Difference between revisions of "3-OXOACYL-ACP-SYNTH-BASE-RXN"

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(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=BADH-RXN BADH-RXN] == * direction: ** REVERSIBLE * ec number: ** [http://enzyme.expasy.org/EC/1.2.1...")
(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=3-OXOACYL-ACP-SYNTH-BASE-RXN 3-OXOACYL-ACP-SYNTH-BASE-RXN] == * direction: ** LEFT-TO-RIGHT * commo...")
 
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[[Category:Reaction]]
 
[[Category:Reaction]]
−
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=BADH-RXN BADH-RXN] ==
+
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=3-OXOACYL-ACP-SYNTH-BASE-RXN 3-OXOACYL-ACP-SYNTH-BASE-RXN] ==
 
* direction:
 
* direction:
−
** REVERSIBLE
+
** LEFT-TO-RIGHT
 +
* common name:
 +
** 3-oxoacyl-synthase
 +
** polyketide_synthase
 
* ec number:
 
* ec number:
−
** [http://enzyme.expasy.org/EC/1.2.1.8 EC-1.2.1.8]
+
** [http://enzyme.expasy.org/EC/2.3.1.86 EC-2.3.1.86]
 +
** [http://enzyme.expasy.org/EC/2.3.1.85 EC-2.3.1.85]
 +
** [http://enzyme.expasy.org/EC/2.3.1.41 EC-2.3.1.41]
 
* Synonym(s):
 
* Synonym(s):
  
 
== Reaction Formula ==
 
== Reaction Formula ==
 
* With identifiers:
 
* With identifiers:
−
** 1 [[BETAINE_ALDEHYDE]][c] '''+''' 1 [[WATER]][c] '''+''' 1 [[NAD]][c] '''<=>''' 1 [[NADH]][c] '''+''' 2 [[PROTON]][c] '''+''' 1 [[BETAINE]][c]
+
** 1 [[PROTON]][c] '''+''' 1 [[MALONYL-ACP]][c] '''+''' 1 [[ACETYL-ACP]][c] '''=>''' 1 [[ACP]][c] '''+''' 1 [[Acetoacetyl-ACPs]][c] '''+''' 1 [[CARBON-DIOXIDE]][c]
 
* With common name(s):
 
* With common name(s):
−
** 1 betaine aldehyde[c] '''+''' 1 H2O[c] '''+''' 1 NAD+[c] '''<=>''' 1 NADH[c] '''+''' 2 H+[c] '''+''' 1 glycine betaine[c]
+
** 1 H+[c] '''+''' 1 a malonyl-[acp][c] '''+''' 1 an acetyl-[acp][c] '''=>''' 1 a holo-[acyl-carrier protein][c] '''+''' 1 an acetoacetyl-[acp][c] '''+''' 1 CO2[c]
  
 
== Genes associated with this reaction  ==
 
== Genes associated with this reaction  ==
 
Genes have been associated with this reaction based on different elements listed below.
 
Genes have been associated with this reaction based on different elements listed below.
−
* Gene: [[Tiso_gene_3513]]
+
* Gene: [[Tiso_gene_5939]]
 +
** Source: [[annotation-in-silico_annotation]]
 +
*** Assignment: EC-NUMBER
 +
** Source: [[annotation-experimental_annotation]]
 +
*** Assignment: EC-NUMBER
 +
* Gene: [[Tiso_gene_500]]
 +
** Source: [[annotation-in-silico_annotation]]
 +
*** Assignment: EC-NUMBER
 +
* Gene: [[Tiso_gene_14485]]
 +
** Source: [[orthology-synechocystis]]
 
** Source: [[orthology-esiliculosus]]
 
** Source: [[orthology-esiliculosus]]
 +
* Gene: [[Tiso_gene_13394]]
 +
** Source: [[annotation-in-silico_annotation]]
 +
*** Assignment: EC-NUMBER
 +
* Gene: [[Tiso_gene_136]]
 +
** Source: [[annotation-in-silico_annotation]]
 +
*** Assignment: EC-NUMBER
 +
* Gene: [[Tiso_gene_15991]]
 +
** Source: [[orthology-athaliana]]
 +
** Source: [[orthology-athaliana]]
 +
** Source: [[orthology-synechocystis]]
 +
** Source: [[orthology-esiliculosus]]
 +
* Gene: [[Tiso_gene_135]]
 +
** Source: [[annotation-in-silico_annotation]]
 +
*** Assignment: EC-NUMBER
 +
* Gene: [[Tiso_gene_19302]]
 +
** Source: [[orthology-synechocystis]]
 +
** Source: [[orthology-esiliculosus]]
 +
* Gene: [[Tiso_gene_10876]]
 +
** Source: [[annotation-in-silico_annotation]]
 +
*** Assignment: EC-NUMBER
 
