Difference between revisions of "1.6.5.4-RXN"

From metabolic_network
Jump to: navigation, search
(Created page with "Category:Pathway == Pathway [http://metacyc.org/META/NEW-IMAGE?object=PWY3O-355 PWY3O-355] == * taxonomic range: ** [http://metacyc.org/META/NEW-IMAGE?object=TAX-4751 TAX-...")
(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=1.6.5.4-RXN 1.6.5.4-RXN] == * direction: ** LEFT-TO-RIGHT * ec number: ** [http://enzyme.expasy.org...")
 
Line 1: Line 1:
−
[[Category:Pathway]]
+
[[Category:Reaction]]
−
== Pathway [http://metacyc.org/META/NEW-IMAGE?object=PWY3O-355 PWY3O-355] ==
+
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=1.6.5.4-RXN 1.6.5.4-RXN] ==
−
* taxonomic range:
+
* direction:
−
** [http://metacyc.org/META/NEW-IMAGE?object=TAX-4751 TAX-4751]
+
** LEFT-TO-RIGHT
−
* common name:
+
* ec number:
−
** stearate biosynthesis III (fungi)
+
** [http://enzyme.expasy.org/EC/1.6.5.4 EC-1.6.5.4]
 
* Synonym(s):
 
* Synonym(s):
−
** fatty acid biosynthesis
 
−
** stearic acid biosynthesis
 
−
** octadecanoate biosynthesis
 
−
** saturated fatty acid biosynthesis
 
  
−
== Reaction(s) found ==
+
== Reaction Formula ==
−
'''6''' reactions found over '''6''' reactions in the full pathway
+
* With identifiers:
−
* [[RXN-9624]]
+
** 1 [[NADH]][c] '''+''' 2 [[CPD-318]][c] '''=>''' 2 [[ASCORBATE]][c] '''+''' 1 [[NAD]][c] '''+''' 1 [[PROTON]][c]
−
** 2 associated gene(s):
+
* With common name(s):
−
*** [[Tiso_gene_7477]]
+
** 1 NADH[c] '''+''' 2 monodehydroascorbate radical[c] '''=>''' 2 L-ascorbate[c] '''+''' 1 NAD+[c] '''+''' 1 H+[c]
−
*** [[Tiso_gene_801]]
+
 
