Semantic search

	Common name	Ec number	Reconstruction category	Reconstruction tool	Reconstruction source	Gene associated	In pathway
CTPSYN-RXN		EC-6.3.4.2	Manual Annotation	Pathwaytools	Annotation-in-silico annotation Manual-primary network Annotation-experimental annotation		PWY-7185 PWY-7176 PWY-7177
CYCLOEUCALENOL-CYCLOISOMERASE-RXN	Cycloeucalenol cycloisomerase	EC-5.5.1.9	Orthology Annotation	Pantograph Pathwaytools	Annotation-in-silico annotation Orthology-creinhardtii Orthology-esiliculosus	Tiso gene 10532	PWY-7155 PWY-2541
CYCLOHEXANONE-MONOOXYGENASE-RXN	Fad-containing monooxygenase	EC-1.14.13.22	Annotation	Pathwaytools	Annotation-in-silico annotation	Tiso gene 9613	CYCLOHEXANOL-OXIDATION-PWY
CYSTATHIONINE-BETA-SYNTHASE-RXN	Cysteine	EC-4.2.1.22	Orthology Annotation	Pantograph Pathwaytools	Orthology-creinhardtii Annotation-in-silico annotation Orthology-esiliculosus	Tiso gene 7852 Tiso gene 3732	HOMOCYSDEGR-PWY PWY-I9 PWY-801
CYSTEAMINE-DIOXYGENASE-RXN	2-aminoethanethiol dioxygenase	EC-1.13.11.19	Orthology Annotation	Pantograph Pathwaytools	Annotation-in-silico annotation Orthology-esiliculosus	Tiso gene 9748	PWY-5331
CYSTEINE--TRNA-LIGASE-RXN	Cysteinyl-trna Cysteine--trna ligase	EC-6.1.1.16	Orthology Annotation	Pantograph Pathwaytools	Annotation-experimental annotation Annotation-in-silico annotation Orthology-esiliculosus	Tiso gene 17657 Tiso gene 10881	TRNA-CHARGING-PWY
CYSTEINE-AMINOTRANSFERASE-RXN	Cysteine transaminase	EC-2.6.1.3	Orthology Annotation	Pantograph Pathwaytools	Annotation-experimental annotation Orthology-athaliana Orthology-creinhardtii	Tiso gene 17718 Tiso gene 6815	PWY-5329 PWY0-1534
CYSTEINE-DIOXYGENASE-RXN	Cysteine dioxygenase	EC-1.13.11.20	Orthology Annotation	Pantograph Pathwaytools	Annotation-in-silico annotation Orthology-creinhardtii Orthology-esiliculosus	Tiso gene 1457	PWY-5331 CYSTEINE-DEG-PWY
CYTIDEAM2-RXN		EC-3.5.4.5	Annotation	Pathwaytools	Annotation-in-silico annotation		PWY-7193 PWY0-1295 PWY-6556
CYTIKIN-RXN		EC-2.7.1.213	Annotation	Pathwaytools	Annotation-in-silico annotation		PWY-5532 PWY-7193
CYTOCHROME-B5-REDUCTASE-RXN	Nadh-cytochrome b5reductase ORF Cytochrome b5 reductase	EC-1.6.2.2	Orthology Annotation	Pantograph Pathwaytools	Orthology-athaliana Annotation-in-silico annotation	Tiso gene 6189 Tiso gene 19905 Tiso gene 8773 Tiso gene 7152
CYTOCHROME-C-OXIDASE-RXN	ORF	EC-1.9.3.1	Orthology Manual Annotation	Pantograph Pathwaytools	Annotation-experimental annotation Manual-primary network Annotation-in-silico annotation Orthology-esiliculosus	Tiso gene 18580 Tiso gene 7948 Tiso gene 15682 Tiso gene 18053	PWY-3781 PWY-7279 PWY-4521
CYTOCHROME-C-PEROXIDASE-RXN	Ascorbate peroxidase Cytochrome-c peroxidase Peroxidase ORF	EC-1.11.1.5	Manual Annotation	Pathwaytools	Annotation-experimental annotation Manual-primary network Annotation-in-silico annotation	Tiso gene 11607 Tiso gene 4992 Tiso gene 4990 Tiso gene 5435 Tiso gene 19683 Tiso gene 11606
