Difference between revisions of "1.3.7.4-RXN"

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(Created page with "Category:Pathway == Pathway [http://metacyc.org/META/NEW-IMAGE?object=PWY-7560 PWY-7560] == * taxonomic range: ** [http://metacyc.org/META/NEW-IMAGE?object=TAX-5794 TAX-57...")
(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=1.3.7.4-RXN 1.3.7.4-RXN] == * direction: ** LEFT-TO-RIGHT * ec number: ** [http://enzyme.expasy.org...")
 
(One intermediate revision by the same user not shown)
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[[Category:Pathway]]
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[[Category:Reaction]]
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== Pathway [http://metacyc.org/META/NEW-IMAGE?object=PWY-7560 PWY-7560] ==
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== Reaction [http://metacyc.org/META/NEW-IMAGE?object=1.3.7.4-RXN 1.3.7.4-RXN] ==
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* taxonomic range:
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* direction:
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** [http://metacyc.org/META/NEW-IMAGE?object=TAX-5794 TAX-5794]
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** LEFT-TO-RIGHT
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** [http://metacyc.org/META/NEW-IMAGE?object=TAX-1117 TAX-1117]
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* ec number:
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** [http://metacyc.org/META/NEW-IMAGE?object=TAX-33090 TAX-33090]
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** [http://enzyme.expasy.org/EC/1.3.7.4 EC-1.3.7.4]
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* common name:
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** methylerythritol phosphate pathway II
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* Synonym(s):
 
* Synonym(s):
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** nonmevalonate isopentenyl diphosphate biosynthesis
 
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** methylerythritol phosphate degradation
 
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** MEP degradation
 
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** deoxyxylulose phosphate pathway
 
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** DOXP pathway
 
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** Rohmer pathway
 
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** isopentenyl diphosphate biosynthesis -- mevalonate-independent
 
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** nonmevalonate isoprenoid pathway
 
