Difference between revisions of "RXN-17783"

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(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=PHOSPHORIBULOKINASE-RXN PHOSPHORIBULOKINASE-RXN] == * direction: ** REVERSIBLE * common name: ** ph...")
(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-17783 RXN-17783] == * direction: ** LEFT-TO-RIGHT * common name: ** Acyl-CoA dehydrogenase ** a...")
 
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[[Category:Reaction]]
 
[[Category:Reaction]]
−
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=PHOSPHORIBULOKINASE-RXN PHOSPHORIBULOKINASE-RXN] ==
+
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-17783 RXN-17783] ==
 
* direction:
 
* direction:
−
** REVERSIBLE
+
** LEFT-TO-RIGHT
 
* common name:
 
* common name:
−
** phosphoribulokinase
+
** Acyl-CoA dehydrogenase
 +
** acyl-_dehydrogenase
 +
** acyl-CoA_dehydrogenase
 
* ec number:
 
* ec number:
−
** [http://enzyme.expasy.org/EC/2.7.1.19 EC-2.7.1.19]
+
** [http://enzyme.expasy.org/EC/1.3.8 EC-1.3.8]
 
* Synonym(s):
 
* Synonym(s):
  
 
== Reaction Formula ==
 
== Reaction Formula ==
 
* With identifiers:
 
* With identifiers:
−
** 1 [[RIBULOSE-5P]][c] '''+''' 1 [[ATP]][c] '''<=>''' 1 [[D-RIBULOSE-15-P2]][c] '''+''' 1 [[PROTON]][c] '''+''' 1 [[ADP]][c]
+
** 1 [[ETF-Oxidized]][c] '''+''' 1 [[CPD-15436]][c] '''+''' 1 [[PROTON]][c] '''=>''' 1 [[ETF-Reduced]][c] '''+''' 1 [[CPD0-1162]][c]
 
* With common name(s):
 
* With common name(s):
−
** 1 D-ribulose 5-phosphate[c] '''+''' 1 ATP[c] '''<=>''' 1 D-ribulose-1,5-bisphosphate[c] '''+''' 1 H+[c] '''+''' 1 ADP[c]
+
** 1 an oxidized electron-transfer flavoprotein[c] '''+''' 1 (5Z)-tetradecenoyl-CoA[c] '''+''' 1 H+[c] '''=>''' 1 a reduced electron-transfer flavoprotein[c] '''+''' 1 (2E,5Z)-tetradecenoyl-CoA[c]
  
 
== Genes associated with this reaction  ==
 
== Genes associated with this reaction  ==
 
Genes have been associated with this reaction based on different elements listed below.
 
Genes have been associated with this reaction based on different elements listed below.
−
* Gene: [[Tiso_gene_17637]]
+
* Gene: [[Tiso_gene_5449]]
 
** Source: [[annotation-in-silico_annotation]]
 
** Source: [[annotation-in-silico_annotation]]
−
*** Assignment: EC-NUMBER
+
*** Assignment: AUTOMATED-NAME-MATCH
−
** Source: [[annotation-experimental_annotation]]
+
* Gene: [[Tiso_gene_16631]]
−
*** Assignment: EC-NUMBER
+
** Source: [[annotation-in-silico_annotation]]
−
** Source: [[orthology-athaliana]]
+
*** Assignment: AUTOMATED-NAME-MATCH
−
** Source: [[orthology-athaliana]]
+
* Gene: [[Tiso_gene_8271]]
−
** Source: [[orthology-synechocystis]]
+
** Source: [[annotation-in-silico_annotation]]
−
** Source: [[orthology-esiliculosus]]
+
*** Assignment: AUTOMATED-NAME-MATCH
−
** Source: [[orthology-creinhardtii]]
+
* Gene: [[Tiso_gene_6475]]
 +
** Source: [[annotation-in-silico_annotation]]
 +
*** Assignment: AUTOMATED-NAME-MATCH
 +
* Gene: [[Tiso_gene_8272]]
 +
** Source: [[annotation-in-silico_annotation]]
 +
*** Assignment: AUTOMATED-NAME-MATCH
 +
* Gene: [[Tiso_gene_16113]]
 +
** Source: [[annotation-in-silico_annotation]]
 +
*** Assignment: AUTOMATED-NAME-MATCH
 
== Pathways  ==
 
== Pathways  ==
−
* [[CALVIN-PWY]], Calvin-Benson-Bassham cycle: [http://metacyc.org/META/NEW-IMAGE?object=CALVIN-PWY CALVIN-PWY]
 
−
** '''13''' reactions found over '''13''' reactions in the full pathway
 
−
* [[PWY-5723]], Rubisco shunt: [http://metacyc.org/META/NEW-IMAGE?object=PWY-5723 PWY-5723]
 