D-RIBULOKIN-RXN		EC-2.7.1.47	Annotation	Pathwaytools	Annotation-in-silico annotation		RIBITOLUTIL-PWY DARABCAT-PWY
D-THREO-ALDOSE-1-DEHYDROGENASE-RXN	Aldo keto reductase	EC-1.1.1.122	Annotation	Pathwaytools	Annotation-in-silico annotation	Tiso gene 6340
DADPKIN-RXN	ORF Adenylate kinase domain-containing protein 1 Nucleoside diphosphate kinase	EC-2.7.4.6	Orthology Manual Annotation	Pantograph Pathwaytools	Annotation-experimental annotation Orthology-esiliculosus Annotation-in-silico annotation Orthology-athaliana Orthology-synechocystis Manual-primary network	Tiso gene 17271 Tiso gene 9290 Tiso gene 18224 Tiso gene 16529 Tiso gene 17272 Tiso gene 195	PWY-7220 PWY-7224 PWY-7227
DAHPSYN-RXN	Phospho-2-dehydro-3-deoxyheptonate phe-sensitive 3-deoxy-7-phosphoheptulonate synthase ORF	EC-2.5.1.54	Orthology Manual Annotation	Pantograph Pathwaytools	Annotation-experimental annotation Orthology-esiliculosus Annotation-in-silico annotation Orthology-athaliana Manual-primary network Orthology-creinhardtii	Tiso gene 7372 Tiso gene 18937 Tiso gene 18975 Tiso gene 8935 Tiso gene 8934	PWY-6164
DCDPKIN-RXN	ORF Nucleoside diphosphate kinase Adenylate kinase domain-containing protein 1	EC-2.7.4.6	Orthology Manual Annotation	Pantograph Pathwaytools	Annotation-experimental annotation Orthology-esiliculosus Annotation-in-silico annotation Orthology-athaliana Orthology-synechocystis Manual-primary network	Tiso gene 16529 Tiso gene 9290 Tiso gene 17271 Tiso gene 195 Tiso gene 17272 Tiso gene 18224	PWY-7210 PWY-7198 PWY-7184 PWY-7197 PWY0-166 PWY-6545
DCTP-PYROPHOSPHATASE-RXN	Inosine triphosphate Xtp3a-related ntp pyrophosphatase	EC-3.6.1.9 EC-3.6.1.12 EC-3.6.1.65	Annotation	Pathwaytools	Annotation-in-silico annotation	Tiso gene 8618 Tiso gene 18793 Tiso gene 18792	PWY-7206
DEOXYADENYLATE-KINASE-RXN		EC-2.7.4.13 EC-2.7.4.11	Orthology Annotation	Pantograph Pathwaytools	Annotation-in-silico annotation Orthology-creinhardtii Orthology-synechocystis	Tiso gene 5387 Tiso gene 805 Tiso gene 5837 Tiso gene 12257 Tiso gene 5839 Tiso gene 19036 Tiso gene 5388	PWY-7224
DEOXYHYPUSINE-MONOOXYGENASE-RXN	Deoxyhypusine hydroxylase	EC-1.14.99.29	Annotation	Pathwaytools	Annotation-in-silico annotation	Tiso gene 10811	PWY-5905
DEOXYRIBODIPYRIMIDINE-PHOTOLYASE-RXN	Cryptochrome photolyase fad-binding domain-containing protein	EC-4.1.99.3	Orthology Annotation	Pantograph Pathwaytools	Annotation-in-silico annotation Orthology-esiliculosus	Tiso gene 15524 Tiso gene 15525 Tiso gene 6548 Tiso gene 16321 Tiso gene 15196 Tiso gene 6547 Tiso gene 6546
DEPHOSPHOCOAKIN-RXN	Dephospho- kinase	EC-2.7.1.24	Orthology Annotation	Pantograph Pathwaytools	Annotation-in-silico annotation Orthology-synechocystis Orthology-esiliculosus	Tiso gene 19719	COA-PWY-1 COA-PWY
