Difference between revisions of "2TRANSKETO-RXN"

From metabolic_network
Jump to: navigation, search
(Created page with "Category:Gene == Gene Tiso_gene_2775 == * left end position: ** 16196 * transcription direction: ** POSITIVE * right end position: ** 17424 * centisome position: ** 87.640...")
(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=2TRANSKETO-RXN 2TRANSKETO-RXN] == * direction: ** REVERSIBLE * common name: ** transketolase * ec n...")
 
(One intermediate revision by the same user not shown)
Line 1: Line 1:
−
[[Category:Gene]]
+
[[Category:Reaction]]
−
== Gene Tiso_gene_2775 ==
+
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=2TRANSKETO-RXN 2TRANSKETO-RXN] ==
−
* left end position:
+
* direction:
−
** 16196
+
** REVERSIBLE
−
* transcription direction:
+
* common name:
−
** POSITIVE
+
** transketolase
−
* right end position:
+
* ec number:
−
** 17424
+
** [http://enzyme.expasy.org/EC/2.2.1.1 EC-2.2.1.1]
−
* centisome position:
+
−
** 87.64070   
+
 
* Synonym(s):
 
* Synonym(s):
  
−
== Reactions associated ==
+
== Reaction Formula ==
−
* [[GSHTRAN-RXN]]
+
* With identifiers:
−
** in-silico_annotation
+
** 1 [[XYLULOSE-5-PHOSPHATE]][c] '''+''' 1 [[ERYTHROSE-4P]][c] '''<=>''' 1 [[FRUCTOSE-6P]][c] '''+''' 1 [[GAP]][c]
−
***automated-name-match
+
* With common name(s):
−
** [[pantograph]]-[[athaliana]]
+
** 1 D-xylulose 5-phosphate[c] '''+''' 1 D-erythrose 4-phosphate[c] '''<=>''' 1 &beta;-D-fructofuranose 6-phosphate[c] '''+''' 1 D-glyceraldehyde 3-phosphate[c]
−
* [[GST-RXN]]
+
 
−
** in-silico_annotation
+
== Genes associated with this reaction  ==
−
***automated-name-match
+
Genes have been associated with this reaction based on different elements listed below.
−
* [[RXN-13673]]
+
* Gene: [[Tiso_gene_11559]]
−
** in-silico_annotation
+
** Source: [[annotation-experimental_annotation]]
−
***automated-name-match
+
*** Assignment: EC-NUMBER
−
* [[RXN-15680]]
+
* Gene: [[Tiso_gene_5008]]
−
** in-silico_annotation
+
** Source: [[annotation-in-silico_annotation]]
−
***automated-name-match
+
*** Assignment: EC-NUMBER
−
== Pathways associated ==
+
** Source: [[annotation-experimental_annotation]]
−
* [[PWY-7112]]
+
*** Assignment: EC-NUMBER
−
* [[PWY-6842]]
+
** Source: [[orthology-athaliana]]
−
* [[PWY-4061]]
+
** Source: [[orthology-athaliana]]
−
* [[PWY-7533]]
+
** Source: [[orthology-creinhardtii]]
 +
== Pathways  ==
 +
* [[PWY-6901]], superpathway of glucose and xylose degradation: [http://metacyc.org/META/NEW-IMAGE?object=PWY-6901 PWY-6901]
 +
** '''8''' reactions found over '''12''' reactions in the full pathway
 +
* [[CALVIN-PWY]], Calvin-Benson-Bassham cycle: [http://metacyc.org/META/NEW-IMAGE?object=CALVIN-PWY CALVIN-PWY]
 +
** '''13''' reactions found over '''13''' reactions in the full pathway
 +
* [[P21-PWY]], pentose phosphate pathway (partial): [http://metacyc.org/META/NEW-IMAGE?object=P21-PWY P21-PWY]
 +
** '''3''' reactions found over '''3''' reactions in the full pathway
 +
* [[PWY-5723]], Rubisco shunt: [http://metacyc.org/META/NEW-IMAGE?object=PWY-5723 PWY-5723]
 +
** '''10''' reactions found over '''10''' reactions in the full pathway
 +
* [[PWY-1861]], formaldehyde assimilation II (RuMP Cycle): [http://metacyc.org/META/NEW-IMAGE?object=PWY-1861 PWY-1861]
 +
** '''7''' reactions found over '''9''' reactions in the full pathway
 +
* [[P185-PWY]], formaldehyde assimilation III (dihydroxyacetone cycle): [http://metacyc.org/META/NEW-IMAGE?object=P185-PWY P185-PWY]
 +
** '''11''' reactions found over '''12''' reactions in the full pathway
 +
* [[NONOXIPENT-PWY]], pentose phosphate pathway (non-oxidative branch): [http://metacyc.org/META/NEW-IMAGE?object=NONOXIPENT-PWY NONOXIPENT-PWY]
 +
** '''5''' reactions found over '''5''' reactions in the full pathway
 +
== Reconstruction information  ==
 +
* Category: [[orthology]]
 +
** Source: [[orthology-athaliana]]
 +
*** Tool: [[pantograph]]
 +
** Source: [[orthology-creinhardtii]]
 +
*** Tool: [[pantograph]]
 +
* Category: [[manual]]
 +
** Source: [[manual-primary_network]]
 +
* Category: [[annotation]]
 +
** Source: [[annotation-experimental_annotation]]
 +
*** Tool: [[pathwaytools]]
 +
** Source: [[annotation-in-silico_annotation]]
 +
*** Tool: [[pathwaytools]]
 
