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	Common name	Ec number	Reconstruction category	Reconstruction tool	Reconstruction source	Gene associated	In pathway
1.18.1.2-RXN	Ferredoxin--nadp embryochloroplastic Ferredoxin--nadp root isozyme chloroplastic	EC-1.18.1.2	Orthology Manual Annotation	Pantograph Pathwaytools	Annotation-in-silico annotation Manual-primary network Annotation-experimental annotation Orthology-esiliculosus	Tiso gene 20054 Tiso gene 19031 Tiso gene 17381 Tiso gene 17170 Tiso gene 20055 Tiso gene 20168	PWY-7230 PWY-101
1.2.1.13-RXN	Glyceraldehyde-3-phosphate dehydrogenase	EC-1.2.1.13	Manual Annotation	Pathwaytools	Annotation-in-silico annotation Manual-primary network Annotation-experimental annotation	Tiso gene 6765 Tiso gene 20000 Tiso gene 10646 Tiso gene 6766	CALVIN-PWY
1.2.1.25-RXN	3-methyl-2-oxobutanoate dehydrogenase	EC-1.2.1.25	Annotation	Pathwaytools	Annotation-experimental annotation Annotation-in-silico annotation	Tiso gene 11793 Tiso gene 3260	VALDEG-PWY
1.2.1.27-RXN	Methylmalonate-semialdehyde dehydrogenase	EC-1.2.1.27	Orthology Annotation	Pantograph Pathwaytools	Annotation-in-silico annotation Orthology-esiliculosus	Tiso gene 11323	PWY-5642
1.2.1.31-RXN	Polyketide synthase ORF	EC-1.2.1.31	Annotation	Pathwaytools	Annotation-in-silico annotation	Tiso gene 6563 Tiso gene 16719 Tiso gene 5425 Tiso gene 5424 Tiso gene 6562	LYSINE-DEG1-PWY
1.2.1.65-RXN		EC-1.2.1.65	Annotation	Pathwaytools	Annotation-in-silico annotation		PWY-5427
1.2.4.4-RXN	3-methyl-2-oxobutanoate dehydrogenase 2-oxoisovalerate dehydrogenase alpha subunit mitochondrial	EC-1.2.4.4	Orthology Annotation	Pantograph Pathwaytools	Annotation-experimental annotation Annotation-in-silico annotation Orthology-esiliculosus	Tiso gene 18084 Tiso gene 11793 Tiso gene 3260	PWY-5046
1.3.1.20-RXN	Dihydrodiol dehydrogenase	EC-1.3.1.20	Annotation	Pathwaytools	Annotation-in-silico annotation	Tiso gene 10406
1.3.99.23-RXN	Carotenoid isomerase Carotene isomerase Fad nad -binding oxidoreductase domain-containing protein Carotenoid isomerase-like protein All-trans- -dihydroretinol saturase ORF	EC-1.3.99.23	Annotation	Pathwaytools	Annotation-in-silico annotation	Tiso gene 13369 Tiso gene 9534 Tiso gene 3092 Tiso gene 917 Tiso gene 13367 Tiso gene 16795 Tiso gene 16794
1.3.99.5-RXN	3-oxo-5-alpha-steroid 4-dehydrogenase	EC-1.3.1.22	Annotation	Pathwaytools	Annotation-in-silico annotation	Tiso gene 14327
1.5.1.20-RXN	Methylenetetrahydrofolate reductase -methylenetetrahydrofolate reductase	EC-1.5.1.20	Orthology Manual Annotation	Pantograph Pathwaytools	Annotation-in-silico annotation Manual-primary network Annotation-experimental annotation Orthology-esiliculosus	Tiso gene 16954 Tiso gene 14582	PWY-2201 1CMET2-PWY CODH-PWY PWY-3841
1.5.1.8-RXN		EC-1.5.1.8	Orthology Annotation	Pantograph Pathwaytools	Orthology-athaliana Annotation-in-silico annotation	Tiso gene 1156	LYSINE-DEG1-PWY
1.5.1.9-RXN	Saccharopine dehydrogenase	EC-1.5.1.9	Orthology Annotation	Pantograph Pathwaytools	Orthology-athaliana Annotation-in-silico annotation Orthology-esiliculosus	Tiso gene 9366 Tiso gene 7038 Tiso gene 7039 Tiso gene 4160 Tiso gene 10095 Tiso gene 1156	LYSINE-DEG1-PWY
1.6.4.4-RXN	Nucleoredoxin ORF	EC-1.8.1.8	Annotation	Pathwaytools	Annotation-in-silico annotation	Tiso gene 475 Tiso gene 15704
