Difference between revisions of "1.1.1.34-RXN"

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(Created page with "Category:Metabolite == Metabolite [http://metacyc.org/META/NEW-IMAGE?object=SPHINGOSINE SPHINGOSINE] == * smiles: ** CCCCCCCCCCCCCC=CC(O)C([N+])CO * inchi key: ** InChIKey...")
(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=1.1.1.34-RXN 1.1.1.34-RXN] == * direction: ** REVERSIBLE * common name: ** ORF ** mitochondrial_car...")
 
(One intermediate revision by the same user not shown)
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[[Category:Metabolite]]
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[[Category:Reaction]]
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== Metabolite [http://metacyc.org/META/NEW-IMAGE?object=SPHINGOSINE SPHINGOSINE] ==
+
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=1.1.1.34-RXN 1.1.1.34-RXN] ==
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* smiles:
+
* direction:
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** CCCCCCCCCCCCCC=CC(O)C([N+])CO
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** REVERSIBLE
−
* inchi key:
+
−
** InChIKey=WWUZIQQURGPMPG-KRWOKUGFSA-O
+
 
* common name:
 
* common name:
−
** sphingosine
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** ORF
−
* molecular weight:
+
** mitochondrial_carrier_protein
−
** 300.504   
+
* ec number:
 +
** [http://enzyme.expasy.org/EC/1.1.1.34 EC-1.1.1.34]
 
* Synonym(s):
 
* Synonym(s):
−
** sphingenine
 
−
** (4E)-sphing-4-enine
 
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** D-erythro-sphingosine
 
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** 2-amino-4-octadecene-1,3-diol
 
  
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== Reaction(s) known to consume the compound ==
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== Reaction Formula ==
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* [[RXN3DJ-11417]]
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* With identifiers:
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== Reaction(s) known to produce the compound ==
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** 1 [[CO-A]][c] '''+''' 1 [[MEVALONATE]][c] '''+''' 2 [[NADP]][c] '''<=>''' 2 [[PROTON]][c] '''+''' 2 [[NADPH]][c] '''+''' 1 [[3-HYDROXY-3-METHYL-GLUTARYL-COA]][c]
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* [[CERAMIDASE-RXN]]
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* With common name(s):
−
== Reaction(s) of unknown directionality ==
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** 1 coenzyme A[c] '''+''' 1 (R)-mevalonate[c] '''+''' 2 NADP+[c] '''<=>''' 2 H+[c] '''+''' 2 NADPH[c] '''+''' 1 (S)-3-hydroxy-3-methylglutaryl-CoA[c]
 +
 
 +
== Genes associated with this reaction  ==
 +
Genes have been associated with this reaction based on different elements listed below.
 +
* Gene: [[Tiso_gene_16182]]
 +
** Source: [[annotation-in-silico_annotation]]
 +
*** Assignment: EC-NUMBER
 +
* Gene: [[Tiso_gene_17889]]
 +
** Source: [[annotation-in-silico_annotation]]
 +
*** Assignment: EC-NUMBER
 +
== Pathways  ==
 +
* [[PWY-922]], mevalonate pathway I: [http://metacyc.org/META/NEW-IMAGE?object=PWY-922 PWY-922]
 +
** '''6''' reactions found over '''7''' reactions in the full pathway
 +
* [[PWY-6174]], mevalonate pathway II (archaea): [http://metacyc.org/META/NEW-IMAGE?object=PWY-6174 PWY-6174]
 +
** '''5''' reactions found over '''7''' reactions in the full pathway
 +
* [[PWY-7391]], isoprene biosynthesis II (engineered): [http://metacyc.org/META/NEW-IMAGE?object=PWY-7391 PWY-7391]
 +
** '''6''' reactions found over '''8''' reactions in the full pathway
 +
* [[PWY-7524]], mevalonate pathway III (archaea): [http://metacyc.org/META/NEW-IMAGE?object=PWY-7524 PWY-7524]
 +
** '''4''' reactions found over '''8''' reactions in the full pathway
 +
== Reconstruction information  ==
 +
* Category: [[annotation]]
 +
** Source: [[annotation-in-silico_annotation]]
 +
*** Tool: [[pathwaytools]]
 