== External links  ==
 
== External links  ==
−
{{#set: left end position=16196}}
+
* RHEA:
−
{{#set: transcription direction=POSITIVE}}
+
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=27626 27626]
−
{{#set: right end position=17424}}
+
* LIGAND-RXN:
−
{{#set: centisome position=87.64070    }}
+
** [http://www.genome.jp/dbget-bin/www_bget?R01830 R01830]
−
{{#set: reaction associated=GSHTRAN-RXN|GST-RXN|RXN-13673|RXN-15680}}
+
** [http://www.genome.jp/dbget-bin/www_bget?R01067 R01067]
−
{{#set: pathway associated=PWY-7112|PWY-6842|PWY-4061|PWY-7533}}
+
* UNIPROT:
 +
** [http://www.uniprot.org/uniprot/P22976 P22976]
 +
** [http://www.uniprot.org/uniprot/P29401 P29401]
 +
** [http://www.uniprot.org/uniprot/P33570 P33570]
 +
** [http://www.uniprot.org/uniprot/P21725 P21725]
 +
** [http://www.uniprot.org/uniprot/Q58094 Q58094]
 +
** [http://www.uniprot.org/uniprot/Q9JTR1 Q9JTR1]
 +
** [http://www.uniprot.org/uniprot/Q9CF56 Q9CF56]
 +
** [http://www.uniprot.org/uniprot/P21726 P21726]
 +
** [http://www.uniprot.org/uniprot/P47312 P47312]
 +
** [http://www.uniprot.org/uniprot/Q9PM31 Q9PM31]
 +
** [http://www.uniprot.org/uniprot/P43757 P43757]
 +
** [http://www.uniprot.org/uniprot/Q58092 Q58092]
 +
** [http://www.uniprot.org/uniprot/P45694 P45694]
 +
** [http://www.uniprot.org/uniprot/Q52723 Q52723]
 +
** [http://www.uniprot.org/uniprot/Q9Z475 Q9Z475]
 +
** [http://www.uniprot.org/uniprot/P34736 P34736]
 +
** [http://www.uniprot.org/uniprot/P33315 P33315]
 +
** [http://www.uniprot.org/uniprot/Q42675 Q42675]
 +
** [http://www.uniprot.org/uniprot/Q42676 Q42676]
 +
** [http://www.uniprot.org/uniprot/Q42677 Q42677]
 +
** [http://www.uniprot.org/uniprot/P46708 P46708]
 +
** [http://www.uniprot.org/uniprot/P75611 P75611]
 +
** [http://www.uniprot.org/uniprot/P73282 P73282]
 +
** [http://www.uniprot.org/uniprot/Q49047 Q49047]
 +
** [http://www.uniprot.org/uniprot/O20250 O20250]
 +
** [http://www.uniprot.org/uniprot/O78327 O78327]
 +
** [http://www.uniprot.org/uniprot/Q9URM2 Q9URM2]
 +
** [http://www.uniprot.org/uniprot/Q9RFB7 Q9RFB7]
 +
** [http://www.uniprot.org/uniprot/P23254 P23254]
 +
** [http://www.uniprot.org/uniprot/P27302 P27302]
 +
** [http://www.uniprot.org/uniprot/P29277 P29277]
 +
{{#set: direction=REVERSIBLE}}
 +
{{#set: common name=transketolase}}
 +
{{#set: ec number=EC-2.2.1.1}}
 +
{{#set: gene associated=Tiso_gene_11559|Tiso_gene_5008}}
 +
{{#set: in pathway=PWY-6901|CALVIN-PWY|P21-PWY|PWY-5723|PWY-1861|P185-PWY|NONOXIPENT-PWY}}
 +
{{#set: reconstruction category=orthology|manual|annotation}}
 +
{{#set: reconstruction source=orthology-creinhardtii|orthology-athaliana|annotation-in-silico_annotation|manual-primary_network|annotation-experimental_annotation}}
 +
{{#set: reconstruction tool=pantograph|pathwaytools}}

Latest revision as of 20:26, 21 March 2018

Reaction 2TRANSKETO-RXN

  • direction:
    • REVERSIBLE
  • common name:
    • transketolase
  • ec number:
  • Synonym(s):

Reaction Formula

  • With identifiers:
  • With common name(s):
    • 1 D-xylulose 5-phosphate[c] + 1 D-erythrose 4-phosphate[c] <=> 1 β-D-fructofuranose 6-phosphate[c] + 1 D-glyceraldehyde 3-phosphate[c]

Genes associated with this reaction

Genes have been associated with this reaction based on different elements listed below.

Pathways

  • PWY-6901, superpathway of glucose and xylose degradation: PWY-6901
    • 8 reactions found over 12 reactions in the full pathway
  • CALVIN-PWY, Calvin-Benson-Bassham cycle: CALVIN-PWY
    • 13 reactions found over 13 reactions in the full pathway
  • P21-PWY, pentose phosphate pathway (partial): P21-PWY
    • 3 reactions found over 3 reactions in the full pathway
  • PWY-5723, Rubisco shunt: PWY-5723
    • 10 reactions found over 10 reactions in the full pathway
  • PWY-1861, formaldehyde assimilation II (RuMP Cycle): PWY-1861
    • 7 reactions found over 9 reactions in the full pathway
  • P185-PWY, formaldehyde assimilation III (dihydroxyacetone cycle): P185-PWY
    • 11 reactions found over 12 reactions in the full pathway
  • NONOXIPENT-PWY, pentose phosphate pathway (non-oxidative branch): NONOXIPENT-PWY
    • 5 reactions found over 5 reactions in the full pathway

Reconstruction information

External links





Retrieved from "http://gem-aureme.irisa.fr/tisogem/index.php?title=2TRANSKETO-RXN&oldid=41602"