Difference between revisions of "3.1.2.21-RXN"

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(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-16139 RXN-16139] == * direction: ** LEFT-TO-RIGHT * common name: ** ORF ** abhydrolase_domain-c...")
(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=3.1.2.21-RXN 3.1.2.21-RXN] == * direction: ** LEFT-TO-RIGHT * ec number: ** [http://enzyme.expasy.o...")
 
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[[Category:Reaction]]
 
[[Category:Reaction]]
−
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-16139 RXN-16139] ==
+
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=3.1.2.21-RXN 3.1.2.21-RXN] ==
 
* direction:
 
* direction:
 
** LEFT-TO-RIGHT
 
** LEFT-TO-RIGHT
−
* common name:
 
−
** ORF
 
−
** abhydrolase_domain-containing_protein_4-like
 
 
* ec number:
 
* ec number:
−
** [http://enzyme.expasy.org/EC/3.1.1.4 EC-3.1.1.4]
+
** [http://enzyme.expasy.org/EC/3.1.2.21 EC-3.1.2.21]
 
* Synonym(s):
 
* Synonym(s):
  
 
== Reaction Formula ==
 
== Reaction Formula ==
 
* With identifiers:
 
* With identifiers:
−
** 1 [[WATER]][c] '''+''' 1 [[CPD-17282]][c] '''=>''' 1 [[5Z8Z11Z14Z17Z-EICOSAPENTAENOATE]][c] '''+''' 1 [[PROTON]][c] '''+''' 1 [[Glycerolipids]][c]
+
** 1 [[Dodecanoyl-ACPs]][c] '''+''' 1 [[WATER]][c] '''=>''' 1 [[PROTON]][c] '''+''' 1 [[ACP]][c] '''+''' 1 [[DODECANOATE]][c]
 
* With common name(s):
 
* With common name(s):
−
** 1 H2O[c] '''+''' 1 a [glycerolipid]-icosapentaenoate[c] '''=>''' 1 icosapentaenoate[c] '''+''' 1 H+[c] '''+''' 1 a glycerolipid[c]
+
** 1 a dodecanoyl-[acp][c] '''+''' 1 H2O[c] '''=>''' 1 H+[c] '''+''' 1 a holo-[acyl-carrier protein][c] '''+''' 1 laurate[c]
  
 
== Genes associated with this reaction  ==
 
== Genes associated with this reaction  ==
−
Genes have been associated with this reaction based on different elements listed below.
 
−
* [[Tiso_gene_12960]]
 
−
** IN-SILICO_ANNOTATION
 
−
***EC-NUMBER
 
−
* [[Tiso_gene_15047]]
 
−
** IN-SILICO_ANNOTATION
 
−
***EC-NUMBER
 
−
* [[Tiso_gene_15046]]
 
−
** IN-SILICO_ANNOTATION
 
−
***EC-NUMBER
 
−
* [[Tiso_gene_12959]]
 
−
** IN-SILICO_ANNOTATION
 
−
***EC-NUMBER
 
 
== Pathways  ==
 
== Pathways  ==
−
* [[PWY66-394]], aspirin triggered resolvin E biosynthesis: [http://metacyc.org/META/NEW-IMAGE?object=PWY66-394 PWY66-394]
+
* [[PWY-5971]], palmitate biosynthesis II (bacteria and plants): [http://metacyc.org/META/NEW-IMAGE?object=PWY-5971 PWY-5971]
−
** '''1''' reactions found over '''5''' reactions in the full pathway
+
** '''31''' reactions found over '''31''' reactions in the full pathway
 +
* [[PWY-5994]], palmitate biosynthesis I (animals and fungi): [http://metacyc.org/META/NEW-IMAGE?object=PWY-5994 PWY-5994]
 +
** '''31''' reactions found over '''31''' reactions in the full pathway
 
== Reconstruction information  ==
 
== Reconstruction information  ==
−
* Category: [[annotation]]
+
* Category: [[gap-filling]]
−
** Source: [[annotation-in-silico_annotation]]
+
** Source: [[gap-filling-gapfilling_solution_with_meneco_draft_medium]]
−
*** Tool: [[pathwaytools]]
+
*** Tool: [[meneco]]
 +
**** Comment: [[added for gapfilling]]
 
== External links  ==
 
== External links  ==
 +
* LIGAND-RXN:
 +
** [http://www.genome.jp/dbget-bin/www_bget?R04014 R04014]
 
{{#set: direction=LEFT-TO-RIGHT}}
 
{{#set: direction=LEFT-TO-RIGHT}}
−
{{#set: common name=ORF}}
+
{{#set: ec number=EC-3.1.2.21}}
−
{{#set: common name=abhydrolase_domain-containing_protein_4-like}}
+
{{#set: in pathway=PWY-5971|PWY-5994}}
−
{{#set: ec number=EC-3.1.1.4}}
+
{{#set: reconstruction category=gap-filling}}
−
{{#set: gene associated=Tiso_gene_12960|Tiso_gene_15047|Tiso_gene_15046|Tiso_gene_12959}}
+
{{#set: reconstruction source=gap-filling-gapfilling_solution_with_meneco_draft_medium}}
−
{{#set: in pathway=PWY66-394}}
+
{{#set: reconstruction tool=meneco}}
−
{{#set: reconstruction category=annotation}}
+
{{#set: reconstruction comment=added for gapfilling}}
−
{{#set: reconstruction source=annotation-in-silico_annotation}}
+
−
{{#set: reconstruction tool=pathwaytools}}
+

Latest revision as of 20:51, 21 March 2018

Reaction 3.1.2.21-RXN

  • direction:
    • LEFT-TO-RIGHT
  • ec number:
  • Synonym(s):

Reaction Formula

  • With identifiers:
  • With common name(s):
    • 1 a dodecanoyl-[acp][c] + 1 H2O[c] => 1 H+[c] + 1 a holo-[acyl-carrier protein][c] + 1 laurate[c]

Genes associated with this reaction

Pathways

  • PWY-5971, palmitate biosynthesis II (bacteria and plants): PWY-5971
    • 31 reactions found over 31 reactions in the full pathway
  • PWY-5994, palmitate biosynthesis I (animals and fungi): PWY-5994
    • 31 reactions found over 31 reactions in the full pathway

Reconstruction information

External links




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