Difference between revisions of "RXN-9500"

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(Created page with "Category:Metabolite == Metabolite [http://metacyc.org/META/NEW-IMAGE?object=RNA-Ligase-L-lysine-adenylate RNA-Ligase-L-lysine-adenylate] == * common name: ** a [DNA ligase...")
 
(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=PRPPSYN-RXN PRPPSYN-RXN] == * direction: ** REVERSIBLE * common name: ** ORF * ec number: ** [http:...")
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[[Category:Metabolite]]
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[[Category:Reaction]]
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== Metabolite [http://metacyc.org/META/NEW-IMAGE?object=RNA-Ligase-L-lysine-adenylate RNA-Ligase-L-lysine-adenylate] ==
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== Reaction [http://metacyc.org/META/NEW-IMAGE?object=PRPPSYN-RXN PRPPSYN-RXN] ==
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* direction:
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** REVERSIBLE
 
* common name:
 
* common name:
−
** a [DNA ligase]-N6-(5'-adenylyl)-L-lysine
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** ORF
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* ec number:
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** [http://enzyme.expasy.org/EC/2.7.6.1 EC-2.7.6.1]
 
* Synonym(s):
 
* Synonym(s):
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** a 5'-adenosyl [RNA ligase]-Nε-phosphono-L-lysine
 
  
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== Reaction(s) known to consume the compound ==
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== Reaction Formula ==
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* [[RXN-17926]]
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* With identifiers:
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== Reaction(s) known to produce the compound ==
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** 1 [[ATP]][c] '''+''' 1 [[RIBOSE-5P]][c] '''<=>''' 1 [[PRPP]][c] '''+''' 1 [[AMP]][c] '''+''' 1 [[PROTON]][c]
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* [[RXN-17925]]
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* With common name(s):
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== Reaction(s) of unknown directionality ==
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** 1 ATP[c] '''+''' 1 D-ribose 5-phosphate[c] '''<=>''' 1 5-phospho-&alpha;-D-ribose 1-diphosphate[c] '''+''' 1 AMP[c] '''+''' 1 H+[c]
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== Genes associated with this reaction  ==
 +
Genes have been associated with this reaction based on different elements listed below.
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* [[Tiso_gene_4677]]
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** EXPERIMENTAL_ANNOTATION
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***EC-NUMBER
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** [[pantograph]]-[[athaliana]]
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** [[pantograph]]-[[synechocystis]]
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** [[pantograph]]-[[esiliculosus]]
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* [[Tiso_gene_3025]]
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** IN-SILICO_ANNOTATION
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***EC-NUMBER
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== Pathways  ==
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* [[PWY0-662]], PRPP biosynthesis I: [http://metacyc.org/META/NEW-IMAGE?object=PWY0-662 PWY0-662]
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** '''1''' reactions found over '''1''' reactions in the full pathway
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== Reconstruction information  ==
 +
* [[orthology]]:
 +
** [[pantograph]]:
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*** [[synechocystis]]
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*** [[esiliculosus]]
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*** [[athaliana]]
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* [[manual]]:
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** [[primary_network]]
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* [[annotation]]:
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** [[pathwaytools]]:
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*** [[experimental_annotation]]
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*** [[in-silico_annotation]]
 
