Difference between revisions of "1.8.1.4-RXN"

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(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=ADENYL-KIN-RXN ADENYL-KIN-RXN] == * direction: ** LEFT-TO-RIGHT * common name: ** Adenylate kinase...")
(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=1.8.1.4-RXN 1.8.1.4-RXN] == * direction: ** LEFT-TO-RIGHT * ec number: ** [http://enzyme.expasy.org...")
 
Line 1: Line 1:
 
[[Category:Reaction]]
 
[[Category:Reaction]]
−
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=ADENYL-KIN-RXN ADENYL-KIN-RXN] ==
+
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=1.8.1.4-RXN 1.8.1.4-RXN] ==
 
* direction:
 
* direction:
 
** LEFT-TO-RIGHT
 
** LEFT-TO-RIGHT
−
* common name:
 
−
** Adenylate kinase (Fragment) n
 
−
** ORF
 
−
** adenylate_kinase
 
−
** adenylate_kinase_4
 
−
** central_pair_complex_1
 
 
* ec number:
 
* ec number:
−
** [http://enzyme.expasy.org/EC/2.7.4.3 EC-2.7.4.3]
+
** [http://enzyme.expasy.org/EC/1.8.1.4 EC-1.8.1.4]
 
* Synonym(s):
 
* Synonym(s):
 +
** E3 component of α-ketoacid dehydrogenase complexes
 +
** Diaphorase
  
 
== Reaction Formula ==
 
== Reaction Formula ==
 
* With identifiers:
 
* With identifiers:
−
** 1 [[AMP]][c] '''+''' 1 [[ATP]][c] '''=>''' 2 [[ADP]][c]
+
** 1 [[Dihydro-Lipoyl-Proteins]][c] '''+''' 1 [[NAD]][c] '''=>''' 1 [[PROTON]][c] '''+''' 1 [[NADH]][c] '''+''' 1 [[Lipoyl-Protein-N6-lipoyllysine]][c]
 
* With common name(s):
 
* With common name(s):
−
** 1 AMP[c] '''+''' 1 ATP[c] '''=>''' 2 ADP[c]
+
** 1 a [lipoyl-carrier protein] N6-dihydrolipoyl-L-lysine[c] '''+''' 1 NAD+[c] '''=>''' 1 H+[c] '''+''' 1 NADH[c] '''+''' 1 a [lipoyl-carrier protein]-N6-lipoyl-L-lysine[c]
  
 
== Genes associated with this reaction  ==
 
== Genes associated with this reaction  ==
 
Genes have been associated with this reaction based on different elements listed below.
 
Genes have been associated with this reaction based on different elements listed below.
−
* Gene: [[Tiso_gene_4816]]
+
* Gene: [[Tiso_gene_9330]]
 
** Source: [[orthology-esiliculosus]]
 
** Source: [[orthology-esiliculosus]]
−
* Gene: [[Tiso_gene_5837]]
 
−
** Source: [[annotation-in-silico_annotation]]
 
−
*** Assignment: EC-NUMBER
 
−
** Source: [[annotation-experimental_annotation]]
 
−
*** Assignment: EC-NUMBER
 
−
** Source: [[orthology-creinhardtii]]
 
−
* Gene: [[Tiso_gene_694]]
 
−
** Source: [[annotation-in-silico_annotation]]
 
−
*** Assignment: EC-NUMBER
 
−
* Gene: [[Tiso_gene_805]]
 
−
** Source: [[annotation-in-silico_annotation]]
 
−
*** Assignment: EC-NUMBER
 
−
** Source: [[orthology-athaliana]]
 
−
** Source: [[orthology-synechocystis]]
 
−
** Source: [[orthology-esiliculosus]]
 
−
* Gene: [[Tiso_gene_14116]]
 
−
** Source: [[orthology-esiliculosus]]
 
−
* Gene: [[Tiso_gene_19036]]
 
−
** Source: [[annotation-in-silico_annotation]]
 
−
*** Assignment: EC-NUMBER
 
−
** Source: [[annotation-experimental_annotation]]
 
−
*** Assignment: EC-NUMBER
 
−
** Source: [[orthology-synechocystis]]
 
−
* Gene: [[Tiso_gene_5388]]
 
−
** Source: [[annotation-in-silico_annotation]]
 
−
*** Assignment: EC-NUMBER
 
−
** Source: [[orthology-synechocystis]]
 
