Difference between revisions of "3-Ketoglutaryl-ACP-methyl-ester"

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(Created page with "Category:Metabolite == Metabolite [http://metacyc.org/META/NEW-IMAGE?object=HOMOGENTISATE HOMOGENTISATE] == * smiles: ** C1(C(=CC(=C(C=1)O)CC([O-])=O)O) * inchi key: ** In...")
(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-9951 RXN-9951] == * direction: ** REVERSIBLE * common name: ** isocitrate dehydrogenase (NADP+)...")
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[[Category:Metabolite]]
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[[Category:Reaction]]
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== Metabolite [http://metacyc.org/META/NEW-IMAGE?object=HOMOGENTISATE HOMOGENTISATE] ==
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== Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-9951 RXN-9951] ==
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* smiles:
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* direction:
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** C1(C(=CC(=C(C=1)O)CC([O-])=O)O)
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** REVERSIBLE
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* inchi key:
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** InChIKey=IGMNYECMUMZDDF-UHFFFAOYSA-M
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* common name:
 
* common name:
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** homogentisate
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** isocitrate dehydrogenase (NADP+)
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* molecular weight:
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** ORF
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** 167.141   
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* Synonym(s):
 
* Synonym(s):
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** 2,5-dihydroxyphenylacetate
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** oxalosuccinate decarboxylase
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** oxalsuccinic decarboxylase
 +
** isocitrate (NADP) dehydrogenase
 +
** isocitrate (nicotinamide adenine dinucleotide phosphate) dehydrogenase
 +
** NADP-specific isocitrate dehydrogenase
 +
** NADP-linked isocitrate dehydrogenase
 +
** NADP isocitric dehydrogenase
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** isocitrate dehydrogenase (NADP-dependent)
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** NADP-dependent isocitric dehydrogenase
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** triphosphopyridine nucleotide-linked isocitrate dehydrogenase-oxalosuccinate carboxylase
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** NADP+-linked isocitrate dehydrogenase
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** IDH (ambiguous)
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** dual-cofactor-specific isocitrate dehydrogenase
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** NADP+-ICDH
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** NADP+-IDH
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** IDP
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** IDP1
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** IDP2
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** IDP3
  
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== Reaction(s) known to consume the compound ==
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== Reaction Formula ==
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* [[HGDO]]
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* With identifiers:
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* [[HOMOGENTISATE-12-DIOXYGENASE-RXN]]
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** 1 [[THREO-DS-ISO-CITRATE]][c] '''+''' 1 [[NADP]][c] '''<=>''' 1 [[OXALO-SUCCINATE]][c] '''+''' 1 [[PROTON]][c] '''+''' 1 [[NADPH]][c]
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* [[RXN-2541]]
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* With common name(s):
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== Reaction(s) known to produce the compound ==
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** 1 D-threo-isocitrate[c] '''+''' 1 NADP+[c] '''<=>''' 1 oxalosuccinate[c] '''+''' 1 H+[c] '''+''' 1 NADPH[c]
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* [[HPPD]]
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* [[4-HYDROXYPHENYLPYRUVATE-DIOXYGENASE-RXN]]
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== Genes associated with this reaction  ==
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== Reaction(s) of unknown directionality ==
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Genes have been associated with this reaction based on different elements listed below.
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* Gene: [[Tiso_gene_10809]]
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** Source: [[annotation-in-silico_annotation]]
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*** Assignment: EC-NUMBER
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** Source: [[annotation-experimental_annotation]]
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*** Assignment: EC-NUMBER
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* Gene: [[Tiso_gene_18262]]
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** Source: [[annotation-experimental_annotation]]
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*** Assignment: EC-NUMBER
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** Source: [[orthology-esiliculosus]]
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== Pathways  ==
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== Reconstruction information  ==
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* Category: [[orthology]]
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** Source: [[orthology-esiliculosus]]
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*** Tool: [[pantograph]]
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* Category: [[annotation]]
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** Source: [[annotation-experimental_annotation]]
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*** Tool: [[pathwaytools]]
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** Source: [[annotation-in-silico_annotation]]
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*** Tool: [[pathwaytools]]
 