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** MEP pathway
 
  
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== Reaction(s) found ==
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== Reaction Formula ==
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'''9''' reactions found over '''9''' reactions in the full pathway
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* With identifiers:
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* [[2.7.1.148-RXN]]
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** 1 [[BILIVERDINE]][c] '''+''' 2 [[PROTON]][c] '''+''' 2 [[Reduced-ferredoxins]][c] '''=>''' 1 [[3Z-PHYTOCHROMOBILIN]][c] '''+''' 2 [[Oxidized-ferredoxins]][c]
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** 1 associated gene(s):
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* With common name(s):
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*** [[Tiso_gene_13463]]
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** 1 biliverdin-IX-α[c] '''+''' 2 H+[c] '''+''' 2 a reduced ferredoxin [iron-sulfur] cluster[c] '''=>''' 1 (3Z)-phytochromobilin[c] '''+''' 2 an oxidized ferredoxin [iron-sulfur] cluster[c]
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** 7 reconstruction source(s) associated:
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*** [[annotation-experimental_annotation]]
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== Genes associated with this reaction  ==
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*** [[orthology-esiliculosus]]
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Genes have been associated with this reaction based on different elements listed below.
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*** [[annotation-in-silico_annotation]]
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* Gene: [[Tiso_gene_17350]]
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*** [[orthology-athaliana]]
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** Source: [[orthology-athaliana]]
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*** [[orthology-synechocystis]]
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** Source: [[orthology-esiliculosus]]
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*** [[manual-primary_network]]
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== Pathways  ==
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*** [[orthology-creinhardtii]]
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* [[PWY-7170]], phytochromobilin biosynthesis: [http://metacyc.org/META/NEW-IMAGE?object=PWY-7170 PWY-7170]
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* [[2.7.7.60-RXN]]
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** '''1''' reactions found over '''3''' reactions in the full pathway
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** 1 associated gene(s):
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== Reconstruction information  ==
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*** [[Tiso_gene_17568]]
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* Category: [[orthology]]
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** 6 reconstruction source(s) associated:
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** Source: [[orthology-athaliana]]
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*** [[annotation-experimental_annotation]]
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*** Tool: [[pantograph]]
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*** [[orthology-esiliculosus]]
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** Source: [[orthology-esiliculosus]]
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*** [[annotation-in-silico_annotation]]
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*** Tool: [[pantograph]]
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*** [[orthology-synechocystis]]
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*** [[manual-primary_network]]
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*** [[orthology-creinhardtii]]
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* [[DXPREDISOM-RXN]]
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** 1 associated gene(s):
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*** [[Tiso_gene_15169]]
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** 7 reconstruction source(s) associated:
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*** [[annotation-experimental_annotation]]
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*** [[orthology-esiliculosus]]
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*** [[annotation-in-silico_annotation]]
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*** [[orthology-athaliana]]
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*** [[orthology-synechocystis]]
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*** [[manual-primary_network]]
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*** [[orthology-creinhardtii]]
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* [[DXS-RXN]]
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** 1 associated gene(s):
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*** [[Tiso_gene_17311]]
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** 7 reconstruction source(s) associated:
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*** [[annotation-experimental_annotation]]
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*** [[orthology-esiliculosus]]
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*** [[annotation-in-silico_annotation]]
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*** [[orthology-athaliana]]
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*** [[orthology-synechocystis]]
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*** [[manual-primary_network]]
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*** [[orthology-creinhardtii]]
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* [[IPPISOM-RXN]]
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** 1 associated gene(s):
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*** [[Tiso_gene_8653]]
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** 2 reconstruction source(s) associated:
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*** [[manual-primary_network]]
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*** [[annotation-in-silico_annotation]]
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* [[ISPH2-RXN]]
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** 1 associated gene(s):
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*** [[Tiso_gene_5609]]
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** 6 reconstruction source(s) associated:
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*** [[annotation-experimental_annotation]]
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*** [[orthology-esiliculosus]]
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*** [[annotation-in-silico_annotation]]
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*** [[orthology-athaliana]]
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*** [[orthology-synechocystis]]
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*** [[manual-primary_network]]
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* [[RXN0-302]]
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** 1 associated gene(s):
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*** [[Tiso_gene_9642]]
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** 6 reconstruction source(s) associated:
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*** [[annotation-experimental_annotation]]
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*** [[orthology-esiliculosus]]
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*** [[annotation-in-silico_annotation]]
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*** [[orthology-synechocystis]]
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*** [[manual-primary_network]]
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*** [[orthology-creinhardtii]]
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* [[RXN0-882]]
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** 1 associated gene(s):
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*** [[Tiso_gene_15758]]
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** 2 reconstruction source(s) associated:
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*** [[orthology-synechocystis]]
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*** [[orthology-esiliculosus]]
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* [[RXN0-884]]
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** 1 associated gene(s):
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*** [[Tiso_gene_5609]]
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** 3 reconstruction source(s) associated:
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*** [[annotation-experimental_annotation]]
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*** [[annotation-in-silico_annotation]]
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*** [[orthology-esiliculosus]]
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== Reaction(s) not found ==
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== External links  ==
 
== External links  ==
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{{#set: taxonomic range=TAX-5794}}
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* LIGAND-RXN:
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{{#set: taxonomic range=TAX-1117}}
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** [http://www.genome.jp/dbget-bin/www_bget?R03678 R03678]
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{{#set: taxonomic range=TAX-33090}}
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{{#set: direction=LEFT-TO-RIGHT}}
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{{#set: common name=methylerythritol phosphate pathway II}}
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{{#set: ec number=EC-1.3.7.4}}
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{{#set: common name=nonmevalonate isopentenyl diphosphate biosynthesis|methylerythritol phosphate degradation|MEP degradation|deoxyxylulose phosphate pathway|DOXP pathway|Rohmer pathway|isopentenyl diphosphate biosynthesis -- mevalonate-independent|nonmevalonate isoprenoid pathway|MEP pathway}}
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{{#set: gene associated=Tiso_gene_17350}}
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{{#set: reaction found=9}}
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{{#set: in pathway=PWY-7170}}
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{{#set: total reaction=9}}
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{{#set: reconstruction category=orthology}}
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{{#set: completion rate=100.0}}
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{{#set: reconstruction source=orthology-athaliana|orthology-esiliculosus}}
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{{#set: reconstruction tool=pantograph}}

Latest revision as of 20:07, 21 March 2018

Reaction 1.3.7.4-RXN

  • direction:
    • LEFT-TO-RIGHT
  • ec number:
  • Synonym(s):

Reaction Formula

Genes associated with this reaction

Genes have been associated with this reaction based on different elements listed below.

Pathways

  • PWY-7170, phytochromobilin biosynthesis: PWY-7170
    • 1 reactions found over 3 reactions in the full pathway

Reconstruction information

External links




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