1.8.4.12-RXN	Peptide methionine-r-sulfoxide reductase ORF Methionine sulfoxide reductase with associated domain Methionine sulfoxide reductase b	EC-1.8.4.12	Orthology Annotation	Pantograph Pathwaytools	Annotation-in-silico annotation Orthology-esiliculosus	Tiso gene 16975 Tiso gene 6049 Tiso gene 18058 Tiso gene 14455 Tiso gene 19578
1.8.4.14-RXN	Peptide methionine-r-sulfoxide reductase	EC-1.8.4.14	Annotation	Pathwaytools	Annotation-in-silico annotation	Tiso gene 19578
13-BETA-GLUCAN-SYNTHASE-RXN	-beta-glucan synthase component gls2 Callose synthase Callose Beta-glucan synthesis-associated	EC-2.4.1.34	Orthology Annotation	Pantograph Pathwaytools	Annotation-in-silico annotation Annotation-experimental annotation Orthology-esiliculosus	Tiso gene 7603 Tiso gene 5462 Tiso gene 7967 Tiso gene 7966 Tiso gene 3322 Tiso gene 5460	PWY-6773
14-LACTONASE-RXN	Gluconolactonase	EC-3.1.1.25	Annotation	Pathwaytools	Annotation-in-silico annotation	Tiso gene 1948 Tiso gene 1947
1TRANSKETO-RXN	Transketolase	EC-2.2.1.1	Orthology Manual Annotation	Pantograph Pathwaytools	Annotation-in-silico annotation Manual-primary network Orthology-athaliana Annotation-experimental annotation Orthology-synechocystis	Tiso gene 5008 Tiso gene 11559	P124-PWY CALVIN-PWY P21-PWY PWY-5723 PWY-1861 P185-PWY NONOXIPENT-PWY
2-AMINOADIPATE-AMINOTRANSFERASE-RXN		EC-2.6.1.39	Annotation	Pathwaytools	Annotation-in-silico annotation		PWY-3081 PWY-5283 LYSINE-AMINOAD-PWY LYSINE-DEG1-PWY PWY66-425
2-DEHYDROPANTOATE-REDUCT-RXN	2-dehydropantoate 2-reductase	EC-1.1.1.169	Orthology Annotation	Pantograph Pathwaytools	Annotation-in-silico annotation Orthology-synechocystis	Tiso gene 16426 Tiso gene 10174 Tiso gene 12761 Tiso gene 10173 Tiso gene 12762 Tiso gene 9392	PANTO-PWY PWY-6654
2-HALOACID-DEHALOGENASE-RXN	Had family hydrolase	EC-3.8.1.10 EC-3.8.1.2	Annotation	Pathwaytools	Annotation-in-silico annotation	Tiso gene 3200
2-ISOPROPYLMALATESYN-RXN	2-isopropylmalate synthase chloroplastic	EC-2.3.3.13	Orthology Manual Annotation	Pantograph Pathwaytools	Annotation-experimental annotation Orthology-esiliculosus Annotation-in-silico annotation Orthology-athaliana Orthology-synechocystis Manual-primary network Orthology-creinhardtii	Tiso gene 11453	LEUSYN-PWY PWY-6871
2-KETO-ADIPATE-DEHYDROG-RXN			Orthology Annotation	Pantograph Pathwaytools	Orthology-athaliana Annotation-in-silico annotation	Tiso gene 9330 Tiso gene 10209	PWY-5652 PWY66-425 LYSINE-DEG1-PWY
2-OCTAPRENYL-6-OHPHENOL-METHY-RXN	2-octaprenyl-6-hydroxyphenyl methylase 3-demethylubiquinone-9 3-methyltransferase	EC-2.1.1.222	Annotation	Pathwaytools	Annotation-in-silico annotation	Tiso gene 6943	PWY-6708
2.1.1.109-RXN	O-methyltransferase i	EC-2.1.1.109	Annotation	Pathwaytools	Annotation-in-silico annotation	Tiso gene 20416	PWY-5956
2.1.1.127-RXN	Ribulose- bisphosphate carboxylase oxygenase large subunit n- chloropl	EC-2.1.1.127	Annotation	Pathwaytools	Annotation-in-silico annotation	Tiso gene 6151
2.1.1.137-RXN	ORF	EC-2.1.1.137	Annotation	Pathwaytools	Annotation-in-silico annotation	Tiso gene 16361	PWY-4202
2.1.1.138-RXN	ORF	EC-2.1.1.137	Annotation	Pathwaytools	Annotation-in-silico annotation	Tiso gene 16361	PWY-4202
2.1.1.143-RXN	Sterol methyltransferase	EC-2.1.1.143	Annotation	Pathwaytools	Annotation-in-silico annotation	Tiso gene 11850 Tiso gene 11849	PWY-2541
2.1.1.63-RXN	Heat shock 40 kda protein Domain-containing protein	EC-2.1.1.63	Annotation	Pathwaytools	Annotation-in-silico annotation	Tiso gene 12990 Tiso gene 12732
2.1.1.77-RXN	ORF L-isoaspartyl proteincarboxylmethyltransferase	EC-2.1.1.77	Orthology Annotation	Pantograph Pathwaytools	Annotation-in-silico annotation Orthology-esiliculosus	Tiso gene 16936 Tiso gene 12221 Tiso gene 16935 Tiso gene 6376