== External links  ==
 
== External links  ==
−
* PUBCHEM:
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* RHEA:
−
** [http://pubchem.ncbi.nlm.nih.gov/summary/summary.cgi?cid=46878424 46878424]
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** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=15989 15989]
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* HMDB : HMDB00252
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* LIGAND-RXN:
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* LIGAND-CPD:
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** [http://www.genome.jp/dbget-bin/www_bget?R02082 R02082]
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** [http://www.genome.jp/dbget-bin/www_bget?C00319 C00319]
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* UNIPROT:
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* CHEMSPIDER:
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** [http://www.uniprot.org/uniprot/P16393 P16393]
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** [http://www.chemspider.com/Chemical-Structure.4444047.html 4444047]
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** [http://www.uniprot.org/uniprot/P14891 P14891]
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* CHEBI:
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** [http://www.uniprot.org/uniprot/P16237 P16237]
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** [http://www.ebi.ac.uk/chebi/searchId.do?chebiId=57756 57756]
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** [http://www.uniprot.org/uniprot/P20715 P20715]
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* METABOLIGHTS : MTBLC57756
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** [http://www.uniprot.org/uniprot/Q59468 Q59468]
−
{{#set: smiles=CCCCCCCCCCCCCC=CC(O)C([N+])CO}}
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** [http://www.uniprot.org/uniprot/Q01237 Q01237]
−
{{#set: inchi key=InChIKey=WWUZIQQURGPMPG-KRWOKUGFSA-O}}
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** [http://www.uniprot.org/uniprot/Q61671 Q61671]
−
{{#set: common name=sphingosine}}
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** [http://www.uniprot.org/uniprot/Q944T9 Q944T9]
−
{{#set: molecular weight=300.504    }}
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** [http://www.uniprot.org/uniprot/Q9S9C2 Q9S9C2]
−
{{#set: common name=sphingenine|(4E)-sphing-4-enine|D-erythro-sphingosine|2-amino-4-octadecene-1,3-diol}}
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** [http://www.uniprot.org/uniprot/Q9S999 Q9S999]
−
{{#set: consumed by=RXN3DJ-11417}}
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** [http://www.uniprot.org/uniprot/Q9S998 Q9S998]
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{{#set: produced by=CERAMIDASE-RXN}}
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** [http://www.uniprot.org/uniprot/Q9S997 Q9S997]
 +
** [http://www.uniprot.org/uniprot/P04035 P04035]
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** [http://www.uniprot.org/uniprot/P00347 P00347]
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** [http://www.uniprot.org/uniprot/P29058 P29058]
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** [http://www.uniprot.org/uniprot/P29057 P29057]
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** [http://www.uniprot.org/uniprot/Q12577 Q12577]
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** [http://www.uniprot.org/uniprot/Q12649 Q12649]
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** [http://www.uniprot.org/uniprot/Q00583 Q00583]
 +
** [http://www.uniprot.org/uniprot/Q01559 Q01559]
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** [http://www.uniprot.org/uniprot/P48022 P48022]
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** [http://www.uniprot.org/uniprot/Q43825 Q43825]
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** [http://www.uniprot.org/uniprot/Q43826 Q43826]
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** [http://www.uniprot.org/uniprot/P14773 P14773]
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** [http://www.uniprot.org/uniprot/Q7M4W2 Q7M4W2]
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** [http://www.uniprot.org/uniprot/Q7M4W1 Q7M4W1]
 +
** [http://www.uniprot.org/uniprot/Q7M4W4 Q7M4W4]
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** [http://www.uniprot.org/uniprot/Q7M4W3 Q7M4W3]
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** [http://www.uniprot.org/uniprot/P48019 P48019]
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** [http://www.uniprot.org/uniprot/Q41454 Q41454]
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** [http://www.uniprot.org/uniprot/Q42506 Q42506]
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** [http://www.uniprot.org/uniprot/Q41455 Q41455]
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** [http://www.uniprot.org/uniprot/Q41456 Q41456]
 +
** [http://www.uniprot.org/uniprot/Q41458 Q41458]
 +
** [http://www.uniprot.org/uniprot/P48020 P48020]
 +
** [http://www.uniprot.org/uniprot/Q9FS01 Q9FS01]
 +
** [http://www.uniprot.org/uniprot/Q42466 Q42466]
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** [http://www.uniprot.org/uniprot/O48624 O48624]
 +
** [http://www.uniprot.org/uniprot/O04188 O04188]
 +
** [http://www.uniprot.org/uniprot/O24594 O24594]
 +
** [http://www.uniprot.org/uniprot/Q41438 Q41438]
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** [http://www.uniprot.org/uniprot/O64966 O64966]
 +
** [http://www.uniprot.org/uniprot/O64967 O64967]
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** [http://www.uniprot.org/uniprot/Q03163 Q03163]
 +
** [http://www.uniprot.org/uniprot/Q39628 Q39628]
 +
** [http://www.uniprot.org/uniprot/P93514 P93514]
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** [http://www.uniprot.org/uniprot/O08424 O08424]
 +
{{#set: direction=REVERSIBLE}}
 +
{{#set: common name=ORF}}
 +
{{#set: common name=mitochondrial_carrier_protein}}
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{{#set: ec number=EC-1.1.1.34}}
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{{#set: gene associated=Tiso_gene_16182|Tiso_gene_17889}}
 +
{{#set: in pathway=PWY-922|PWY-6174|PWY-7391|PWY-7524}}
 +
{{#set: reconstruction category=annotation}}
 +
{{#set: reconstruction source=annotation-in-silico_annotation}}
 +
{{#set: reconstruction tool=pathwaytools}}

Latest revision as of 20:54, 21 March 2018

Reaction 1.1.1.34-RXN

  • direction:
    • REVERSIBLE
  • common name:
    • ORF
    • mitochondrial_carrier_protein
  • ec number:
  • Synonym(s):

Reaction Formula

Genes associated with this reaction

Genes have been associated with this reaction based on different elements listed below.

Pathways

  • PWY-922, mevalonate pathway I: PWY-922
    • 6 reactions found over 7 reactions in the full pathway
  • PWY-6174, mevalonate pathway II (archaea): PWY-6174
    • 5 reactions found over 7 reactions in the full pathway
  • PWY-7391, isoprene biosynthesis II (engineered): PWY-7391
    • 6 reactions found over 8 reactions in the full pathway
  • PWY-7524, mevalonate pathway III (archaea): PWY-7524
    • 4 reactions found over 8 reactions in the full pathway

Reconstruction information

External links





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