Difference between revisions of "2-KETO-ADIPATE-DEHYDROG-RXN"

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(Created page with "Category:Gene == Gene Tiso_gene_38 == * right end position: ** 46733 * transcription direction: ** NEGATIVE * left end position: ** 42206 * centisome position: ** 85.97152...")
(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=2-KETO-ADIPATE-DEHYDROG-RXN 2-KETO-ADIPATE-DEHYDROG-RXN] == * direction: ** LEFT-TO-RIGHT * Synonym...")
 
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[[Category:Gene]]
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[[Category:Reaction]]
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== Gene Tiso_gene_38 ==
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== Reaction [http://metacyc.org/META/NEW-IMAGE?object=2-KETO-ADIPATE-DEHYDROG-RXN 2-KETO-ADIPATE-DEHYDROG-RXN] ==
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* right end position:
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* direction:
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** 46733
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** LEFT-TO-RIGHT
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* transcription direction:
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** NEGATIVE
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* left end position:
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** 42206
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* centisome position:
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** 85.97152   
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* Synonym(s):
 
* Synonym(s):
  
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== Reactions associated ==
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== Reaction Formula ==
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* Reaction: [[ATPASE-RXN]]
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* With identifiers:
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** Source: [[annotation-in-silico_annotation]]
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** 1 [[2K-ADIPATE]][c] '''+''' 1 [[NAD]][c] '''+''' 1 [[CO-A]][c] '''=>''' 1 [[CARBON-DIOXIDE]][c] '''+''' 1 [[NADH]][c] '''+''' 1 [[GLUTARYL-COA]][c]
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*** Assignment: ec-number
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* With common name(s):
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* Reaction: [[NUCLEOSIDE-TRIPHOSPHATASE-RXN]]
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** 1 2-oxoadipate[c] '''+''' 1 NAD+[c] '''+''' 1 coenzyme A[c] '''=>''' 1 CO2[c] '''+''' 1 NADH[c] '''+''' 1 glutaryl-CoA[c]
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** Source: [[annotation-in-silico_annotation]]
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*** Assignment: ec-number
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== Genes associated with this reaction  ==
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* Reaction: [[RXN-12195]]
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Genes have been associated with this reaction based on different elements listed below.
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** Source: [[annotation-in-silico_annotation]]
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* Gene: [[Tiso_gene_9330]]
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*** Assignment: ec-number
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** Source: [[orthology-athaliana]]
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* Reaction: [[RXN-12196]]
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* Gene: [[Tiso_gene_10209]]
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** Source: [[annotation-in-silico_annotation]]
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** Source: [[orthology-athaliana]]
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*** Assignment: ec-number
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== Pathways  ==
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* Reaction: [[RXN0-5462]]
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* [[PWY-5652]], 2-amino-3-carboxymuconate semialdehyde degradation to glutaryl-CoA: [http://metacyc.org/META/NEW-IMAGE?object=PWY-5652 PWY-5652]
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** '''1''' reactions found over '''5''' reactions in the full pathway
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* [[PWY66-425]], L-lysine degradation II (L-pipecolate pathway): [http://metacyc.org/META/NEW-IMAGE?object=PWY66-425 PWY66-425]
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** '''3''' reactions found over '''8''' reactions in the full pathway
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* [[LYSINE-DEG1-PWY]], L-lysine degradation XI (mammalian): [http://metacyc.org/META/NEW-IMAGE?object=LYSINE-DEG1-PWY LYSINE-DEG1-PWY]
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** '''5''' reactions found over '''5''' reactions in the full pathway
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== Reconstruction information  ==
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* Category: [[orthology]]
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** Source: [[orthology-athaliana]]
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*** Tool: [[pantograph]]
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* Category: [[annotation]]
 
** Source: [[annotation-in-silico_annotation]]
 
** Source: [[annotation-in-silico_annotation]]
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*** Assignment: ec-number
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*** Tool: [[pathwaytools]]
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== Pathways associated ==
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* [[PWY-7184]]
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* [[PWY-7198]]
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* [[PWY-6545]]
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* [[PWY-7210]]
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== External links  ==
 
== External links  ==
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{{#set: right end position=46733}}
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* RHEA:
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{{#set: transcription direction=NEGATIVE}}
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** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=30795 30795]
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{{#set: left end position=42206}}
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* LIGAND-RXN:
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{{#set: centisome position=85.97152    }}
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** [http://www.genome.jp/dbget-bin/www_bget?R01933 R01933]
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{{#set: reaction associated=ATPASE-RXN|NUCLEOSIDE-TRIPHOSPHATASE-RXN|RXN-12195|RXN-12196|RXN0-5462}}
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{{#set: direction=LEFT-TO-RIGHT}}
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{{#set: pathway associated=PWY-7184|PWY-7198|PWY-6545|PWY-7210}}
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{{#set: gene associated=Tiso_gene_9330|Tiso_gene_10209}}
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{{#set: in pathway=PWY-5652|PWY66-425|LYSINE-DEG1-PWY}}
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{{#set: reconstruction category=orthology|annotation}}
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{{#set: reconstruction source=orthology-athaliana|annotation-in-silico_annotation}}
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{{#set: reconstruction tool=pantograph|pathwaytools}}

Latest revision as of 21:08, 21 March 2018

Reaction 2-KETO-ADIPATE-DEHYDROG-RXN

  • direction:
    • LEFT-TO-RIGHT
  • Synonym(s):

Reaction Formula

Genes associated with this reaction

Genes have been associated with this reaction based on different elements listed below.

Pathways

  • PWY-5652, 2-amino-3-carboxymuconate semialdehyde degradation to glutaryl-CoA: PWY-5652
    • 1 reactions found over 5 reactions in the full pathway
  • PWY66-425, L-lysine degradation II (L-pipecolate pathway): PWY66-425
    • 3 reactions found over 8 reactions in the full pathway
  • LYSINE-DEG1-PWY, L-lysine degradation XI (mammalian): LYSINE-DEG1-PWY
    • 5 reactions found over 5 reactions in the full pathway

Reconstruction information

External links




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