Difference between revisions of "3-OXOACYL-ACP-SYNTH-BASE-RXN"

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(Created page with "Category:Pathway == Pathway [http://metacyc.org/META/NEW-IMAGE?object=PWY-6260 PWY-6260] == * taxonomic range: ** [http://metacyc.org/META/NEW-IMAGE?object=TAX-7742 TAX-77...")
(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=BADH-RXN BADH-RXN] == * direction: ** REVERSIBLE * ec number: ** [http://enzyme.expasy.org/EC/1.2.1...")
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[[Category:Pathway]]
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[[Category:Reaction]]
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== Pathway [http://metacyc.org/META/NEW-IMAGE?object=PWY-6260 PWY-6260] ==
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== Reaction [http://metacyc.org/META/NEW-IMAGE?object=BADH-RXN BADH-RXN] ==
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* taxonomic range:
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* direction:
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** [http://metacyc.org/META/NEW-IMAGE?object=TAX-7742 TAX-7742]
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** REVERSIBLE
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* common name:
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* ec number:
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** thyroid hormone metabolism I (via deiodination)
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** [http://enzyme.expasy.org/EC/1.2.1.8 EC-1.2.1.8]
 
* Synonym(s):
 
* Synonym(s):
  
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== Reaction(s) found ==
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== Reaction Formula ==
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'''3''' reactions found over '''12''' reactions in the full pathway
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* With identifiers:
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* [[RXN-10604]]
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** 1 [[BETAINE_ALDEHYDE]][c] '''+''' 1 [[WATER]][c] '''+''' 1 [[NAD]][c] '''<=>''' 1 [[NADH]][c] '''+''' 2 [[PROTON]][c] '''+''' 1 [[BETAINE]][c]
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** 1 associated gene(s):
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* With common name(s):
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*** [[Tiso_gene_20481]]
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** 1 betaine aldehyde[c] '''+''' 1 H2O[c] '''+''' 1 NAD+[c] '''<=>''' 1 NADH[c] '''+''' 2 H+[c] '''+''' 1 glycine betaine[c]
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** 1 reconstruction source(s) associated:
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*** [[annotation-in-silico_annotation]]
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== Genes associated with this reaction  ==
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* [[RXN-12037]]
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Genes have been associated with this reaction based on different elements listed below.
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** 1 associated gene(s):
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* Gene: [[Tiso_gene_3513]]
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*** [[Tiso_gene_20481]]
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** Source: [[orthology-esiliculosus]]
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** 1 reconstruction source(s) associated:
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== Pathways  ==
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*** [[annotation-in-silico_annotation]]
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* [[CHOLINE-BETAINE-ANA-PWY]], choline degradation I: [http://metacyc.org/META/NEW-IMAGE?object=CHOLINE-BETAINE-ANA-PWY CHOLINE-BETAINE-ANA-PWY]
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* [[THYROXINE-DEIODINASE-RXN]]
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** '''2''' reactions found over '''2''' reactions in the full pathway
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** 1 associated gene(s):
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* [[PWY1F-353]], glycine betaine biosynthesis III (plants): [http://metacyc.org/META/NEW-IMAGE?object=PWY1F-353 PWY1F-353]
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*** [[Tiso_gene_20481]]
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** '''2''' reactions found over '''3''' reactions in the full pathway
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** 1 reconstruction source(s) associated:
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* [[PWY-7494]], choline degradation IV: [http://metacyc.org/META/NEW-IMAGE?object=PWY-7494 PWY-7494]
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*** [[annotation-in-silico_annotation]]
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** '''2''' reactions found over '''4''' reactions in the full pathway
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== Reaction(s) not found ==
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* [[BETSYN-PWY]], glycine betaine biosynthesis I (Gram-negative bacteria): [http://metacyc.org/META/NEW-IMAGE?object=BETSYN-PWY BETSYN-PWY]
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* [http://metacyc.org/META/NEW-IMAGE?object=1.97.1.11-RXN 1.97.1.11-RXN]
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** '''2''' reactions found over '''2''' reactions in the full pathway
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* [http://metacyc.org/META/NEW-IMAGE?object=RXN-10605 RXN-10605]
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* [[PWY-3722]], glycine betaine biosynthesis II (Gram-positive bacteria): [http://metacyc.org/META/NEW-IMAGE?object=PWY-3722 PWY-3722]
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* [http://metacyc.org/META/NEW-IMAGE?object=RXN-12030 RXN-12030]
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** '''1''' reactions found over '''2''' reactions in the full pathway
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* [http://metacyc.org/META/NEW-IMAGE?object=RXN-12031 RXN-12031]
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== Reconstruction information  ==
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* [http://metacyc.org/META/NEW-IMAGE?object=RXN-12032 RXN-12032]
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* Category: [[orthology]]
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* [http://metacyc.org/META/NEW-IMAGE?object=RXN-12033 RXN-12033]
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** Source: [[orthology-esiliculosus]]
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* [http://metacyc.org/META/NEW-IMAGE?object=RXN-12034 RXN-12034]
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*** Tool: [[pantograph]]
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* [http://metacyc.org/META/NEW-IMAGE?object=RXN-12035 RXN-12035]
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* [http://metacyc.org/META/NEW-IMAGE?object=RXN-12036 RXN-12036]
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== External links  ==
 