DETHIOBIOTIN-SYN-RXN	Adenosylmethionine-8-amino-7-oxononanoate aminotransferase	EC-6.3.3.3	Annotation	Pathwaytools	Annotation-in-silico annotation	Tiso gene 11635	PWY0-1507 PWY-7380
DGDPKIN-RXN	ORF Adenylate kinase domain-containing protein 1 Nucleoside diphosphate kinase	EC-2.7.4.6	Orthology Manual Annotation	Pantograph Pathwaytools	Annotation-experimental annotation Orthology-esiliculosus Annotation-in-silico annotation Orthology-athaliana Orthology-synechocystis Manual-primary network Orthology-creinhardtii	Tiso gene 195 Tiso gene 17272 Tiso gene 17271 Tiso gene 16529 Tiso gene 18224 Tiso gene 9290	PWY-7222 PWY-7224 PWY-7226
DHHB-METHYLTRANSFER-RXN	3-demethylubiquinone-9 3-methyltransferase 5-demethylubiquinone-8 methyltransferase	EC-2.1.1.64	Annotation	Pathwaytools	Annotation-in-silico annotation	Tiso gene 6943	PWY-6708 PWY-5870
DIACYLGLYCEROL-O-ACYLTRANSFERASE-RXN	Diacylglycerol acyltransferase At5g53050 protein	EC-2.3.1.20	Orthology Annotation	Pantograph Pathwaytools	Annotation-in-silico annotation Orthology-esiliculosus	Tiso gene 3902 Tiso gene 8006 Tiso gene 20057 Tiso gene 8007 Tiso gene 8889 Tiso gene 20058 Tiso gene 11824	TRIGLSYN-PWY
DIACYLGLYKIN-RXN	Diacylglycerol kinase catalytic region Diacylglycerol kinase Sphingosine kinase 1	EC-2.7.1.107	Orthology Annotation	Pantograph Pathwaytools	Annotation-in-silico annotation Orthology-esiliculosus	Tiso gene 1163 Tiso gene 1420 Tiso gene 14560	PWY-7817 PWY-7039
DIAMINOPIMDECARB-RXN	Diaminopimelate decarboxylase	EC-4.1.1.20	Orthology Manual Annotation	Pantograph Pathwaytools	Orthology-esiliculosus Annotation-in-silico annotation Orthology-athaliana Orthology-synechocystis Manual-primary network Orthology-creinhardtii	Tiso gene 12041 Tiso gene 10737	PWY-5097 PWY-2942 DAPLYSINESYN-PWY PWY-2941
DIHYDRODIPICSYN-RXN	Dihydrodipicolinate synthase Dihydropicolinate synthetase Dihydrodipicolinic acid synthase	EC-4.3.3.7	Orthology Manual Annotation	Pantograph Pathwaytools	Manual-primary network Annotation-in-silico annotation Orthology-esiliculosus	Tiso gene 14829	PWY-5097 PWY-2942 DAPLYSINESYN-PWY PWY-2941
DIHYDROFOLATESYNTH-RXN	Folylpolyglutamate synthase	EC-6.3.2.12	Orthology Annotation	Pantograph Pathwaytools	Annotation-in-silico annotation Orthology-synechocystis	Tiso gene 92 Tiso gene 15942	PWY-6614
DIHYDROKAEMPFEROL-4-REDUCTASE-RXN	Dihydroflavonol-4-reductase	EC-1.1.1.219	Orthology Annotation	Pantograph Pathwaytools	Orthology-athaliana Annotation-in-silico annotation Orthology-esiliculosus	Tiso gene 15272 Tiso gene 9504 Tiso gene 9503 Tiso gene 11016	PWY1F-823
DIHYDROOROT-RXN	ORF	EC-3.5.2.3	Orthology Manual Annotation	Pantograph Pathwaytools	Annotation-in-silico annotation Manual-primary network Orthology-creinhardtii Orthology-synechocystis Annotation-experimental annotation	Tiso gene 15379	PWY-7790 PWY-7791 PWY-5686
DIHYDROOROTATE-DEHYDROGENASE-RXN	ORF	EC-1.3.5.2	Orthology Annotation	Pantograph Pathwaytools	Annotation-in-silico annotation Orthology-esiliculosus	Tiso gene 5280 Tiso gene 4735	PWY-5686