== Pathways  ==
 
== Pathways  ==
−
* [[CHOLINE-BETAINE-ANA-PWY]], choline degradation I: [http://metacyc.org/META/NEW-IMAGE?object=CHOLINE-BETAINE-ANA-PWY CHOLINE-BETAINE-ANA-PWY]
+
* [[PWY-5965]], fatty acid biosynthesis initiation III: [http://metacyc.org/META/NEW-IMAGE?object=PWY-5965 PWY-5965]
−
** '''2''' reactions found over '''2''' reactions in the full pathway
+
−
* [[PWY1F-353]], glycine betaine biosynthesis III (plants): [http://metacyc.org/META/NEW-IMAGE?object=PWY1F-353 PWY1F-353]
+
−
** '''2''' reactions found over '''3''' reactions in the full pathway
+
−
* [[PWY-7494]], choline degradation IV: [http://metacyc.org/META/NEW-IMAGE?object=PWY-7494 PWY-7494]
+
−
** '''2''' reactions found over '''4''' reactions in the full pathway
+
−
* [[BETSYN-PWY]], glycine betaine biosynthesis I (Gram-negative bacteria): [http://metacyc.org/META/NEW-IMAGE?object=BETSYN-PWY BETSYN-PWY]
+
−
** '''2''' reactions found over '''2''' reactions in the full pathway
+
−
* [[PWY-3722]], glycine betaine biosynthesis II (Gram-positive bacteria): [http://metacyc.org/META/NEW-IMAGE?object=PWY-3722 PWY-3722]
+
 
** '''1''' reactions found over '''2''' reactions in the full pathway
 
** '''1''' reactions found over '''2''' reactions in the full pathway
 +
* [[PWY-5966]], fatty acid biosynthesis initiation II: [http://metacyc.org/META/NEW-IMAGE?object=PWY-5966 PWY-5966]
 +
** '''2''' reactions found over '''2''' reactions in the full pathway
 +
* [[FASYN-INITIAL-PWY]], superpathway of fatty acid biosynthesis initiation (E. coli): [http://metacyc.org/META/NEW-IMAGE?object=FASYN-INITIAL-PWY FASYN-INITIAL-PWY]
 +
** '''5''' reactions found over '''8''' reactions in the full pathway
 +
* [[PWY-7388]], octanoyl-[acyl-carrier protein] biosynthesis (mitochondria, yeast): [http://metacyc.org/META/NEW-IMAGE?object=PWY-7388 PWY-7388]
 +
** '''9''' reactions found over '''9''' reactions in the full pathway
 
== Reconstruction information  ==
 
== Reconstruction information  ==
 
* Category: [[orthology]]
 
* Category: [[orthology]]
 +
** Source: [[orthology-athaliana]]
 +
*** Tool: [[pantograph]]
 +
** Source: [[orthology-synechocystis]]
 +
*** Tool: [[pantograph]]
 
** Source: [[orthology-esiliculosus]]
 
** Source: [[orthology-esiliculosus]]
 
*** Tool: [[pantograph]]
 
*** Tool: [[pantograph]]
 +
* Category: [[manual]]
 +
** Source: [[manual-primary_network]]
 +
* Category: [[annotation]]
 +
** Source: [[annotation-experimental_annotation]]
 +
*** Tool: [[pathwaytools]]
 +
** Source: [[annotation-in-silico_annotation]]
 +
*** Tool: [[pathwaytools]]
 
== External links  ==
 
== External links  ==
−
* RHEA:
 
−
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=30070 30070]
 
−
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=15305 15305]
 
−
* LIGAND-RXN:
 
−
** [http://www.genome.jp/dbget-bin/www_bget?R02565 R02565]
 
 
* UNIPROT:
 