== External links  ==
 
== External links  ==
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* PUBCHEM:
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* RHEA:
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** [http://pubchem.ncbi.nlm.nih.gov/summary/summary.cgi?cid=5460389 5460389]
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** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=25588 25588]
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* HMDB : HMDB00130
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* LIGAND-RXN:
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* LIGAND-CPD:
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** [http://www.genome.jp/dbget-bin/www_bget?R01899 R01899]
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** [http://www.genome.jp/dbget-bin/www_bget?C00544 C00544]
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{{#set: direction=REVERSIBLE}}
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* CHEMSPIDER:
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{{#set: common name=isocitrate dehydrogenase (NADP+)}}
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** [http://www.chemspider.com/Chemical-Structure.4573931.html 4573931]
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{{#set: common name=ORF}}
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* CHEBI:
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{{#set: common name=oxalosuccinate decarboxylase|oxalsuccinic decarboxylase|isocitrate (NADP) dehydrogenase|isocitrate (nicotinamide adenine dinucleotide phosphate) dehydrogenase|NADP-specific isocitrate dehydrogenase|NADP-linked isocitrate dehydrogenase|NADP isocitric dehydrogenase|isocitrate dehydrogenase (NADP-dependent)|NADP-dependent isocitric dehydrogenase|triphosphopyridine nucleotide-linked isocitrate dehydrogenase-oxalosuccinate carboxylase|NADP+-linked isocitrate dehydrogenase|IDH (ambiguous)|dual-cofactor-specific isocitrate dehydrogenase|NADP+-ICDH|NADP+-IDH|IDP|IDP1|IDP2|IDP3}}
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** [http://www.ebi.ac.uk/chebi/searchId.do?chebiId=16169 16169]
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{{#set: gene associated=Tiso_gene_10809|Tiso_gene_18262}}
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* METABOLIGHTS : MTBLC16169
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{{#set: in pathway=}}
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{{#set: smiles=C1(C(=CC(=C(C=1)O)CC([O-])=O)O)}}
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{{#set: reconstruction category=orthology|annotation}}
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{{#set: inchi key=InChIKey=IGMNYECMUMZDDF-UHFFFAOYSA-M}}
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{{#set: reconstruction source=annotation-experimental_annotation|annotation-in-silico_annotation|orthology-esiliculosus}}
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{{#set: common name=homogentisate}}
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{{#set: reconstruction tool=pantograph|pathwaytools}}
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{{#set: molecular weight=167.141    }}
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{{#set: common name=2,5-dihydroxyphenylacetate}}
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{{#set: consumed by=HGDO|HOMOGENTISATE-12-DIOXYGENASE-RXN|RXN-2541}}
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{{#set: produced by=HPPD|4-HYDROXYPHENYLPYRUVATE-DIOXYGENASE-RXN}}
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Revision as of 16:57, 21 March 2018

Reaction RXN-9951

  • direction:
    • REVERSIBLE
  • common name:
    • isocitrate dehydrogenase (NADP+)
    • ORF
  • Synonym(s):
    • oxalosuccinate decarboxylase
    • oxalsuccinic decarboxylase
    • isocitrate (NADP) dehydrogenase
    • isocitrate (nicotinamide adenine dinucleotide phosphate) dehydrogenase
    • NADP-specific isocitrate dehydrogenase
    • NADP-linked isocitrate dehydrogenase
    • NADP isocitric dehydrogenase
    • isocitrate dehydrogenase (NADP-dependent)
    • NADP-dependent isocitric dehydrogenase
    • triphosphopyridine nucleotide-linked isocitrate dehydrogenase-oxalosuccinate carboxylase
    • NADP+-linked isocitrate dehydrogenase
    • IDH (ambiguous)
    • dual-cofactor-specific isocitrate dehydrogenase
    • NADP+-ICDH
    • NADP+-IDH
    • IDP
    • IDP1
    • IDP2
    • IDP3

Reaction Formula

Genes associated with this reaction

Genes have been associated with this reaction based on different elements listed below.

Pathways

Reconstruction information

External links





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