DIHYDROXYISOVALDEHYDRAT-RXN		EC-4.2.1.9	Orthology Manual Annotation	Pantograph Pathwaytools	Manual-primary network Annotation-experimental annotation Orthology-athaliana Orthology-esiliculosus	Tiso gene 1563	VALSYN-PWY PWY-7111
DIHYDROXYMETVALDEHYDRAT-RXN	2,3-Dihydroxy-3-methylvalerate dehydratase	EC-4.2.1.9	Orthology Manual Annotation	Pantograph Pathwaytools	Annotation-experimental annotation Orthology-esiliculosus Orthology-athaliana Orthology-synechocystis Manual-primary network Orthology-creinhardtii	Tiso gene 1563	PWY-5103 ILEUSYN-PWY PWY-5101 PWY-5104
DIMETHUROPORDEHYDROG-RXN	At5g40850 mhk7 8 ORF	EC-1.3.1.76	Annotation	Pathwaytools	Annotation-in-silico annotation	Tiso gene 8614 Tiso gene 15852	PWY-7377 PWY-5194
DIMETHYLGLYCINE-DEHYDROGENASE-RXN	Dimethylglycine dehydrogenase	EC-1.5.8.4	Annotation	Pathwaytools	Annotation-in-silico annotation	Tiso gene 2717	PWY-3661
DIOHBUTANONEPSYN-RXN	Riboflavin biosynthesis protein	EC-4.1.99.12	Orthology Annotation	Pantograph Pathwaytools	Annotation-in-silico annotation Orthology-esiliculosus	Tiso gene 14275 Tiso gene 19932	PWY-6167 PWY-6168 RIBOSYN2-PWY
DIPHOSPHOMEVALONTE-DECARBOXYLASE-RXN	Diphosphomevalonate decarboxylase	EC-4.1.1.33	Orthology Annotation	Pantograph Pathwaytools	Orthology-athaliana Annotation-in-silico annotation Orthology-esiliculosus	Tiso gene 4171	PWY-922 PWY-7391
DIPHTINE--AMMONIA-LIGASE-RXN	Endoribonuclease l-psp domain-containing protein	EC-6.3.1.14	Annotation	Pathwaytools	Annotation-in-silico annotation	Tiso gene 3764	PWY-6482 PWY-7546
DISULFOXRED-RXN	Dsba oxidoreductase		Orthology Annotation	Pantograph Pathwaytools	Annotation-in-silico annotation Orthology-esiliculosus	Tiso gene 6764 Tiso gene 9683 Tiso gene 16604 Tiso gene 4244
DISULISOM-RXN	ORF Nucleoredoxin Probable protein disulfide-isomerase	EC-5.3.4.1	Orthology Annotation	Pantograph Pathwaytools	Annotation-in-silico annotation Annotation-experimental annotation Orthology-esiliculosus	Tiso gene 15704 Tiso gene 4246 Tiso gene 4244 Tiso gene 14313 Tiso gene 475 Tiso gene 7350
DNA-DIRECTED-DNA-POLYMERASE-RXN	Translesion dna polymerase-rev1 deoxycytidyl transferase Wd repeat domain-containing protein Glucose-6-phosphate phosphate and phosphoenolpyruvate phosphate antiporter Dna polymerase Nucleotidyltransferase domain containing protein Dna polymerase eta Dna polymerase epsilon subunit b protein Dna polymerase epsilon subunit b-like protein Dna polymerase alpha subunit two Dna polymerase i Dna repair deoxycytidyl transferase rev1 Dna polymerase delta subunit 4 Drug metabolite transporter superfamily Dna polymerase zeta catalytic subunit	EC-2.7.7.7	Orthology Annotation	Pantograph Pathwaytools	Annotation-in-silico annotation Annotation-experimental annotation Orthology-esiliculosus	Tiso gene 7195 Tiso gene 6588 Tiso gene 1474 Tiso gene 11334 Tiso gene 10530 Tiso gene 18790 Tiso gene 8127 Tiso gene 13303 Tiso gene 8058 Tiso gene 12155 Tiso gene 7025 Tiso gene 5184 Tiso gene 16689 Tiso gene 865 Tiso gene 11822 Tiso gene 6214 Tiso gene 17660 Tiso gene 11013 Tiso gene 17661 Tiso gene 866 Tiso gene 4276 Tiso gene 17523 Tiso gene 11577 Tiso gene 4873 Tiso gene 3651