−
** Source: [[orthology-creinhardtii]]
 
−
* Gene: [[Tiso_gene_13477]]
 
−
** Source: [[orthology-esiliculosus]]
 
−
* Gene: [[Tiso_gene_5081]]
 
−
** Source: [[orthology-esiliculosus]]
 
−
* Gene: [[Tiso_gene_5839]]
 
−
** Source: [[annotation-in-silico_annotation]]
 
−
*** Assignment: EC-NUMBER
 
−
** Source: [[orthology-creinhardtii]]
 
−
* Gene: [[Tiso_gene_19734]]
 
−
** Source: [[orthology-esiliculosus]]
 
−
* Gene: [[Tiso_gene_1453]]
 
−
** Source: [[orthology-esiliculosus]]
 
−
* Gene: [[Tiso_gene_3353]]
 
−
** Source: [[annotation-in-silico_annotation]]
 
−
*** Assignment: EC-NUMBER
 
−
* Gene: [[Tiso_gene_12257]]
 
−
** Source: [[orthology-athaliana]]
 
−
** Source: [[orthology-creinhardtii]]
 
−
* Gene: [[Tiso_gene_12256]]
 
−
** Source: [[annotation-experimental_annotation]]
 
−
*** Assignment: AUTOMATED-NAME-MATCH
 
−
* Gene: [[Tiso_gene_5387]]
 
−
** Source: [[annotation-in-silico_annotation]]
 
−
*** Assignment: EC-NUMBER
 
−
** Source: [[annotation-experimental_annotation]]
 
−
*** Assignment: EC-NUMBER
 
−
** Source: [[orthology-synechocystis]]
 
−
** Source: [[orthology-creinhardtii]]
 
−
* Gene: [[Tiso_gene_8576]]
 
−
** Source: [[annotation-in-silico_annotation]]
 
−
*** Assignment: AUTOMATED-NAME-MATCH
 
 
== Pathways  ==
 
== Pathways  ==
−
* [[PWY-7219]], adenosine ribonucleotides de novo biosynthesis: [http://metacyc.org/META/NEW-IMAGE?object=PWY-7219 PWY-7219]
 
−
** '''4''' reactions found over '''4''' reactions in the full pathway
 
 
== Reconstruction information  ==
 
== Reconstruction information  ==
 
* Category: [[orthology]]
 
* Category: [[orthology]]
−
** Source: [[orthology-athaliana]]
 
−
*** Tool: [[pantograph]]
 
−
** Source: [[orthology-creinhardtii]]
 
−
*** Tool: [[pantograph]]
 
−
** Source: [[orthology-synechocystis]]
 
−
*** Tool: [[pantograph]]
 
 
** Source: [[orthology-esiliculosus]]
 
** Source: [[orthology-esiliculosus]]
 
*** Tool: [[pantograph]]
 
*** Tool: [[pantograph]]
−
* Category: [[manual]]
 
−
** Source: [[manual-primary_network]]
 
−
* Category: [[annotation]]
 
−
** Source: [[annotation-in-silico_annotation]]
 
−
*** Tool: [[pathwaytools]]
 
−
** Source: [[annotation-experimental_annotation]]
 
−
*** Tool: [[pathwaytools]]
 
 
== External links  ==
 
== External links  ==
 
* RHEA:
 
* RHEA:
−
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=12973 12973]
+
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=33059 33059]
 +
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=15045 15045]
 
* LIGAND-RXN:
 
* LIGAND-RXN:
−
** [http://www.genome.jp/dbget-bin/www_bget?R00127 R00127]
+
** [http://www.genome.jp/dbget-bin/www_bget?R08550 R08550]
 +
** [http://www.genome.jp/dbget-bin/www_bget?R07618 R07618]
 +
** [http://www.genome.jp/dbget-bin/www_bget?R03815 R03815]
 +
** [http://www.genome.jp/dbget-bin/www_bget?R01698 R01698]
 
* UNIPROT:
 