2.3.1.118-RXN	Arylamine n-acetyltransferase	EC-2.3.1.118	Annotation	Pathwaytools	Annotation-in-silico annotation Annotation-experimental annotation	Tiso gene 9942
2.3.1.155-RXN		EC-2.3.1.155	Annotation	Pathwaytools	Annotation-experimental annotation Annotation-in-silico annotation		PWY-7654 PWY-7656
2.3.1.165-RXN	Polyketide synthase	EC-2.3.1.165	Annotation	Pathwaytools	Annotation-in-silico annotation	Tiso gene 136 Tiso gene 13394 Tiso gene 10876 Tiso gene 500 Tiso gene 135	PWY-7490
2.3.1.168-RXN	3-methyl-2-oxobutanoate dehydrogenase	EC-2.3.1.168	Annotation	Pathwaytools	Annotation-experimental annotation Annotation-in-silico annotation	Tiso gene 11793 Tiso gene 3260	PWY-5046
2.3.1.179-RXN	3-oxoacyl-(acyl-carrier-protein) synthase ORF	EC-2.3.1.179	Annotation	Pathwaytools	Annotation-in-silico annotation Annotation-experimental annotation	Tiso gene 19302 Tiso gene 19303 Tiso gene 14485	PWY-5973
2.3.1.180-RXN	3-oxoacyl-(acyl-carrier-protein) synthase	EC-2.3.1.180	Annotation	Pathwaytools	Annotation-experimental annotation Annotation-in-silico annotation	Tiso gene 15991	PWY-4381
2.3.1.41-RXN	3-oxoacyl-synthase	EC-2.3.1.41	Orthology Annotation	Pantograph Pathwaytools	Annotation-experimental annotation Annotation-in-silico annotation Orthology-esiliculosus	Tiso gene 9885 Tiso gene 15991 Tiso gene 19302 Tiso gene 5939 Tiso gene 13083 Tiso gene 14485
2.3.1.43-RXN	Phosphatidylcholine-sterol o-acyltransferase	EC-2.3.1.43	Annotation	Pathwaytools	Annotation-in-silico annotation	Tiso gene 9096 Tiso gene 16209
2.3.1.97-RXN	Glycylpeptide n-tetradecanoyltransferase ORF	EC-2.3.1.97	Orthology Annotation	Pantograph Pathwaytools	Annotation-in-silico annotation Orthology-esiliculosus	Tiso gene 8573 Tiso gene 17259 Tiso gene 11266
2.3.2.15-RXN	Phytochelatins synthase ORF	EC-2.3.2.15	Orthology Annotation	Pantograph Pathwaytools	Annotation-in-silico annotation Orthology-esiliculosus	Tiso gene 9670 Tiso gene 9671 Tiso gene 17830 Tiso gene 12647	PWY-6745
2.4.1.117-RXN	Udp-glucose--undecaprenyl-phosphate glucosyltransferase	EC-2.4.1.117	Orthology Annotation	Pantograph Pathwaytools	Orthology-athaliana Annotation-in-silico annotation Orthology-esiliculosus	Tiso gene 8160	MANNOSYL-CHITO-DOLICHOL-BIOSYNTHESIS
2.4.1.119-RXN	Oligosaccharyl transferase	EC-2.4.99.18	Orthology Annotation	Pantograph Pathwaytools	Annotation-experimental annotation Annotation-in-silico annotation Orthology-esiliculosus	Tiso gene 10448 Tiso gene 26	MANNOSYL-CHITO-DOLICHOL-BIOSYNTHESIS
2.4.1.125-RXN	Morn repeat protein	EC-2.4.1.5 EC-2.4.1.125	Annotation	Pathwaytools	Annotation-in-silico annotation	Tiso gene 3363
2.4.1.135-RXN	ORF	EC-2.4.1.135	Annotation	Pathwaytools	Annotation-in-silico annotation	Tiso gene 4139	PWY-6557
2.4.1.141-RXN		EC-2.4.1.141	Annotation	Pathwaytools	Annotation-in-silico annotation		MANNOSYL-CHITO-DOLICHOL-BIOSYNTHESIS
2.4.1.142-RXN	Chitobiosyldiphosphodolichol beta-	EC-2.4.1.142	Orthology Annotation	Pantograph Pathwaytools	Annotation-in-silico annotation Orthology-esiliculosus	Tiso gene 8387	MANNOSYL-CHITO-DOLICHOL-BIOSYNTHESIS
2.4.1.224-RXN	Exostosin-1 Probable glycosyltransferase	EC-2.4.1.224	Annotation	Pathwaytools	Annotation-in-silico annotation	Tiso gene 6495 Tiso gene 6496	PWY-6558
2.4.1.225-RXN	Exostosin-1	EC-2.4.1.225	Annotation	Pathwaytools	Annotation-in-silico annotation	Tiso gene 6495	PWY-6558

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