Difference between revisions of "Tiso gene 1163"

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(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=ACONITATEDEHYDR-RXN ACONITATEDEHYDR-RXN] == * direction: ** REVERSIBLE * Synonym(s): == Reaction F...")
(Created page with "Category:Gene == Gene Tiso_gene_1163 == * right end position: ** 14054 * transcription direction: ** POSITIVE * left end position: ** 12300 * centisome position: ** 48.240...")
 
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[[Category:Reaction]]
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[[Category:Gene]]
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== Reaction [http://metacyc.org/META/NEW-IMAGE?object=ACONITATEDEHYDR-RXN ACONITATEDEHYDR-RXN] ==
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== Gene Tiso_gene_1163 ==
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* direction:
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* right end position:
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** REVERSIBLE
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** 14054
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* transcription direction:
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** POSITIVE
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* left end position:
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** 12300
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* centisome position:
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** 48.240967   
 
* Synonym(s):
 
* Synonym(s):
  
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== Reaction Formula ==
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== Reactions associated ==
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* With identifiers:
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* Reaction: [[DIACYLGLYKIN-RXN]]
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** 1 [[CIT]][c] '''<=>''' 1 [[CIS-ACONITATE]][c] '''+''' 1 [[WATER]][c]
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** Source: [[annotation-in-silico_annotation]]
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* With common name(s):
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*** Assignment: ec-number
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** 1 citrate[c] '''<=>''' 1 cis-aconitate[c] '''+''' 1 H2O[c]
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* Reaction: [[NAD-KIN-RXN]]
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** Source: [[annotation-in-silico_annotation]]
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== Genes associated with this reaction  ==
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*** Assignment: ec-number
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Genes have been associated with this reaction based on different elements listed below.
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* Reaction: [[RXN3DJ-11417]]
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* Gene: [[Tiso_gene_13007]]
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** Source: [[annotation-experimental_annotation]]
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*** Assignment: EC-NUMBER
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** Source: [[orthology-synechocystis]]
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== Pathways  ==
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* [[PWY-5750]], itaconate biosynthesis: [http://metacyc.org/META/NEW-IMAGE?object=PWY-5750 PWY-5750]
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** '''3''' reactions found over '''4''' reactions in the full pathway
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* [[PWY-5913]], partial TCA cycle (obligate autotrophs): [http://metacyc.org/META/NEW-IMAGE?object=PWY-5913 PWY-5913]
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** '''9''' reactions found over '''11''' reactions in the full pathway
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* [[PWY-6969]], TCA cycle V (2-oxoglutarate:ferredoxin oxidoreductase): [http://metacyc.org/META/NEW-IMAGE?object=PWY-6969 PWY-6969]
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** '''9''' reactions found over '''12''' reactions in the full pathway
