TRNA-PSEUDOURIDINE-SYNTHASE-I-RXN

Reaction TRNA-PSEUDOURIDINE-SYNTHASE-I-RXN

• direction:
  • LEFT-TO-RIGHT
• common name:
  • drap_deaminase
  • pseudouridine_synthase_family_protein
  • ORF
  • pseudouridine_synthase
  • Transmembrane_protein
  • trna-pseudouridine_synthasei
  • ribosomal_large_subunit_pseudouridine_synthase_d
  • trna_pseudouridinesynthase
  • trna_pseudouridine_synthase
  • pseudouridylate_synthase
  • pseudouridine_synthase_rlu_family_protein
  • protein_pus7
  • trna_pseudouridine_synthase_a
  • pseudouridine
  • rna_pseudouridylate_synthase_domain-containing_protein_1
  • pseudouridine_synthase_1-like_protein
  • trna_pseudouridine_synthase_d
• ec number:
  • EC-5.4.99.12
• Synonym(s):

Reaction Formula

• With identifiers:
  • 1 tRNA-uridine-38-40[c] => 1 tRNA-pseudouridine-38-40[c]
• With common name(s):
  • 1 a uridine38-40 in tRNA[c] => 1 a pseudouridine38-40 in tRNA[c]

Genes associated with this reaction

Genes have been associated with this reaction based on different elements listed below.

• Gene: Tiso_gene_3154
  • Source: annotation-in-silico_annotation
    • Assignment: EC-NUMBER
• Gene: Tiso_gene_17798
  • Source: annotation-in-silico_annotation
    • Assignment: EC-NUMBER
• Gene: Tiso_gene_15274
  • Source: annotation-in-silico_annotation
    • Assignment: EC-NUMBER
• Gene: Tiso_gene_5651
  • Source: orthology-esiliculosus
• Gene: Tiso_gene_1134
  • Source: annotation-in-silico_annotation
    • Assignment: EC-NUMBER
• Gene: Tiso_gene_18936
  • Source: annotation-in-silico_annotation
    • Assignment: EC-NUMBER
  • Source: orthology-esiliculosus
• Gene: Tiso_gene_4020
  • Source: annotation-in-silico_annotation
    • Assignment: EC-NUMBER
• Gene: Tiso_gene_2851
  • Source: annotation-in-silico_annotation
    • Assignment: EC-NUMBER
• Gene: Tiso_gene_7584
  • Source: annotation-in-silico_annotation
    • Assignment: EC-NUMBER
• Gene: Tiso_gene_11913
  • Source: annotation-in-silico_annotation
    • Assignment: AUTOMATED-NAME-MATCH
  • Source: annotation-experimental_annotation
    • Assignment: AUTOMATED-NAME-MATCH
  • Source: orthology-esiliculosus
• Gene: Tiso_gene_582
  • Source: annotation-in-silico_annotation
    • Assignment: EC-NUMBER
• Gene: Tiso_gene_9833
  • Source: annotation-in-silico_annotation
    • Assignment: EC-NUMBER
• Gene: Tiso_gene_17799
  • Source: annotation-in-silico_annotation
    • Assignment: EC-NUMBER
• Gene: Tiso_gene_18988
  • Source: annotation-in-silico_annotation
    • Assignment: EC-NUMBER
  • Source: orthology-esiliculosus
• Gene: Tiso_gene_16656
  • Source: orthology-esiliculosus
• Gene: Tiso_gene_18959
  • Source: annotation-in-silico_annotation
    • Assignment: EC-NUMBER
  • Source: orthology-esiliculosus
• Gene: Tiso_gene_178
  • Source: annotation-in-silico_annotation
    • Assignment: EC-NUMBER
• Gene: Tiso_gene_11842
  • Source: annotation-in-silico_annotation
    • Assignment: EC-NUMBER
• Gene: Tiso_gene_10567
  • Source: annotation-in-silico_annotation
    • Assignment: EC-NUMBER
• Gene: Tiso_gene_12093
  • Source: annotation-in-silico_annotation
    • Assignment: EC-NUMBER
• Gene: Tiso_gene_18184
  • Source: annotation-in-silico_annotation
    • Assignment: EC-NUMBER
• Gene: Tiso_gene_1548
  • Source: annotation-in-silico_annotation
    • Assignment: EC-NUMBER
• Gene: Tiso_gene_17745
  • Source: annotation-in-silico_annotation
    • Assignment: EC-NUMBER
• Gene: Tiso_gene_4703
  • Source: annotation-in-silico_annotation
    • Assignment: EC-NUMBER
• Gene: Tiso_gene_2850
  • Source: annotation-in-silico_annotation
    • Assignment: EC-NUMBER
• Gene: Tiso_gene_2988
  • Source: annotation-in-silico_annotation
    • Assignment: EC-NUMBER
• Gene: Tiso_gene_19667
  • Source: annotation-in-silico_annotation
    • Assignment: EC-NUMBER
  • Source: orthology-esiliculosus
• Gene: Tiso_gene_13557
  • Source: annotation-in-silico_annotation
    • Assignment: EC-NUMBER
  • Source: orthology-esiliculosus
• Gene: Tiso_gene_18028
  • Source: annotation-in-silico_annotation
    • Assignment: EC-NUMBER
• Gene: Tiso_gene_18987
  • Source: orthology-esiliculosus
• Gene: Tiso_gene_16727
  • Source: annotation-in-silico_annotation
    • Assignment: EC-NUMBER
  • Source: orthology-esiliculosus
• Gene: Tiso_gene_5234
  • Source: annotation-in-silico_annotation
    • Assignment: EC-NUMBER
  • Source: orthology-esiliculosus
• Gene: Tiso_gene_19622
  • Source: annotation-in-silico_annotation
    • Assignment: AUTOMATED-NAME-MATCH
  • Source: annotation-experimental_annotation
    • Assignment: AUTOMATED-NAME-MATCH
  • Source: orthology-esiliculosus
• Gene: Tiso_gene_3970
  • Source: annotation-in-silico_annotation
    • Assignment: EC-NUMBER
• Gene: Tiso_gene_3166
  • Source: annotation-in-silico_annotation
    • Assignment: EC-NUMBER
• Gene: Tiso_gene_12635
  • Source: annotation-in-silico_annotation
    • Assignment: EC-NUMBER
  • Source: orthology-esiliculosus
• Gene: Tiso_gene_7417
  • Source: annotation-in-silico_annotation
    • Assignment: EC-NUMBER
  • Source: orthology-esiliculosus
• Gene: Tiso_gene_4021
  • Source: annotation-in-silico_annotation
    • Assignment: EC-NUMBER

Reconstruction information

• Category: orthology
  • Source: orthology-esiliculosus
    • Tool: pantograph
• Category: annotation
  • Source: annotation-experimental_annotation
    • Tool: pathwaytools
  • Source: annotation-in-silico_annotation
    • Tool: pathwaytools

External links

• LIGAND-RXN:
  • R03020
• UNIPROT:
  • Q59069
  • P47428
  • P45291
  • Q45557
  • Q50291
  • P53167
  • Q12211
  • P73295
  • P07649