Difference between revisions of "3.1.26.5-RXN"

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(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=GLURS-RXN GLURS-RXN] == * direction: ** LEFT-TO-RIGHT * common name: ** ORF ** glutamyl-trna_synthe...")
(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=DCDPKIN-RXN DCDPKIN-RXN] == * direction: ** LEFT-TO-RIGHT * common name: ** ORF ** nucleoside_dipho...")
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[[Category:Reaction]]
 
[[Category:Reaction]]
−
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=GLURS-RXN GLURS-RXN] ==
+
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=DCDPKIN-RXN DCDPKIN-RXN] ==
 
* direction:
 
* direction:
 
** LEFT-TO-RIGHT
 
** LEFT-TO-RIGHT
 
* common name:
 
* common name:
 
** ORF
 
** ORF
−
** glutamyl-trna_synthetase
+
** nucleoside_diphosphate_kinase
 +
** adenylate_kinase_domain-containing_protein_1
 
* ec number:
 
* ec number:
−
** [http://enzyme.expasy.org/EC/6.1.1.17 EC-6.1.1.17]
+
** [http://enzyme.expasy.org/EC/2.7.4.6 EC-2.7.4.6]
 
* Synonym(s):
 
* Synonym(s):
  
 
== Reaction Formula ==
 
== Reaction Formula ==
 
* With identifiers:
 
* With identifiers:
−
** 1 [[GLT]][c] '''+''' 1 [[ATP]][c] '''+''' 1 [[GLT-tRNAs]][c] '''=>''' 1 [[AMP]][c] '''+''' 1 [[Charged-GLT-tRNAs]][c] '''+''' 1 [[PPI]][c]
+
** 1 [[ATP]][c] '''+''' 1 [[DCDP]][c] '''=>''' 1 [[ADP]][c] '''+''' 1 [[DCTP]][c]
 
* With common name(s):
 
* With common name(s):
−
** 1 L-glutamate[c] '''+''' 1 ATP[c] '''+''' 1 a tRNAglu[c] '''=>''' 1 AMP[c] '''+''' 1 an L-glutamyl-[tRNAGlu][c] '''+''' 1 diphosphate[c]
+
** 1 ATP[c] '''+''' 1 dCDP[c] '''=>''' 1 ADP[c] '''+''' 1 dCTP[c]
  
 
== Genes associated with this reaction  ==
 
== Genes associated with this reaction  ==
 
Genes have been associated with this reaction based on different elements listed below.
 
Genes have been associated with this reaction based on different elements listed below.
−
* [[Tiso_gene_5046]]
+
* [[Tiso_gene_9290]]
 
** IN-SILICO_ANNOTATION
 
** IN-SILICO_ANNOTATION
 
***EC-NUMBER
 
***EC-NUMBER
−
** EXPERIMENTAL_ANNOTATION
+
* [[Tiso_gene_18224]]
 +
** IN-SILICO_ANNOTATION
 
***EC-NUMBER
 
***EC-NUMBER
−
* [[Tiso_gene_5379]]
+
* [[Tiso_gene_17272]]
 +
** IN-SILICO_ANNOTATION
 +
***EC-NUMBER
 +
* [[Tiso_gene_16529]]
 
** IN-SILICO_ANNOTATION
 
** IN-SILICO_ANNOTATION
 
***EC-NUMBER
 
***EC-NUMBER
 
** EXPERIMENTAL_ANNOTATION
 
** EXPERIMENTAL_ANNOTATION
 
***EC-NUMBER
 
***EC-NUMBER
 +
** [[pantograph]]-[[athaliana]]
 +
** [[pantograph]]-[[synechocystis]]
 
** [[pantograph]]-[[esiliculosus]]
 
** [[pantograph]]-[[esiliculosus]]
 +
* [[Tiso_gene_17271]]
 +
** IN-SILICO_ANNOTATION
 +
***EC-NUMBER
 +
* [[Tiso_gene_195]]
 +
** IN-SILICO_ANNOTATION
 +
***EC-NUMBER
 