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* [[PWY-6549]], L-glutamine biosynthesis III: [http://metacyc.org/META/NEW-IMAGE?object=PWY-6549 PWY-6549]
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** '''6''' reactions found over '''9''' reactions in the full pathway
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* [[PWY-5392]], reductive TCA cycle II: [http://metacyc.org/META/NEW-IMAGE?object=PWY-5392 PWY-5392]
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** '''5''' reactions found over '''12''' reactions in the full pathway
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* [[TCA]], TCA cycle I (prokaryotic): [http://metacyc.org/META/NEW-IMAGE?object=TCA TCA]
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** '''7''' reactions found over '''10''' reactions in the full pathway
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* [[P23-PWY]], reductive TCA cycle I: [http://metacyc.org/META/NEW-IMAGE?object=P23-PWY P23-PWY]
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** '''7''' reactions found over '''12''' reactions in the full pathway
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* [[P105-PWY]], TCA cycle IV (2-oxoglutarate decarboxylase): [http://metacyc.org/META/NEW-IMAGE?object=P105-PWY P105-PWY]
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** '''9''' reactions found over '''11''' reactions in the full pathway
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* [[GLYOXYLATE-BYPASS]], glyoxylate cycle: [http://metacyc.org/META/NEW-IMAGE?object=GLYOXYLATE-BYPASS GLYOXYLATE-BYPASS]
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** '''6''' reactions found over '''6''' reactions in the full pathway
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* [[FERMENTATION-PWY]], mixed acid fermentation: [http://metacyc.org/META/NEW-IMAGE?object=FERMENTATION-PWY FERMENTATION-PWY]
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** '''9''' reactions found over '''16''' reactions in the full pathway
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* [[PWY-6728]], methylaspartate cycle: [http://metacyc.org/META/NEW-IMAGE?object=PWY-6728 PWY-6728]
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** '''11''' reactions found over '''18''' reactions in the full pathway
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* [[REDCITCYC]], TCA cycle VIII (helicobacter): [http://metacyc.org/META/NEW-IMAGE?object=REDCITCYC REDCITCYC]
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** '''6''' reactions found over '''9''' reactions in the full pathway
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* [[PWY-7254]], TCA cycle VII (acetate-producers): [http://metacyc.org/META/NEW-IMAGE?object=PWY-7254 PWY-7254]
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** '''5''' reactions found over '''9''' reactions in the full pathway
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* [[PWY-7124]], ethylene biosynthesis V (engineered): [http://metacyc.org/META/NEW-IMAGE?object=PWY-7124 PWY-7124]
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** '''7''' reactions found over '''10''' reactions in the full pathway
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* [[PWY66-398]], TCA cycle III (animals): [http://metacyc.org/META/NEW-IMAGE?object=PWY66-398 PWY66-398]
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** '''10''' reactions found over '''11''' reactions in the full pathway
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* [[PWY-5690]], TCA cycle II (plants and fungi): [http://metacyc.org/META/NEW-IMAGE?object=PWY-5690 PWY-5690]
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** '''6''' reactions found over '''9''' reactions in the full pathway
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== Reconstruction information  ==
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* Category: [[orthology]]
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** Source: [[orthology-synechocystis]]
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*** Tool: [[pantograph]]
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* Category: [[annotation]]
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** Source: [[annotation-in-silico_annotation]]
 
