TRNA-Dihydrouridines

Automatic reconstruction with AuReMe

The automatic reconstruction of Tisocrysis_lutea results to a Genome scale Model containing 2800 reactions, 2746 metabolites, 2728 genes and 1213 pathways. This GeM was obtained based on the following sources:

• Based on annotation data:
  • Tool: Pathway tools
    • Creation of a metabolic network containing 2568 reactions
• Based on orthology data:
  • Tool: Pantograph
    • From template CREINHARDTII creation of a metabolic network containing: 558 reactions
    • From template SYNECHOCYSTIS creation of a metabolic network containing: 260 reactions
    • From template ATHALIANA creation of a metabolic network containing: 419 reactions
    • From template ESILICULOSUS creation of a metabolic network containing: 1191 reactions
• Based on expertise:
  • • 314 reaction(s) added
• Based on gap-filling:
  • Tool: meneco
    • 21 reaction(s) added

Collaborative curation

• Suggest reactions to add or remove:
  • Download this from
• Suggest new reactions to create and add:
  • Download this form
• Follow the examples given in the form to correctly share your suggestions
• Send the completed form(s) to: CONTACT_MAIL