* UNIPROT:
−
** [http://www.uniprot.org/uniprot/P05081 P05081]
+
** [http://www.uniprot.org/uniprot/P52992 P52992]
−
** [http://www.uniprot.org/uniprot/P20425 P20425]
+
** [http://www.uniprot.org/uniprot/O00087 O00087]
−
** [http://www.uniprot.org/uniprot/P08166 P08166]
+
** [http://www.uniprot.org/uniprot/O17953 O17953]
−
** [http://www.uniprot.org/uniprot/P38372 P38372]
+
** [http://www.uniprot.org/uniprot/O50311 O50311]
−
** [http://www.uniprot.org/uniprot/O27699 O27699]
+
** [http://www.uniprot.org/uniprot/Q41219 Q41219]
−
** [http://www.uniprot.org/uniprot/O29581 O29581]
+
** [http://www.uniprot.org/uniprot/O81413 O81413]
−
** [http://www.uniprot.org/uniprot/O59443 O59443]
+
** [http://www.uniprot.org/uniprot/P75393 P75393]
−
** [http://www.uniprot.org/uniprot/Q9YDD2 Q9YDD2]
+
** [http://www.uniprot.org/uniprot/Q9I1M1 Q9I1M1]
−
** [http://www.uniprot.org/uniprot/Q9UZN1 Q9UZN1]
+
** [http://www.uniprot.org/uniprot/Q7M0Q1 Q7M0Q1]
−
** [http://www.uniprot.org/uniprot/P58117 P58117]
+
** [http://www.uniprot.org/uniprot/Q9JZ09 Q9JZ09]
−
** [http://www.uniprot.org/uniprot/Q9PHM8 Q9PHM8]
+
** [http://www.uniprot.org/uniprot/Q04933 Q04933]
−
** [http://www.uniprot.org/uniprot/P54819 P54819]
+
** [http://www.uniprot.org/uniprot/P31023 P31023]
−
** [http://www.uniprot.org/uniprot/O66490 O66490]
+
** [http://www.uniprot.org/uniprot/P0A0E8 P0A0E8]
−
** [http://www.uniprot.org/uniprot/Q9V1V9 Q9V1V9]
+
** [http://www.uniprot.org/uniprot/P31046 P31046]
−
** [http://www.uniprot.org/uniprot/P49973 P49973]
+
** [http://www.uniprot.org/uniprot/P11959 P11959]
−
** [http://www.uniprot.org/uniprot/P24323 P24323]
+
** [http://www.uniprot.org/uniprot/Q48419 Q48419]
−
** [http://www.uniprot.org/uniprot/P47417 P47417]
+
** [http://www.uniprot.org/uniprot/P49819 P49819]
−
** [http://www.uniprot.org/uniprot/Q9HPA7 Q9HPA7]
+
** [http://www.uniprot.org/uniprot/P47513 P47513]
−
** [http://www.uniprot.org/uniprot/P29410 P29410]
+
** [http://www.uniprot.org/uniprot/Q59299 Q59299]
−
** [http://www.uniprot.org/uniprot/P16304 P16304]
+
** [http://www.uniprot.org/uniprot/P43784 P43784]
−
** [http://www.uniprot.org/uniprot/P00570 P00570]
+
** [http://www.uniprot.org/uniprot/Q9JU06 Q9JU06]
−
** [http://www.uniprot.org/uniprot/P27142 P27142]
+
** [http://www.uniprot.org/uniprot/Q60154 Q60154]
−
** [http://www.uniprot.org/uniprot/P07170 P07170]
+
** [http://www.uniprot.org/uniprot/Q9RRG6 Q9RRG6]
−
** [http://www.uniprot.org/uniprot/P12115 P12115]
+
** [http://www.uniprot.org/uniprot/P21880 P21880]
−
** [http://www.uniprot.org/uniprot/P69441 P69441]
+
** [http://www.uniprot.org/uniprot/P09063 P09063]
−
** [http://www.uniprot.org/uniprot/P00568 P00568]
+
** [http://www.uniprot.org/uniprot/P09623 P09623]
−
** [http://www.uniprot.org/uniprot/P10772 P10772]
+
** [http://www.uniprot.org/uniprot/P09622 P09622]
−
** [http://www.uniprot.org/uniprot/P00571 P00571]
+
** [http://www.uniprot.org/uniprot/P0A9P0 P0A9P0]
−
** [http://www.uniprot.org/uniprot/P00569 P00569]
+
** [http://www.uniprot.org/uniprot/P18925 P18925]
−
** [http://www.uniprot.org/uniprot/P10251 P10251]
+
** [http://www.uniprot.org/uniprot/Q9JZP5 Q9JZP5]
−
** [http://www.uniprot.org/uniprot/P43417 P43417]
+
** [http://www.uniprot.org/uniprot/Q58053 Q58053]
−
** [http://www.uniprot.org/uniprot/P49974 P49974]
+
** [http://www.uniprot.org/uniprot/Q59099 Q59099]
−
** [http://www.uniprot.org/uniprot/P33107 P33107]
+
** [http://www.uniprot.org/uniprot/P35484 P35484]
−
** [http://www.uniprot.org/uniprot/P27143 P27143]
+
** [http://www.uniprot.org/uniprot/Q7M0Y3 Q7M0Y3]
−
** [http://www.uniprot.org/uniprot/P26364 P26364]
+
** [http://www.uniprot.org/uniprot/Q9JUT1 Q9JUT1]
−
** [http://www.uniprot.org/uniprot/P33075 P33075]
+
** [http://www.uniprot.org/uniprot/Q9ZD83 Q9ZD83]
−
** [http://www.uniprot.org/uniprot/P35140 P35140]
+
** [http://www.uniprot.org/uniprot/Q7M0Y4 Q7M0Y4]
−
** [http://www.uniprot.org/uniprot/P35141 P35141]
+
** [http://www.uniprot.org/uniprot/Q9JUT5 Q9JUT5]
−
** [http://www.uniprot.org/uniprot/P39068 P39068]
+
** [http://www.uniprot.org/uniprot/Q04829 Q04829]
−
** [http://www.uniprot.org/uniprot/P34346 P34346]
+
** [http://www.uniprot.org/uniprot/P31052 P31052]
−
** [http://www.uniprot.org/uniprot/P43188 P43188]
+
** [http://www.uniprot.org/uniprot/Q7M0Y5 Q7M0Y5]
−
** [http://www.uniprot.org/uniprot/P69344 P69344]
+
** [http://www.uniprot.org/uniprot/P09624 P09624]
−
** [http://www.uniprot.org/uniprot/P0A0U6 P0A0U6]
+
−
** [http://www.uniprot.org/uniprot/P49979 P49979]
+
−
** [http://www.uniprot.org/uniprot/Q50299 Q50299]
+
−
** [http://www.uniprot.org/uniprot/P43412 P43412]
+
−
** [http://www.uniprot.org/uniprot/P72641 P72641]
+
 
