoA[c] '''+''' 1 an oxidized electron-transfer flavoprotein[c] '''=>''' 1 trans-dec-2-enoyl-CoA[c] '''+''' 1 a reduced electron-transfer flavoprotein[c]
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* Reaction: [[PGIA]]
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** Source: [[orthology-creinhardtii]]
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== Genes associated with this reaction  ==
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* Reaction: [[PGIAh]]
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Genes have been associated with this reaction based on different elements listed below.
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** Source: [[orthology-creinhardtii]]
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* Gene: [[Tiso_gene_18566]]
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* Reaction: [[PGIB]]
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** Source: [[orthology-creinhardtii]]
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* Reaction: [[PGIBh]]
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** Source: [[orthology-creinhardtii]]
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* Reaction: [[PGLUCISOM-RXN]]
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** Source: [[annotation-in-silico_annotation]]
 
** Source: [[annotation-in-silico_annotation]]
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*** Assignment: ec-number
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*** Assignment: EC-NUMBER
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* Gene: [[Tiso_gene_16631]]
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** Source: [[annotation-in-silico_annotation]]
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*** Assignment: EC-NUMBER
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* Gene: [[Tiso_gene_17967]]
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** Source: [[annotation-in-silico_annotation]]
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*** Assignment: EC-NUMBER
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* Gene: [[Tiso_gene_6475]]
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** Source: [[annotation-in-silico_annotation]]
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*** Assignment: EC-NUMBER
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* Gene: [[Tiso_gene_883]]
 
** Source: [[annotation-experimental_annotation]]
 
** Source: [[annotation-experimental_annotation]]
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*** Assignment: ec-number
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*** Assignment: EC-NUMBER
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** Source: [[orthology-esiliculosus]]
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* Gene: [[Tiso_gene_5991]]
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* Reaction: [[R00771]]
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** Source: [[annotation-in-silico_annotation]]
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** Source: [[orthology-synechocystis]]
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*** Assignment: EC-NUMBER
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* Reaction: [[RXN-13720]]
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== Pathways ==
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** Source: [[orthology-esiliculosus]]
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* [[PWY-7094]], fatty acid salvage: [http://metacyc.org/META/NEW-IMAGE?object=PWY-7094 PWY-7094]
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* Reaction: [[RXN-6182]]
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** '''5''' reactions found over '''6''' reactions in the full pathway
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** Source: [[orthology-esiliculosus]]
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== Reconstruction information  ==
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== Pathways associated ==
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* Category: [[annotation]]
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* [[RUMP-PWY]]
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** Source: [[annotation-experimental_annotation]]
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* [[GLYCOLYSIS]]
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*** Tool: [[pathwaytools]]
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* [[PWY-3801]]
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** Source: [[annotation-in-silico_annotation]]
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* [[PWY-7385]]
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*** Tool: [[pathwaytools]]
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* [[P124-PWY]]
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* [[PWY-6142]]
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* [[PWY-5659]]
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* [[PWY-6981]]
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* [[P341-PWY]]
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* [[GLUCONEO-PWY]]
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* [[PWY-7347]]
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* [[PWY66-399]]
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* [[SUCSYN-PWY]]
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* [[UDPNAGSYN-PWY]]
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* [[PWY-621]]
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* [[PWY-622]]
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* [[PWY-5054]]
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* [[PWY-6992]]
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* [[ANAGLYCOLYSIS-PWY]]
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* [[PWY-5384]]
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* [[PWY-7238]]
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* [[PWY-5514]]
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* [[P122-PWY]]
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== External links  ==
 
== External links  ==
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{{#set: right end position=2116}}
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* RHEA:
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{{#set: transcription direction=POSITIVE}}
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** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=28355 28355]
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{{#set: left end position=87}}
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{{#set: direction=LEFT-TO-RIGHT}}
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{{#set: centisome position=3.8007863    }}
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{{#set: common name=acyl-coenzyme_a_oxidase}}
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{{#set: reaction associated=G6PI|GLUCOSE-6-PHOSPHATE-1-EPIMERASE-RXN|PGIA|PGIAh|PGIB|PGIBh|PGLUCISOM-RXN|R00771|RXN-13720|RXN-6182}}
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{{#set: common name=ORF}}
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{{#set: pathway associated=RUMP-PWY|GLYCOLYSIS|PWY-3801|PWY-7385|P124-PWY|PWY-6142|PWY-5659|PWY-6981|P341-PWY|GLUCONEO-PWY|PWY-7347|PWY66-399|SUCSYN-PWY|UDPNAGSYN-PWY|PWY-621|PWY-622|PWY-5054|PWY-6992|ANAGLYCOLYSIS-PWY|PWY-5384|PWY-7238|PWY-5514|P122-PWY}}
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{{#set: common name=acyl-CoA_dehydrogenase}}
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{{#set: common name=acyl-_dehydrogenase}}
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{{#set: ec number=EC-1.3.8.7}}
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{{#set: gene associated=Tiso_gene_18566|Tiso_gene_16631|Tiso_gene_17967|Tiso_gene_6475|Tiso_gene_883|Tiso_gene_5991}}
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{{#set: in pathway=PWY-7094}}
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{{#set: reconstruction category=annotation}}
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{{#set: reconstruction source=annotation-experimental_annotation|annotation-in-silico_annotation}}
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{{#set: reconstruction tool=pathwaytools}}

Latest revision as of 21:22, 21 March 2018

Reaction RXN-13615

  • direction:
    • LEFT-TO-RIGHT
  • common name:
    • acyl-coenzyme_a_oxidase
    • ORF
    • acyl-CoA_dehydrogenase
    • acyl-_dehydrogenase
  • ec number:
  • Synonym(s):

Reaction Formula

  • With identifiers:
  • With common name(s):
    • 1 H+[c] + 1 decanoyl-CoA[c] + 1 an oxidized electron-transfer flavoprotein[c] => 1 trans-dec-2-enoyl-CoA[c] + 1 a reduced electron-transfer flavoprotein[c]

Genes associated with this reaction

Genes have been associated with this reaction based on different elements listed below.

Pathways

  • PWY-7094, fatty acid salvage: PWY-7094
    • 5 reactions found over 6 reactions in the full pathway

Reconstruction information

External links






Retrieved from "http://gem-aureme.irisa.fr/tisogem/index.php?title=RXN-13615&oldid=48203"