Difference between revisions of "2.5.1.39-RXN"

From metabolic_network
Jump to: navigation, search
(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-11135 RXN-11135] == * direction: ** REVERSIBLE * common name: ** dna_helicase * ec number: ** [...")
(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=2.5.1.39-RXN 2.5.1.39-RXN] == * direction: ** LEFT-TO-RIGHT * ec number: ** [http://enzyme.expasy.o...")
 
(One intermediate revision by the same user not shown)
Line 1: Line 1:
 
[[Category:Reaction]]
 
[[Category:Reaction]]
−
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-11135 RXN-11135] ==
+
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=2.5.1.39-RXN 2.5.1.39-RXN] ==
 
* direction:
 
* direction:
−
** REVERSIBLE
+
** LEFT-TO-RIGHT
−
* common name:
+
−
** dna_helicase
+
 
* ec number:
 
* ec number:
−
** [http://enzyme.expasy.org/EC/3.6.4.12 EC-3.6.4.12]
+
** [http://enzyme.expasy.org/EC/2.5.1.39 EC-2.5.1.39]
 
* Synonym(s):
 
* Synonym(s):
  
 
== Reaction Formula ==
 
== Reaction Formula ==
 
* With identifiers:
 
* With identifiers:
−
** 1 [[Double-helix-DNA]][c] '''+''' 1 [[WATER]][c] '''+''' 1 [[ATP]][c] '''<=>''' 1 [[Unwound-DNA]][c] '''+''' 1 [[PROTON]][c] '''+''' 1 [[Pi]][c] '''+''' 1 [[ADP]][c]
+
** 1 [[SOLANESYL-PYROPHOSPHATE]][c] '''+''' 1 [[4-hydroxybenzoate]][c] '''=>''' 1 [[NONAPRENYL-4-HYDROXYBENZOATE]][c] '''+''' 1 [[PPI]][c]
 
* With common name(s):
 
* With common name(s):
−
** 1 a double-helix DNA[c] '''+''' 1 H2O[c] '''+''' 1 ATP[c] '''<=>''' 1 an unwound double-stranded DNA[c] '''+''' 1 H+[c] '''+''' 1 phosphate[c] '''+''' 1 ADP[c]
+
** 1 all-trans-nonaprenyl diphosphate[c] '''+''' 1 4-hydroxybenzoate[c] '''=>''' 1 3-nonaprenyl-4-hydroxybenzoate[c] '''+''' 1 diphosphate[c]
  
 
== Genes associated with this reaction  ==
 
== Genes associated with this reaction  ==
 
Genes have been associated with this reaction based on different elements listed below.
 
Genes have been associated with this reaction based on different elements listed below.
−
* [[Tiso_gene_7081]]
+
* Gene: [[Tiso_gene_11582]]
−
** IN-SILICO_ANNOTATION
+
** Source: [[orthology-synechocystis]]
−
***AUTOMATED-NAME-MATCH
+
−
* [[Tiso_gene_4087]]
+
−
** IN-SILICO_ANNOTATION
+
−
***AUTOMATED-NAME-MATCH
+
−
* [[Tiso_gene_4088]]
+
−
** IN-SILICO_ANNOTATION
+
−
***AUTOMATED-NAME-MATCH
+
−
* [[Tiso_gene_1799]]
+
−
** [[pantograph]]-[[esiliculosus]]
+
−
* [[Tiso_gene_1324]]
+
−
** IN-SILICO_ANNOTATION
+
−
***AUTOMATED-NAME-MATCH
+
−
* [[Tiso_gene_7734]]
+
−
** [[pantograph]]-[[esiliculosus]]
+
 
== Pathways  ==
 
== Pathways  ==
 +
* [[PWY-5871]], ubiquinol-9 biosynthesis (eukaryotic): [http://metacyc.org/META/NEW-IMAGE?object=PWY-5871 PWY-5871]
 +
** '''1''' reactions found over '''8''' reactions in the full pathway
 +
* [[PWY-5856]], ubiquinol-9 biosynthesis (prokaryotic): [http://metacyc.org/META/NEW-IMAGE?object=PWY-5856 PWY-5856]
 +
** '''1''' reactions found over '''8''' reactions in the full pathway
 +
* [[PWY-6978]], plastoquinol-9 biosynthesis II: [http://metacyc.org/META/NEW-IMAGE?object=PWY-6978 PWY-6978]
 +
** '''2''' reactions found over '''5''' reactions in the full pathway
 
== Reconstruction information  ==
 
== Reconstruction information  ==
 
* Category: [[orthology]]
 
* Category: [[orthology]]
−
** Source: [[orthology-esiliculosus]]
+
** Source: [[orthology-synechocystis]]
 
*** Tool: [[pantograph]]
 
*** Tool: [[pantograph]]
−
* Category: [[annotation]]
 
−
** Source: [[annotation-in-silico_annotation]]
 
−
*** Tool: [[pathwaytools]]
 
 
== External links  ==
 
== External links  ==
−
{{#set: direction=REVERSIBLE}}
+
* RHEA:
−
{{#set: common name=dna_helicase}}
+
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=17709 17709]
−
{{#set: ec number=EC-3.6.4.12}}
+
* LIGAND-RXN:
−
{{#set: gene associated=Tiso_gene_7081|Tiso_gene_4087|Tiso_gene_4088|Tiso_gene_1799|Tiso_gene_1324|Tiso_gene_7734}}
+
** [http://www.genome.jp/dbget-bin/www_bget?R07273 R07273]
−
{{#set: in pathway=}}
+
{{#set: direction=LEFT-TO-RIGHT}}
−
{{#set: reconstruction category=orthology|annotation}}
+
{{#set: ec number=EC-2.5.1.39}}
−
{{#set: reconstruction source=annotation-in-silico_annotation|orthology-esiliculosus}}
+
{{#set: gene associated=Tiso_gene_11582}}
−
{{#set: reconstruction tool=pantograph|pathwaytools}}
+
{{#set: in pathway=PWY-5871|PWY-5856|PWY-6978}}
 +
{{#set: reconstruction category=orthology}}
 +
{{#set: reconstruction source=orthology-synechocystis}}
 +
{{#set: reconstruction tool=pantograph}}

Latest revision as of 21:23, 21 March 2018

Reaction 2.5.1.39-RXN

  • direction:
    • LEFT-TO-RIGHT
  • ec number:
  • Synonym(s):

Reaction Formula

Genes associated with this reaction

Genes have been associated with this reaction based on different elements listed below.

Pathways

  • PWY-5871, ubiquinol-9 biosynthesis (eukaryotic): PWY-5871
    • 1 reactions found over 8 reactions in the full pathway
  • PWY-5856, ubiquinol-9 biosynthesis (prokaryotic): PWY-5856
    • 1 reactions found over 8 reactions in the full pathway
  • PWY-6978, plastoquinol-9 biosynthesis II: PWY-6978
    • 2 reactions found over 5 reactions in the full pathway

Reconstruction information

External links




Retrieved from "http://gem-aureme.irisa.fr/tisogem/index.php?title=2.5.1.39-RXN&oldid=48340"