{{#set: direction=LEFT-TO-RIGHT}}
 
{{#set: direction=LEFT-TO-RIGHT}}
−
{{#set: common name=Adenylate kinase (Fragment) n}}
+
{{#set: ec number=EC-1.8.1.4}}
−
{{#set: common name=ORF}}
+
{{#set: common name=E3 component of α-ketoacid dehydrogenase complexes|Diaphorase}}
−
{{#set: common name=adenylate_kinase}}
+
{{#set: gene associated=Tiso_gene_9330}}
−
{{#set: common name=adenylate_kinase_4}}
+
{{#set: in pathway=}}
−
{{#set: common name=central_pair_complex_1}}
+
{{#set: reconstruction category=orthology}}
−
{{#set: ec number=EC-2.7.4.3}}
+
{{#set: reconstruction source=orthology-esiliculosus}}
−
{{#set: gene associated=Tiso_gene_4816|Tiso_gene_5837|Tiso_gene_694|Tiso_gene_805|Tiso_gene_14116|Tiso_gene_19036|Tiso_gene_5388|Tiso_gene_13477|Tiso_gene_5081|Tiso_gene_5839|Tiso_gene_19734|Tiso_gene_1453|Tiso_gene_3353|Tiso_gene_12257|Tiso_gene_12256|Tiso_gene_5387|Tiso_gene_8576}}
+
{{#set: reconstruction tool=pantograph}}
−
{{#set: in pathway=PWY-7219}}
+
−
{{#set: reconstruction category=orthology|manual|annotation}}
+
−
{{#set: reconstruction source=annotation-experimental_annotation|orthology-esiliculosus|annotation-in-silico_annotation|orthology-athaliana|orthology-synechocystis|manual-primary_network|orthology-creinhardtii}}
+
−
{{#set: reconstruction tool=pantograph|pathwaytools}}
+

Latest revision as of 21:10, 21 March 2018

Reaction 1.8.1.4-RXN

  • direction:
    • LEFT-TO-RIGHT
  • ec number:
  • Synonym(s):
    • E3 component of α-ketoacid dehydrogenase complexes
    • Diaphorase

Reaction Formula

Genes associated with this reaction

Genes have been associated with this reaction based on different elements listed below.

Pathways

Reconstruction information

External links





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