Difference between revisions of "1.1.1.8-RXN"

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(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN1G-1436 RXN1G-1436] == * direction: ** LEFT-TO-RIGHT * common name: ** trehalose-phosphatase * e...")
(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=1.1.1.8-RXN 1.1.1.8-RXN] == * direction: ** LEFT-TO-RIGHT * common name: ** ORF ** glycerol-3-phosp...")
 
(2 intermediate revisions by the same user not shown)
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[[Category:Reaction]]
 
[[Category:Reaction]]
−
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN1G-1436 RXN1G-1436] ==
+
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=1.1.1.8-RXN 1.1.1.8-RXN] ==
 
* direction:
 
* direction:
 
** LEFT-TO-RIGHT
 
** LEFT-TO-RIGHT
 
* common name:
 
* common name:
−
** trehalose-phosphatase
+
** ORF
 +
** glycerol-3-phosphate_dehydrogenase
 
* ec number:
 
* ec number:
−
** [http://enzyme.expasy.org/EC/3.1.3.12 EC-3.1.3.12]
+
** [http://enzyme.expasy.org/EC/1.1.1.8 EC-1.1.1.8]
 
* Synonym(s):
 
* Synonym(s):
  
 
== Reaction Formula ==
 
== Reaction Formula ==
 
* With identifiers:
 
* With identifiers:
−
** 1 [[WATER]][c] '''+''' 1 [[CPD1G-771]][c] '''=>''' 1 [[Pi]][c] '''+''' 1 [[CPD1G-1345]][c]
+
** 1 [[PROTON]][c] '''+''' 1 [[DIHYDROXY-ACETONE-PHOSPHATE]][c] '''+''' 1 [[NADH]][c] '''=>''' 1 [[NAD]][c] '''+''' 1 [[GLYCEROL-3P]][c]
 
* With common name(s):
 
* With common name(s):
−
** 1 H2O[c] '''+''' 1 6-O-cis-methoxy-mycolyl-trehalose 6-phosphate[c] '''=>''' 1 phosphate[c] '''+''' 1 trehalose-cis-methoxy-mono-mycolate[c]
+
** 1 H+[c] '''+''' 1 glycerone phosphate[c] '''+''' 1 NADH[c] '''=>''' 1 NAD+[c] '''+''' 1 sn-glycerol 3-phosphate[c]
  
 
== Genes associated with this reaction  ==
 
== Genes associated with this reaction  ==
 
Genes have been associated with this reaction based on different elements listed below.
 
Genes have been associated with this reaction based on different elements listed below.
−
* [[Tiso_gene_10840]]
+
* Gene: [[Tiso_gene_6069]]
−
** [[pantograph]]-[[esiliculosus]]
+
** Source: [[annotation-in-silico_annotation]]
−
* [[Tiso_gene_14220]]
+
*** Assignment: EC-NUMBER
−
** IN-SILICO_ANNOTATION
+
** Source: [[annotation-experimental_annotation]]
−
***AUTOMATED-NAME-MATCH
+
*** Assignment: EC-NUMBER
 +
** Source: [[orthology-esiliculosus]]
 +
** Source: [[orthology-creinhardtii]]
 +
* Gene: [[Tiso_gene_3718]]
 +
** Source: [[annotation-in-silico_annotation]]
 +
*** Assignment: EC-NUMBER
 +
** Source: [[orthology-esiliculosus]]
 +
** Source: [[orthology-creinhardtii]]
 +
* Gene: [[Tiso_gene_2810]]
 +
** Source: [[annotation-in-silico_annotation]]
 +
*** Assignment: EC-NUMBER
 +
** Source: [[annotation-experimental_annotation]]
 +
*** Assignment: EC-NUMBER
 +
* Gene: [[Tiso_gene_2811]]
 +
** Source: [[annotation-in-silico_annotation]]
 +
*** Assignment: EC-NUMBER
 +
** Source: [[orthology-synechocystis]]
 +
** Source: [[orthology-esiliculosus]]
 +
* Gene: [[Tiso_gene_13013]]
 +
** Source: [[annotation-in-silico_annotation]]
 +
*** Assignment: EC-NUMBER
 +
** Source: [[annotation-experimental_annotation]]
 +
*** Assignment: EC-NUMBER
 +
** Source: [[orthology-esiliculosus]]
 +
** Source: [[orthology-creinhardtii]]
 +
* Gene: [[Tiso_gene_15777]]
 +
** Source: [[annotation-experimental_annotation]]
 +
*** Assignment: EC-NUMBER
 
== Pathways  ==
 
== Pathways  ==
−
* [[PWYG-321]], mycolate biosynthesis: [http://metacyc.org/META/NEW-IMAGE?object=PWYG-321 PWYG-321]
+
* [[PWY-6118]], glycerol-3-phosphate shuttle: [http://metacyc.org/META/NEW-IMAGE?object=PWY-6118 PWY-6118]
−
** '''86''' reactions found over '''182''' reactions in the full pathway
+
** '''2''' reactions found over '''2''' reactions in the full pathway
 +
* [[PWY-7385]], 1,3-propanediol biosynthesis (engineered): [http://metacyc.org/META/NEW-IMAGE?object=PWY-7385 PWY-7385]
 +
** '''5''' reactions found over '''9''' reactions in the full pathway
 +
* [[PWY-7411]], phosphatidate biosynthesis (yeast): [http://metacyc.org/META/NEW-IMAGE?object=PWY-7411 PWY-7411]
 +
** '''5''' reactions found over '''5''' reactions in the full pathway
 