−
** '''10''' reactions found over '''10''' reactions in the full pathway
 
 
== Reconstruction information  ==
 
== Reconstruction information  ==
−
* Category: [[orthology]]
 
−
** Source: [[orthology-athaliana]]
 
−
*** Tool: [[pantograph]]
 
−
** Source: [[orthology-creinhardtii]]
 
−
*** Tool: [[pantograph]]
 
−
** Source: [[orthology-synechocystis]]
 
−
*** Tool: [[pantograph]]
 
−
** Source: [[orthology-esiliculosus]]
 
−
*** Tool: [[pantograph]]
 
−
* Category: [[manual]]
 
−
** Source: [[manual-primary_network]]
 
 
* Category: [[annotation]]
 
* Category: [[annotation]]
−
** Source: [[annotation-experimental_annotation]]
 
−
*** Tool: [[pathwaytools]]
 
 
** Source: [[annotation-in-silico_annotation]]
 
** Source: [[annotation-in-silico_annotation]]
 
*** Tool: [[pathwaytools]]
 
*** Tool: [[pathwaytools]]
 
== External links  ==
 
== External links  ==
−
* RHEA:
+
{{#set: direction=LEFT-TO-RIGHT}}
−
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=19365 19365]
+
{{#set: common name=Acyl-CoA dehydrogenase}}
−
* LIGAND-RXN:
+
{{#set: common name=acyl-_dehydrogenase}}
−
** [http://www.genome.jp/dbget-bin/www_bget?R01523 R01523]
+
{{#set: common name=acyl-CoA_dehydrogenase}}
−
* UNIPROT:
+
{{#set: ec number=EC-1.3.8}}
−
** [http://www.uniprot.org/uniprot/P23010 P23010]
+
{{#set: gene associated=Tiso_gene_5449|Tiso_gene_16631|Tiso_gene_8271|Tiso_gene_6475|Tiso_gene_8272|Tiso_gene_16113}}
−
** [http://www.uniprot.org/uniprot/P0AEX5 P0AEX5]
+
{{#set: in pathway=}}
−
** [http://www.uniprot.org/uniprot/P19923 P19923]
+
{{#set: reconstruction category=annotation}}
−
** [http://www.uniprot.org/uniprot/P19924 P19924]
+
{{#set: reconstruction source=annotation-in-silico_annotation}}
−
** [http://www.uniprot.org/uniprot/P23015 P23015]
+
{{#set: reconstruction tool=pathwaytools}}
−
** [http://www.uniprot.org/uniprot/P12033 P12033]
+
−
** [http://www.uniprot.org/uniprot/Q8GRU9 Q8GRU9]
+
−
** [http://www.uniprot.org/uniprot/P09559 P09559]
+
−
** [http://www.uniprot.org/uniprot/P25697 P25697]
+
−
** [http://www.uniprot.org/uniprot/P93681 P93681]
+
−
** [http://www.uniprot.org/uniprot/P19824 P19824]
+
−
** [http://www.uniprot.org/uniprot/P27774 P27774]
+
−
{{#set: direction=REVERSIBLE}}
+
−
{{#set: common name=phosphoribulokinase}}
+
−
{{#set: ec number=EC-2.7.1.19}}
+
−
{{#set: gene associated=Tiso_gene_17637}}
+
−
{{#set: in pathway=CALVIN-PWY|PWY-5723}}
+
−
{{#set: reconstruction category=orthology|manual|annotation}}
+
−
{{#set: reconstruction source=annotation-experimental_annotation|orthology-esiliculosus|annotation-in-silico_annotation|orthology-athaliana|orthology-synechocystis|manual-primary_network|orthology-creinhardtii}}
+
−
{{#set: reconstruction tool=pantograph|pathwaytools}}
+

Latest revision as of 20:25, 21 March 2018

Reaction RXN-17783

  • direction:
    • LEFT-TO-RIGHT
  • common name:
    • Acyl-CoA dehydrogenase
    • acyl-_dehydrogenase
    • acyl-CoA_dehydrogenase
  • ec number:
  • Synonym(s):

Reaction Formula

  • With identifiers:
  • With common name(s):
    • 1 an oxidized electron-transfer flavoprotein[c] + 1 (5Z)-tetradecenoyl-CoA[c] + 1 H+[c] => 1 a reduced electron-transfer flavoprotein[c] + 1 (2E,5Z)-tetradecenoyl-CoA[c]

Genes associated with this reaction

Genes have been associated with this reaction based on different elements listed below.

Pathways

Reconstruction information

External links

Retrieved from "http://gem-aureme.irisa.fr/tisogem/index.php?title=RXN-17783&oldid=48655"