Difference between revisions of "3.1.2.21-RXN"

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(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-15635 RXN-15635] == * direction: ** LEFT-TO-RIGHT * common name: ** ketopantoate_hydroxymethylt...")
 
(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=3.1.2.21-RXN 3.1.2.21-RXN] == * direction: ** LEFT-TO-RIGHT * ec number: ** [http://enzyme.expasy.o...")
 
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[[Category:Reaction]]
 
[[Category:Reaction]]
−
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-15635 RXN-15635] ==
+
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=3.1.2.21-RXN 3.1.2.21-RXN] ==
 
* direction:
 
* direction:
 
** LEFT-TO-RIGHT
 
** LEFT-TO-RIGHT
−
* common name:
 
−
** ketopantoate_hydroxymethyltransferase
 
 
* ec number:
 
* ec number:
−
** [http://enzyme.expasy.org/EC/2.1.2.11 EC-2.1.2.11]
+
** [http://enzyme.expasy.org/EC/3.1.2.21 EC-3.1.2.21]
 
* Synonym(s):
 
* Synonym(s):
  
 
== Reaction Formula ==
 
== Reaction Formula ==
 
* With identifiers:
 
* With identifiers:
−
** 1 [[2-KETO-ISOVALERATE]][c] '''+''' 1 [[WATER]][c] '''+''' 1 [[METHYLENETETRAHYDROMETHANOPTERIN]][c] '''=>''' 1 [[2-DEHYDROPANTOATE]][c] '''+''' 1 [[THMPT]][c]
+
** 1 [[Dodecanoyl-ACPs]][c] '''+''' 1 [[WATER]][c] '''=>''' 1 [[PROTON]][c] '''+''' 1 [[ACP]][c] '''+''' 1 [[DODECANOATE]][c]
 
* With common name(s):
 
* With common name(s):
−
** 1 3-methyl-2-oxobutanoate[c] '''+''' 1 H2O[c] '''+''' 1 5,10-methylene-tetrahydromethanopterin[c] '''=>''' 1 2-dehydropantoate[c] '''+''' 1 tetrahydromethanopterin[c]
+
** 1 a dodecanoyl-[acp][c] '''+''' 1 H2O[c] '''=>''' 1 H+[c] '''+''' 1 a holo-[acyl-carrier protein][c] '''+''' 1 laurate[c]
  
 
== Genes associated with this reaction  ==
 
== Genes associated with this reaction  ==
−
Genes have been associated with this reaction based on different elements listed below.
 
−
* [[Tiso_gene_14465]]
 
−
** IN-SILICO_ANNOTATION
 
−
***EC-NUMBER
 
−
** [[pantograph]]-[[esiliculosus]]
 
−
* [[Tiso_gene_14466]]
 
−
** IN-SILICO_ANNOTATION
 
−
***AUTOMATED-NAME-MATCH
 
 
== Pathways  ==
 
== Pathways  ==
−
* [[PWY-6654]], phosphopantothenate biosynthesis III: [http://metacyc.org/META/NEW-IMAGE?object=PWY-6654 PWY-6654]
+
* [[PWY-5971]], palmitate biosynthesis II (bacteria and plants): [http://metacyc.org/META/NEW-IMAGE?object=PWY-5971 PWY-5971]
−
** '''2''' reactions found over '''4''' reactions in the full pathway
+
** '''31''' reactions found over '''31''' reactions in the full pathway
 +
* [[PWY-5994]], palmitate biosynthesis I (animals and fungi): [http://metacyc.org/META/NEW-IMAGE?object=PWY-5994 PWY-5994]
 +
** '''31''' reactions found over '''31''' reactions in the full pathway
 
== Reconstruction information  ==
 
== Reconstruction information  ==
−
* [[orthology]]:
+
* Category: [[gap-filling]]
−
** [[pantograph]]:
+
** Source: [[gap-filling-gapfilling_solution_with_meneco_draft_medium]]
−
*** [[esiliculosus]]
+
*** Tool: [[meneco]]
−
* [[annotation]]:
+
**** Comment: [[added for gapfilling]]
−
** [[pathwaytools]]:
+
−
*** [[in-silico_annotation]]
+
 
== External links  ==
 
== External links  ==
 +
* LIGAND-RXN:
 +
** [http://www.genome.jp/dbget-bin/www_bget?R04014 R04014]
 
{{#set: direction=LEFT-TO-RIGHT}}
 
{{#set: direction=LEFT-TO-RIGHT}}
−
{{#set: common name=ketopantoate_hydroxymethyltransferase}}
+
{{#set: ec number=EC-3.1.2.21}}
−
{{#set: ec number=EC-2.1.2.11}}
+
{{#set: in pathway=PWY-5971|PWY-5994}}
−
{{#set: gene associated=Tiso_gene_14465|Tiso_gene_14466}}
+
{{#set: reconstruction category=gap-filling}}
−
{{#set: in pathway=PWY-6654}}
+
{{#set: reconstruction source=gap-filling-gapfilling_solution_with_meneco_draft_medium}}
−
{{#set: reconstruction category=orthology}}
+
{{#set: reconstruction tool=meneco}}
−
{{#set: reconstruction tool=pantograph}}
+
{{#set: reconstruction comment=added for gapfilling}}
−
{{#set: reconstruction source=esiliculosus}}
+
−
{{#set: reconstruction category=annotation}}
+
−
{{#set: reconstruction tool=pathwaytools}}
+
−
{{#set: reconstruction source=in-silico_annotation}}
+

Latest revision as of 20:51, 21 March 2018

Reaction 3.1.2.21-RXN

  • direction:
    • LEFT-TO-RIGHT
  • ec number:
  • Synonym(s):

Reaction Formula

  • With identifiers:
  • With common name(s):
    • 1 a dodecanoyl-[acp][c] + 1 H2O[c] => 1 H+[c] + 1 a holo-[acyl-carrier protein][c] + 1 laurate[c]

Genes associated with this reaction

Pathways

  • PWY-5971, palmitate biosynthesis II (bacteria and plants): PWY-5971
    • 31 reactions found over 31 reactions in the full pathway
  • PWY-5994, palmitate biosynthesis I (animals and fungi): PWY-5994
    • 31 reactions found over 31 reactions in the full pathway

Reconstruction information

External links




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