== Reconstruction information  ==
 
== Reconstruction information  ==
−
* [[orthology]]:
+
* Category: [[orthology]]
−
** [[pantograph]]:
+
** Source: [[orthology-creinhardtii]]
−
*** [[esiliculosus]]
+
*** Tool: [[pantograph]]
−
* [[annotation]]:
+
** Source: [[orthology-synechocystis]]
−
** [[pathwaytools]]:
+
*** Tool: [[pantograph]]
−
*** [[in-silico_annotation]]
+
** Source: [[orthology-esiliculosus]]
 +
*** Tool: [[pantograph]]
 +
* Category: [[manual]]
 +
** Source: [[manual-primary_network]]
 +
* Category: [[annotation]]
 +
** Source: [[annotation-experimental_annotation]]
 +
*** Tool: [[pathwaytools]]
 +
** Source: [[annotation-in-silico_annotation]]
 +
*** Tool: [[pathwaytools]]
 
== External links  ==
 
== External links  ==
 +
* LIGAND-RXN:
 +
** [http://www.genome.jp/dbget-bin/www_bget?R00842 R00842]
 +
* UNIPROT:
 +
** [http://www.uniprot.org/uniprot/P13707 P13707]
 +
** [http://www.uniprot.org/uniprot/P08507 P08507]
 +
** [http://www.uniprot.org/uniprot/O25614 O25614]
 +
** [http://www.uniprot.org/uniprot/Q9JWH0 Q9JWH0]
 +
** [http://www.uniprot.org/uniprot/P43798 P43798]
 +
** [http://www.uniprot.org/uniprot/O29390 O29390]
 +
** [http://www.uniprot.org/uniprot/P46919 P46919]
 +
** [http://www.uniprot.org/uniprot/P07735 P07735]
 +
** [http://www.uniprot.org/uniprot/P13706 P13706]
 +
** [http://www.uniprot.org/uniprot/Q00055 Q00055]
 +
** [http://www.uniprot.org/uniprot/P34517 P34517]
 +
** [http://www.uniprot.org/uniprot/P0A6S7 P0A6S7]
 +
** [http://www.uniprot.org/uniprot/P21695 P21695]
 +
** [http://www.uniprot.org/uniprot/P41911 P41911]
 +
** [http://www.uniprot.org/uniprot/P90593 P90593]
 
{{#set: direction=LEFT-TO-RIGHT}}
 
{{#set: direction=LEFT-TO-RIGHT}}
−
{{#set: common name=trehalose-phosphatase}}
+
{{#set: common name=ORF}}
−
{{#set: ec number=EC-3.1.3.12}}
+
{{#set: common name=glycerol-3-phosphate_dehydrogenase}}
−
{{#set: gene associated=Tiso_gene_10840|Tiso_gene_14220}}
+
{{#set: ec number=EC-1.1.1.8}}
−
{{#set: in pathway=PWYG-321}}
+
{{#set: gene associated=Tiso_gene_6069|Tiso_gene_3718|Tiso_gene_2810|Tiso_gene_2811|Tiso_gene_13013|Tiso_gene_15777}}
−
{{#set: reconstruction category=orthology}}
+
{{#set: in pathway=PWY-6118|PWY-7385|PWY-7411}}
−
{{#set: reconstruction tool=pantograph}}
+
{{#set: reconstruction category=orthology|manual|annotation}}
−
{{#set: reconstruction source=esiliculosus}}
+
{{#set: reconstruction source=annotation-experimental_annotation|orthology-esiliculosus|annotation-in-silico_annotation|orthology-synechocystis|manual-primary_network|orthology-creinhardtii}}
−
{{#set: reconstruction category=annotation}}
+
{{#set: reconstruction tool=pantograph|pathwaytools}}
−
{{#set: reconstruction tool=pathwaytools}}
+
−
{{#set: reconstruction source=in-silico_annotation}}
+

Latest revision as of 21:02, 21 March 2018

Reaction 1.1.1.8-RXN

  • direction:
    • LEFT-TO-RIGHT
  • common name:
    • ORF
    • glycerol-3-phosphate_dehydrogenase
  • ec number:
  • Synonym(s):

Reaction Formula

Genes associated with this reaction

Genes have been associated with this reaction based on different elements listed below.

Pathways

  • PWY-6118, glycerol-3-phosphate shuttle: PWY-6118
    • 2 reactions found over 2 reactions in the full pathway
  • PWY-7385, 1,3-propanediol biosynthesis (engineered): PWY-7385
    • 5 reactions found over 9 reactions in the full pathway
  • PWY-7411, phosphatidate biosynthesis (yeast): PWY-7411
    • 5 reactions found over 5 reactions in the full pathway

Reconstruction information

External links





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