== External links  ==
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{{#set: taxonomic range=TAX-7742}}
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* RHEA:
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{{#set: common name=thyroid hormone metabolism I (via deiodination)}}
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** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=30070 30070]
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{{#set: reaction found=3}}
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** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=15305 15305]
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{{#set: total reaction=12}}
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* LIGAND-RXN:
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{{#set: completion rate=25.0}}
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** [http://www.genome.jp/dbget-bin/www_bget?R02565 R02565]
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* UNIPROT:
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** [http://www.uniprot.org/uniprot/P17202 P17202]
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** [http://www.uniprot.org/uniprot/P17445 P17445]
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** [http://www.uniprot.org/uniprot/P28237 P28237]
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** [http://www.uniprot.org/uniprot/P42757 P42757]
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** [http://www.uniprot.org/uniprot/Q40024 Q40024]
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** [http://www.uniprot.org/uniprot/O24174 O24174]
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** [http://www.uniprot.org/uniprot/Q43828 Q43828]
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** [http://www.uniprot.org/uniprot/Q43829 Q43829]
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** [http://www.uniprot.org/uniprot/O22477 O22477]
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{{#set: direction=REVERSIBLE}}
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{{#set: ec number=EC-1.2.1.8}}
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{{#set: gene associated=Tiso_gene_3513}}
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{{#set: in pathway=CHOLINE-BETAINE-ANA-PWY|PWY1F-353|PWY-7494|BETSYN-PWY|PWY-3722}}
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{{#set: reconstruction category=orthology}}
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{{#set: reconstruction source=orthology-esiliculosus}}
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{{#set: reconstruction tool=pantograph}}

Revision as of 16:00, 21 March 2018

Reaction BADH-RXN

  • direction:
    • REVERSIBLE
  • ec number:
  • Synonym(s):

Reaction Formula

  • With identifiers:
  • With common name(s):
    • 1 betaine aldehyde[c] + 1 H2O[c] + 1 NAD+[c] <=> 1 NADH[c] + 2 H+[c] + 1 glycine betaine[c]

Genes associated with this reaction

Genes have been associated with this reaction based on different elements listed below.

Pathways

  • CHOLINE-BETAINE-ANA-PWY, choline degradation I: CHOLINE-BETAINE-ANA-PWY
    • 2 reactions found over 2 reactions in the full pathway
  • PWY1F-353, glycine betaine biosynthesis III (plants): PWY1F-353
    • 2 reactions found over 3 reactions in the full pathway
  • PWY-7494, choline degradation IV: PWY-7494
    • 2 reactions found over 4 reactions in the full pathway
  • BETSYN-PWY, glycine betaine biosynthesis I (Gram-negative bacteria): BETSYN-PWY
    • 2 reactions found over 2 reactions in the full pathway
  • PWY-3722, glycine betaine biosynthesis II (Gram-positive bacteria): PWY-3722
    • 1 reactions found over 2 reactions in the full pathway

Reconstruction information

External links




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