Difference between revisions of "2.4.1.225-RXN"

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(Created page with "Category:Gene == Gene Tiso_gene_12685 == * right end position: ** 2656 * transcription direction: ** POSITIVE * left end position: ** 1155 * centisome position: ** 17.0379...")
(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=2.4.1.225-RXN 2.4.1.225-RXN] == * direction: ** LEFT-TO-RIGHT * common name: ** exostosin-1 * ec nu...")
 
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[[Category:Gene]]
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[[Category:Reaction]]
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== Gene Tiso_gene_12685 ==
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== Reaction [http://metacyc.org/META/NEW-IMAGE?object=2.4.1.225-RXN 2.4.1.225-RXN] ==
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* right end position:
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* direction:
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** 2656
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** LEFT-TO-RIGHT
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* transcription direction:
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* common name:
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** POSITIVE
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** exostosin-1
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* left end position:
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* ec number:
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** 1155
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** [http://enzyme.expasy.org/EC/2.4.1.225 EC-2.4.1.225]
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* centisome position:
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** 17.037912   
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* Synonym(s):
 
* Synonym(s):
  
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== Reactions associated ==
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== Reaction Formula ==
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* Reaction: [[UDPNACETYLMURAMATEDEHYDROG-RXN]]
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* With identifiers:
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** 1 [[GlcNAc-GlcA-Gal-Gal-Xyl-Protein]][c] '''+''' 1 [[UDP-GLUCURONATE]][c] '''=>''' 1 [[PROTON]][c] '''+''' 1 [[GlcA-GlcNAc-GlcA-Gal-Gal-Xyl-Protein]][c] '''+''' 1 [[UDP]][c]
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* With common name(s):
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** 1 a [protein]-3-O-(α-D-GlcNAc-(1→4)-β-D-GlcA-(1→3)-β-D-Gal-(1→3)-β-D-Gal-(1→4)-β-D-Xyl)-L-serine[c] '''+''' 1 UDP-α-D-glucuronate[c] '''=>''' 1 H+[c] '''+''' 1 a [protein]-3-O-(β-D-GlcA-(1→3)-α-D-GlcNAc-(1→4)-β-D-GlcA-(1→3)-β-D-Gal-(1→3)-β-D-Gal-(1→4)-β-D-Xyl)-L-serine[c] '''+''' 1 UDP[c]
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== Genes associated with this reaction  ==
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Genes have been associated with this reaction based on different elements listed below.
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* Gene: [[Tiso_gene_6495]]
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** Source: [[annotation-in-silico_annotation]]
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*** Assignment: EC-NUMBER
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== Pathways  ==
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* [[PWY-6558]], heparan sulfate biosynthesis (late stages): [http://metacyc.org/META/NEW-IMAGE?object=PWY-6558 PWY-6558]
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** '''3''' reactions found over '''13''' reactions in the full pathway
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== Reconstruction information  ==
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* Category: [[annotation]]
 
** Source: [[annotation-in-silico_annotation]]
 
** Source: [[annotation-in-silico_annotation]]
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*** Assignment: ec-number
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*** Tool: [[pathwaytools]]
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== Pathways associated ==
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* [[PWY-6386]]
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* [[PWY-6387]]
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== External links  ==
 
== External links  ==
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{{#set: right end position=2656}}
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* LIGAND-RXN:
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{{#set: transcription direction=POSITIVE}}
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** [http://www.genome.jp/dbget-bin/www_bget?R07335 R07335]
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{{#set: left end position=1155}}
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{{#set: direction=LEFT-TO-RIGHT}}
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{{#set: centisome position=17.037912    }}
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{{#set: common name=exostosin-1}}
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{{#set: reaction associated=UDPNACETYLMURAMATEDEHYDROG-RXN}}
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{{#set: ec number=EC-2.4.1.225}}
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{{#set: pathway associated=PWY-6386|PWY-6387}}
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{{#set: gene associated=Tiso_gene_6495}}
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{{#set: in pathway=PWY-6558}}
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{{#set: reconstruction category=annotation}}
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{{#set: reconstruction source=annotation-in-silico_annotation}}
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{{#set: reconstruction tool=pathwaytools}}

Latest revision as of 21:22, 21 March 2018

Reaction 2.4.1.225-RXN

  • direction:
    • LEFT-TO-RIGHT
  • common name:
    • exostosin-1
  • ec number:
  • Synonym(s):

Reaction Formula

  • With identifiers:
  • With common name(s):
    • 1 a [protein]-3-O-(α-D-GlcNAc-(1→4)-β-D-GlcA-(1→3)-β-D-Gal-(1→3)-β-D-Gal-(1→4)-β-D-Xyl)-L-serine[c] + 1 UDP-α-D-glucuronate[c] => 1 H+[c] + 1 a [protein]-3-O-(β-D-GlcA-(1→3)-α-D-GlcNAc-(1→4)-β-D-GlcA-(1→3)-β-D-Gal-(1→3)-β-D-Gal-(1→4)-β-D-Xyl)-L-serine[c] + 1 UDP[c]

Genes associated with this reaction

Genes have been associated with this reaction based on different elements listed below.

Pathways

  • PWY-6558, heparan sulfate biosynthesis (late stages): PWY-6558
    • 3 reactions found over 13 reactions in the full pathway

Reconstruction information

External links





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