−
** 3 reconstruction source(s) associated:
+
== Genes associated with this reaction  ==
−
*** [[annotation-in-silico_annotation]]
+
Genes have been associated with this reaction based on different elements listed below.
−
*** [[orthology-athaliana]]
+
* Gene: [[Tiso_gene_2478]]
−
*** [[orthology-creinhardtii]]
+
** Source: [[orthology-athaliana]]
−
* [[RXN-9633]]
+
** Source: [[orthology-athaliana]]
−
** 7 associated gene(s):
+
== Pathways  ==
−
*** [[Tiso_gene_10876]]
+
* [[PWY-6370]], ascorbate recycling (cytosolic): [http://metacyc.org/META/NEW-IMAGE?object=PWY-6370 PWY-6370]
−
*** [[Tiso_gene_9885]]
+
** '''3''' reactions found over '''6''' reactions in the full pathway
−
*** [[Tiso_gene_136]]
+
== Reconstruction information  ==
−
*** [[Tiso_gene_135]]
+
* Category: [[orthology]]
−
*** [[Tiso_gene_500]]
+
** Source: [[orthology-athaliana]]
−
*** [[Tiso_gene_13394]]
+
*** Tool: [[pantograph]]
−
*** [[Tiso_gene_13083]]
+
−
** 4 reconstruction source(s) associated:
+
−
*** [[annotation-in-silico_annotation]]
+
−
*** [[manual-primary_network]]
+
−
*** [[annotation-experimental_annotation]]
+
−
*** [[orthology-esiliculosus]]
+
−
* [[RXN-9634]]
+
−
** 6 associated gene(s):
+
−
*** [[Tiso_gene_10876]]
+
−
*** [[Tiso_gene_500]]
+
−
*** [[Tiso_gene_136]]
+
−
*** [[Tiso_gene_135]]
+
−
*** [[Tiso_gene_13394]]
+
−
*** [[Tiso_gene_6884]]
+
−
** 3 reconstruction source(s) associated:
+
−
*** [[annotation-experimental_annotation]]
+
−
*** [[manual-primary_network]]
+
−
*** [[annotation-in-silico_annotation]]
+
−
* [[RXN3O-1803]]
+
−
** 9 associated gene(s):
+
−
*** [[Tiso_gene_135]]
+
−
*** [[Tiso_gene_5939]]
+
−
*** [[Tiso_gene_13394]]
+
−
*** [[Tiso_gene_14485]]
+
−
*** [[Tiso_gene_19302]]
+
−
*** [[Tiso_gene_500]]
+
−
*** [[Tiso_gene_10876]]
+
−
*** [[Tiso_gene_136]]
+
−
*** [[Tiso_gene_15991]]
+
−
** 6 reconstruction source(s) associated:
+
−
*** [[annotation-experimental_annotation]]
+
−
*** [[orthology-esiliculosus]]
+
−
*** [[annotation-in-silico_annotation]]
+
−
*** [[orthology-athaliana]]
+
−
*** [[orthology-synechocystis]]
+
−
*** [[manual-primary_network]]
+
−
* [[RXN3O-5293]]
+
−
** 5 associated gene(s):
+
−
*** [[Tiso_gene_10876]]
+
−
*** [[Tiso_gene_136]]
+
−
*** [[Tiso_gene_135]]
+
−
*** [[Tiso_gene_13394]]
+
−
*** [[Tiso_gene_500]]
+
−
** 1 reconstruction source(s) associated:
+
−
*** [[annotation-in-silico_annotation]]
+
−
* [[RXN3O-5304]]
+
−
** 5 associated gene(s):
+
−
*** [[Tiso_gene_500]]
+
−
*** [[Tiso_gene_135]]
+
−
*** [[Tiso_gene_13394]]
+
−
*** [[Tiso_gene_136]]
+
−
*** [[Tiso_gene_10876]]
+
−
** 1 reconstruction source(s) associated:
+
−
*** [[annotation-in-silico_annotation]]
+
−
== Reaction(s) not found ==
+
 
== External links  ==
 
== External links  ==
−
{{#set: taxonomic range=TAX-4751}}
+
* RHEA:
−
{{#set: common name=stearate biosynthesis III (fungi)}}
+
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=14581 14581]
−
{{#set: common name=fatty acid biosynthesis|stearic acid biosynthesis|octadecanoate biosynthesis|saturated fatty acid biosynthesis}}
+
* LIGAND-RXN:
−
{{#set: reaction found=6}}
+
** [http://www.genome.jp/dbget-bin/www_bget?R00095 R00095]
−
{{#set: total reaction=6}}
+
* UNIPROT:
−
{{#set: completion rate=100.0}}
+
** [http://www.uniprot.org/uniprot/Q9S926 Q9S926]
 +
** [http://www.uniprot.org/uniprot/Q40977 Q40977]
 +
** [http://www.uniprot.org/uniprot/Q42711 Q42711]
 +
** [http://www.uniprot.org/uniprot/Q43497 Q43497]
 +
{{#set: direction=LEFT-TO-RIGHT}}
 +
{{#set: ec number=EC-1.6.5.4}}
 +
{{#set: gene associated=Tiso_gene_2478}}
 +
{{#set: in pathway=PWY-6370}}
 +
{{#set: reconstruction category=orthology}}
 +
{{#set: reconstruction source=orthology-athaliana}}
 +
{{#set: reconstruction tool=pantograph}}

Latest revision as of 20:12, 21 March 2018

Reaction 1.6.5.4-RXN

  • direction:
    • LEFT-TO-RIGHT
  • ec number:
  • Synonym(s):

Reaction Formula

  • With identifiers:
  • With common name(s):
    • 1 NADH[c] + 2 monodehydroascorbate radical[c] => 2 L-ascorbate[c] + 1 NAD+[c] + 1 H+[c]

Genes associated with this reaction

Genes have been associated with this reaction based on different elements listed below.

Pathways

  • PWY-6370, ascorbate recycling (cytosolic): PWY-6370
    • 3 reactions found over 6 reactions in the full pathway

Reconstruction information

External links




Retrieved from "http://gem-aureme.irisa.fr/tisogem/index.php?title=1.6.5.4-RXN&oldid=40162"