== External links  ==
 
== External links  ==
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{{#set: common name=a [DNA ligase]-N6-(5'-adenylyl)-L-lysine}}
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* RHEA:
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{{#set: common name=a 5'-adenosyl [RNA ligase]-N&epsilon;-phosphono-L-lysine}}
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** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=15609 15609]
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{{#set: consumed by=RXN-17926}}
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* LIGAND-RXN:
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{{#set: produced by=RXN-17925}}
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** [http://www.genome.jp/dbget-bin/www_bget?R01049 R01049]
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* UNIPROT:
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** [http://www.uniprot.org/uniprot/Q63468 Q63468]
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** [http://www.uniprot.org/uniprot/Q9CEI4 Q9CEI4]
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** [http://www.uniprot.org/uniprot/O67556 O67556]
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** [http://www.uniprot.org/uniprot/P44328 P44328]
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** [http://www.uniprot.org/uniprot/Q9PP15 Q9PP15]
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** [http://www.uniprot.org/uniprot/P56184 P56184]
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** [http://www.uniprot.org/uniprot/P65235 P65235]
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** [http://www.uniprot.org/uniprot/Q9CHB8 Q9CHB8]
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** [http://www.uniprot.org/uniprot/P42816 P42816]
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** [http://www.uniprot.org/uniprot/Q59988 Q59988]
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** [http://www.uniprot.org/uniprot/P14193 P14193]
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** [http://www.uniprot.org/uniprot/P0A1V6 P0A1V6]
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** [http://www.uniprot.org/uniprot/P0A717 P0A717]
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** [http://www.uniprot.org/uniprot/P60891 P60891]
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** [http://www.uniprot.org/uniprot/P11908 P11908]
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** [http://www.uniprot.org/uniprot/P21108 P21108]
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** [http://www.uniprot.org/uniprot/P60892 P60892]
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** [http://www.uniprot.org/uniprot/P09330 P09330]
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** [http://www.uniprot.org/uniprot/P32895 P32895]
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** [http://www.uniprot.org/uniprot/Q59489 Q59489]
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** [http://www.uniprot.org/uniprot/P38620 P38620]
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** [http://www.uniprot.org/uniprot/P38063 P38063]
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** [http://www.uniprot.org/uniprot/P38689 P38689]
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** [http://www.uniprot.org/uniprot/Q42581 Q42581]
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** [http://www.uniprot.org/uniprot/P41831 P41831]
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** [http://www.uniprot.org/uniprot/P46585 P46585]
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** [http://www.uniprot.org/uniprot/Q42583 Q42583]
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** [http://www.uniprot.org/uniprot/Q14558 Q14558]
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** [http://www.uniprot.org/uniprot/Q55848 Q55848]
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** [http://www.uniprot.org/uniprot/Q49042 Q49042]
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** [http://www.uniprot.org/uniprot/O64888 O64888]
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** [http://www.uniprot.org/uniprot/Q680A5 Q680A5]
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** [http://www.uniprot.org/uniprot/Q93Z66 Q93Z66]
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{{#set: direction=REVERSIBLE}}
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{{#set: common name=ORF}}
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{{#set: ec number=EC-2.7.6.1}}
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{{#set: gene associated=Tiso_gene_4677|Tiso_gene_3025}}
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{{#set: in pathway=PWY0-662}}
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{{#set: reconstruction category=orthology}}
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{{#set: reconstruction tool=pantograph}}
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{{#set: reconstruction source=synechocystis|esiliculosus|athaliana}}
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{{#set: reconstruction category=manual}}
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{{#set: reconstruction source=primary_network}}
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{{#set: reconstruction category=annotation}}
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{{#set: reconstruction tool=pathwaytools}}
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{{#set: reconstruction source=experimental_annotation|in-silico_annotation}}

Revision as of 15:39, 10 January 2018

Reaction PRPPSYN-RXN

  • direction:
    • REVERSIBLE
  • common name:
    • ORF
  • ec number:
  • Synonym(s):

Reaction Formula

  • With identifiers:
  • With common name(s):
    • 1 ATP[c] + 1 D-ribose 5-phosphate[c] <=> 1 5-phospho-α-D-ribose 1-diphosphate[c] + 1 AMP[c] + 1 H+[c]

Genes associated with this reaction

Genes have been associated with this reaction based on different elements listed below.

Pathways

  • PWY0-662, PRPP biosynthesis I: PWY0-662
    • 1 reactions found over 1 reactions in the full pathway

Reconstruction information

External links







Retrieved from "http://gem-aureme.irisa.fr/tisogem/index.php?title=RXN-9500&oldid=9905"