DNA-DIRECTED-RNA-POLYMERASE-RXN	Dna-directed rna polymerase Dna-directed rnapolymerasesubunit Mitochondrial rna polymerase ORF Stackhouse genomicscaffold 618 Dna-directed rna polymerase subunit Dna-directed rna polymerase ii subunit rpb11 Rna polymerase ii core subunit Dna-directed rna polymerase iii subunit rpc8 Rna polymerase iii subunit Dna-directed rnapolymerasesubunit10-likeprotein	EC-2.7.7.6	Orthology Annotation	Pantograph Pathwaytools	Annotation-in-silico annotation Annotation-experimental annotation Orthology-esiliculosus	Tiso gene 1036 Tiso gene 18581 Tiso gene 2991 Tiso gene 4620 Tiso gene 4065 Tiso gene 1037 Tiso gene 14025 Tiso gene 45 Tiso gene 15544 Tiso gene 4740 Tiso gene 3449 Tiso gene 12932 Tiso gene 6645 Tiso gene 13099 Tiso gene 12128 Tiso gene 16254 Tiso gene 20506 Tiso gene 11215 Tiso gene 12339 Tiso gene 3895 Tiso gene 7128 Tiso gene 44 Tiso gene 6812 Tiso gene 5176 Tiso gene 19914 Tiso gene 1013 Tiso gene 7315 Tiso gene 5178 Tiso gene 5177
DNA-LIGASE-ATP-RXN	Dna ligase Dna ligase mrna capping enzyme ORF	EC-6.5.1.7 EC-6.5.1.1 EC-6.5.1.6	Orthology Annotation	Pantograph Pathwaytools	Annotation-in-silico annotation Orthology-esiliculosus	Tiso gene 3498 Tiso gene 14250 Tiso gene 14249 Tiso gene 6743 Tiso gene 11251 Tiso gene 12142
DOLICHYLDIPHOSPHATASE-RXN	Dolichyldiphosphatase	EC-3.6.1.43	Orthology Annotation	Pantograph Pathwaytools	Orthology-athaliana Annotation-in-silico annotation	Tiso gene 13799
DTDPDEHYRHAMREDUCT-RXN	Methionine adenosyltransferase regulatory beta subunit-related	EC-1.1.1.133	Annotation	Pathwaytools	Annotation-in-silico annotation	Tiso gene 4472	DTDPRHAMSYN-PWY
DTDPGLUCDEHYDRAT-RXN	Aminotransferase s-adenosyl-l-homocysteine hydrolase	EC-4.2.1.46	Orthology Annotation	Pantograph Pathwaytools	Orthology-athaliana Annotation-in-silico annotation Orthology-synechocystis Orthology-esiliculosus	Tiso gene 7329 Tiso gene 12394	PWY-7315 PWY-7316 DTDPRHAMSYN-PWY PWY-7301 PWY-7104 PWY-6953 PWY-7318 PWY-6942 PWY-7312 PWY-7814 PWY-7440 PWY-7657 PWY-6808 PWY-7413 PWY-6976 PWY-7688 PWY-6974 PWY-6973 PWY-3221 PWY-7414
DTDPKIN-RXN	ORF Nucleoside diphosphate kinase Adenylate kinase domain-containing protein 1	EC-2.7.4.6	Orthology Manual Annotation	Pantograph Pathwaytools	Annotation-experimental annotation Orthology-esiliculosus Annotation-in-silico annotation Orthology-athaliana Orthology-synechocystis Manual-primary network	Tiso gene 9290 Tiso gene 17271 Tiso gene 18224 Tiso gene 17272 Tiso gene 16529 Tiso gene 195	PWY-7210 PWY-7198 PWY-7184 PWY-7187 PWY-7197 PWY0-166 PWY-6545

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