* UNIPROT:
−
** [http://www.uniprot.org/uniprot/P17202 P17202]
+
** [http://www.uniprot.org/uniprot/P23902 P23902]
−
** [http://www.uniprot.org/uniprot/P17445 P17445]
+
** [http://www.uniprot.org/uniprot/P0A6R0 P0A6R0]
−
** [http://www.uniprot.org/uniprot/P28237 P28237]
+
** [http://www.uniprot.org/uniprot/P49327 P49327]
−
** [http://www.uniprot.org/uniprot/P42757 P42757]
+
** [http://www.uniprot.org/uniprot/P43710 P43710]
−
** [http://www.uniprot.org/uniprot/Q40024 Q40024]
+
** [http://www.uniprot.org/uniprot/Q9HYR2 Q9HYR2]
−
** [http://www.uniprot.org/uniprot/O24174 O24174]
+
** [http://www.uniprot.org/uniprot/O67612 O67612]
−
** [http://www.uniprot.org/uniprot/Q43828 Q43828]
+
** [http://www.uniprot.org/uniprot/P20582 P20582]
−
** [http://www.uniprot.org/uniprot/Q43829 Q43829]
+
** [http://www.uniprot.org/uniprot/Q9JT63 Q9JT63]
−
** [http://www.uniprot.org/uniprot/O22477 O22477]
+
** [http://www.uniprot.org/uniprot/Q9JW56 Q9JW56]
−
{{#set: direction=REVERSIBLE}}
+
** [http://www.uniprot.org/uniprot/Q9PMZ6 Q9PMZ6]
−
{{#set: ec number=EC-1.2.1.8}}
+
** [http://www.uniprot.org/uniprot/P43711 P43711]
−
{{#set: gene associated=Tiso_gene_3513}}
+
** [http://www.uniprot.org/uniprot/O25284 O25284]
−
{{#set: in pathway=CHOLINE-BETAINE-ANA-PWY|PWY1F-353|PWY-7494|BETSYN-PWY|PWY-3722}}
+
** [http://www.uniprot.org/uniprot/Q9JX65 Q9JX65]
−
{{#set: reconstruction category=orthology}}
+
** [http://www.uniprot.org/uniprot/O34340 O34340]
−
{{#set: reconstruction source=orthology-esiliculosus}}
+
** [http://www.uniprot.org/uniprot/Q9PI63 Q9PI63]
−
{{#set: reconstruction tool=pantograph}}
+
** [http://www.uniprot.org/uniprot/P0AAI5 P0AAI5]
 +
** [http://www.uniprot.org/uniprot/Q07510 Q07510]
 +
** [http://www.uniprot.org/uniprot/Q06097 Q06097]
 +
** [http://www.uniprot.org/uniprot/P41175 P41175]
 +
** [http://www.uniprot.org/uniprot/P31176 P31176]
 +
** [http://www.uniprot.org/uniprot/Q40027 Q40027]
 +
** [http://www.uniprot.org/uniprot/Q40028 Q40028]
 +
** [http://www.uniprot.org/uniprot/P73283 P73283]
 +
** [http://www.uniprot.org/uniprot/P0A953 P0A953]
 +
** [http://www.uniprot.org/uniprot/O64485 O64485]
 +
** [http://www.uniprot.org/uniprot/O65677 O65677]
 +
** [http://www.uniprot.org/uniprot/Q39310 Q39310]
 +
** [http://www.uniprot.org/uniprot/O23738 O23738]
 +
** [http://www.uniprot.org/uniprot/Q41134 Q41134]
 +
** [http://www.uniprot.org/uniprot/Q41135 Q41135]
 +
** [http://www.uniprot.org/uniprot/Q54208 Q54208]
 +
** [http://www.uniprot.org/uniprot/O54440 O54440]
 +
** [http://www.uniprot.org/uniprot/P55338 P55338]
 +
** [http://www.uniprot.org/uniprot/Q9RA31 Q9RA31]
 +
** [http://www.uniprot.org/uniprot/P12276 P12276]
 +
** [http://www.uniprot.org/uniprot/P12785 P12785]
 +
{{#set: direction=LEFT-TO-RIGHT}}
 +
{{#set: common name=3-oxoacyl-synthase}}
 +
{{#set: common name=polyketide_synthase}}
 +
{{#set: ec number=EC-2.3.1.86}}
 +
{{#set: ec number=EC-2.3.1.85}}
 +
{{#set: ec number=EC-2.3.1.41}}
 +
{{#set: gene associated=Tiso_gene_5939|Tiso_gene_500|Tiso_gene_14485|Tiso_gene_13394|Tiso_gene_136|Tiso_gene_15991|Tiso_gene_135|Tiso_gene_19302|Tiso_gene_10876}}
 +
{{#set: in pathway=PWY-5965|PWY-5966|FASYN-INITIAL-PWY|PWY-7388}}
 +
{{#set: reconstruction category=orthology|manual|annotation}}
 +
{{#set: reconstruction source=annotation-experimental_annotation|orthology-esiliculosus|annotation-in-silico_annotation|orthology-athaliana|orthology-synechocystis|manual-primary_network}}
 +
{{#set: reconstruction tool=pantograph|pathwaytools}}

Latest revision as of 20:23, 21 March 2018

Reaction 3-OXOACYL-ACP-SYNTH-BASE-RXN

Reaction Formula

Genes associated with this reaction

Genes have been associated with this reaction based on different elements listed below.

Pathways

  • PWY-5965, fatty acid biosynthesis initiation III: PWY-5965
    • 1 reactions found over 2 reactions in the full pathway
  • PWY-5966, fatty acid biosynthesis initiation II: PWY-5966
    • 2 reactions found over 2 reactions in the full pathway
  • FASYN-INITIAL-PWY, superpathway of fatty acid biosynthesis initiation (E. coli): FASYN-INITIAL-PWY
    • 5 reactions found over 8 reactions in the full pathway
  • PWY-7388, octanoyl-[acyl-carrier protein] biosynthesis (mitochondria, yeast): PWY-7388
    • 9 reactions found over 9 reactions in the full pathway

Reconstruction information

External links






Retrieved from "http://gem-aureme.irisa.fr/tisogem/index.php?title=3-OXOACYL-ACP-SYNTH-BASE-RXN&oldid=41313"