** Source: [[annotation-in-silico_annotation]]
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*** Tool: [[pathwaytools]]
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*** Assignment: automated-name-match
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** Source: [[annotation-experimental_annotation]]
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* Reaction: [[SPHINGANINE-KINASE-RXN]]
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*** Tool: [[pathwaytools]]
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** Source: [[orthology-creinhardtii]]
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== Pathways associated ==
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* [[PWY3DJ-11470]]
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* [[PWY-7268]]
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* [[PWY-7269]]
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* [[PWY-7817]]
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* [[PWY-5129]]
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* [[PWY-5083]]
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* [[NADPHOS-DEPHOS-PWY-1]]
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* [[PWY-7119]]
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* [[PWY-7039]]
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* [[NADPHOS-DEPHOS-PWY]]
 
== External links  ==
 
== External links  ==
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* RHEA:
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{{#set: right end position=14054}}
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** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=10228 10228]
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{{#set: transcription direction=POSITIVE}}
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* PIR:
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{{#set: left end position=12300}}
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** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=A35544 A35544]
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{{#set: centisome position=48.240967    }}
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** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=A44153 A44153]
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{{#set: reaction associated=DIACYLGLYKIN-RXN|NAD-KIN-RXN|RXN3DJ-11417|SPHINGANINE-KINASE-RXN}}
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** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=A44154 A44154]
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{{#set: pathway associated=PWY3DJ-11470|PWY-7268|PWY-7269|PWY-7817|PWY-5129|PWY-5083|NADPHOS-DEPHOS-PWY-1|PWY-7119|PWY-7039|NADPHOS-DEPHOS-PWY}}
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** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=A47184 A47184]
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** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=A81801 A81801]
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** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=B48642 B48642]
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** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=C64362 C64362]
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** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=C64617 C64617]
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** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=C81356 C81356]
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** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=F64734 F64734]
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** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=F70873 F70873]
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** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=G64875 G64875]
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** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=G69599 G69599]
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** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=G86708 G86708]
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** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=H81775 H81775]
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** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=S17526 S17526]
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** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=S18720 S18720]
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** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=S26403 S26403]
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** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=S49849 S49849]
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** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=S50387 S50387]
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** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=S57528 S57528]
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** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=S57805 S57805]
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** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=S76777 S76777]
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** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=T04693 T04693]
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** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=T04820 T04820]
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** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=T07611 T07611]
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** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=T10101 T10101]
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** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=T52543 T52543]
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* LIGAND-RXN:
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** [http://www.genome.jp/dbget-bin/www_bget?R01325 R01325]
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* UNIPROT:
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** [http://www.uniprot.org/uniprot/P16276 P16276]
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** [http://www.uniprot.org/uniprot/Q01059 Q01059]
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** [http://www.uniprot.org/uniprot/Q9TSA1 Q9TSA1]
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** [http://www.uniprot.org/uniprot/Q9JTI5 Q9JTI5]
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** [http://www.uniprot.org/uniprot/P37032 P37032]
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** [http://www.uniprot.org/uniprot/P81291 P81291]
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** [http://www.uniprot.org/uniprot/Q9PP88 Q9PP88]
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** [http://www.uniprot.org/uniprot/P36683 P36683]
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** [http://www.uniprot.org/uniprot/O53166 O53166]
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** [http://www.uniprot.org/uniprot/P25516 P25516]
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** [http://www.uniprot.org/uniprot/P09339 P09339]
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** [http://www.uniprot.org/uniprot/Q9CHQ5 Q9CHQ5]
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** [http://www.uniprot.org/uniprot/Q9JT05 Q9JT05]
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** [http://www.uniprot.org/uniprot/Q99798 Q99798]
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** [http://www.uniprot.org/uniprot/P28271 P28271]
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** [http://www.uniprot.org/uniprot/P21399 P21399]
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** [http://www.uniprot.org/uniprot/Q42669 Q42669]
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** [http://www.uniprot.org/uniprot/P19414 P19414]
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** [http://www.uniprot.org/uniprot/P20004 P20004]
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** [http://www.uniprot.org/uniprot/P49609 P49609]
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** [http://www.uniprot.org/uniprot/P74582 P74582]
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** [http://www.uniprot.org/uniprot/Q42560 Q42560]
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** [http://www.uniprot.org/uniprot/Q9SZ36 Q9SZ36]
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** [http://www.uniprot.org/uniprot/O04916 O04916]
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{{#set: direction=REVERSIBLE}}
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{{#set: gene associated=Tiso_gene_13007}}
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{{#set: in pathway=PWY-5750|PWY-5913|PWY-6969|PWY-6549|PWY-5392|TCA|P23-PWY|P105-PWY|GLYOXYLATE-BYPASS|FERMENTATION-PWY|PWY-6728|REDCITCYC|PWY-7254|PWY-7124|PWY66-398|PWY-5690}}
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{{#set: reconstruction category=orthology|annotation}}
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{{#set: reconstruction source=annotation-in-silico_annotation|annotation-experimental_annotation|orthology-synechocystis}}
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{{#set: reconstruction tool=pantograph|pathwaytools}}
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Latest revision as of 20:24, 21 March 2018

Gene Tiso_gene_1163

  • right end position:
    • 14054
  • transcription direction:
    • POSITIVE
  • left end position:
    • 12300
  • centisome position:
    • 48.240967
  • Synonym(s):

Reactions associated

Pathways associated

External links

Retrieved from "http://gem-aureme.irisa.fr/tisogem/index.php?title=Tiso_gene_1163&oldid=48537"