== Pathways  ==
 
== Pathways  ==
−
* [[TRNA-CHARGING-PWY]], tRNA charging: [http://metacyc.org/META/NEW-IMAGE?object=TRNA-CHARGING-PWY TRNA-CHARGING-PWY]
+
* [[PWY-7210]], pyrimidine deoxyribonucleotides biosynthesis from CTP: [http://metacyc.org/META/NEW-IMAGE?object=PWY-7210 PWY-7210]
−
** '''21''' reactions found over '''21''' reactions in the full pathway
+
** '''8''' reactions found over '''8''' reactions in the full pathway
−
* [[PWY-5188]], tetrapyrrole biosynthesis I (from glutamate): [http://metacyc.org/META/NEW-IMAGE?object=PWY-5188 PWY-5188]
+
* [[PWY-7198]], pyrimidine deoxyribonucleotides de novo biosynthesis IV: [http://metacyc.org/META/NEW-IMAGE?object=PWY-7198 PWY-7198]
−
** '''6''' reactions found over '''6''' reactions in the full pathway
+
** '''6''' reactions found over '''7''' reactions in the full pathway
 +
* [[PWY-7184]], pyrimidine deoxyribonucleotides de novo biosynthesis I: [http://metacyc.org/META/NEW-IMAGE?object=PWY-7184 PWY-7184]
 +
** '''9''' reactions found over '''9''' reactions in the full pathway
 +
* [[PWY-7197]], pyrimidine deoxyribonucleotide phosphorylation: [http://metacyc.org/META/NEW-IMAGE?object=PWY-7197 PWY-7197]
 +
** '''4''' reactions found over '''4''' reactions in the full pathway
 +
* [[PWY0-166]], superpathway of pyrimidine deoxyribonucleotides de novo biosynthesis (E. coli): [http://metacyc.org/META/NEW-IMAGE?object=PWY0-166 PWY0-166]
 +
** '''12''' reactions found over '''17''' reactions in the full pathway
 +
* [[PWY-6545]], pyrimidine deoxyribonucleotides de novo biosynthesis III: [http://metacyc.org/META/NEW-IMAGE?object=PWY-6545 PWY-6545]
 +
** '''8''' reactions found over '''9''' reactions in the full pathway
 
== Reconstruction information  ==
 
== Reconstruction information  ==
−
* [[orthology]]:
+
* Category: [[orthology]]
−
** [[pantograph]]:
+
** Source: [[orthology-athaliana]]
−
*** [[esiliculosus]]
+
*** Tool: [[pantograph]]
−
* [[manual]]:
+
** Source: [[orthology-synechocystis]]
−
** [[primary_network]]
+
*** Tool: [[pantograph]]
−
* [[annotation]]:
+
** Source: [[orthology-esiliculosus]]
−
** [[pathwaytools]]:
+
*** Tool: [[pantograph]]
−
*** [[experimental_annotation]]
+
* Category: [[manual]]
−
*** [[in-silico_annotation]]
+
** Source: [[manual-primary_network]]
 +
* Category: [[annotation]]
 +
** Source: [[annotation-experimental_annotation]]
 +
*** Tool: [[pathwaytools]]
 +
** Source: [[annotation-in-silico_annotation]]
 +
*** Tool: [[pathwaytools]]
 
== External links  ==
 
== External links  ==
 
* RHEA:
 
* RHEA:
−
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=23540 23540]
+
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=27678 27678]
 
* LIGAND-RXN:
 
* LIGAND-RXN:
−
** [http://www.genome.jp/dbget-bin/www_bget?R05578 R05578]
+
** [http://www.genome.jp/dbget-bin/www_bget?R02326 R02326]
−
* UNIPROT:
+
−
** [http://www.uniprot.org/uniprot/P47700 P47700]
+
−
** [http://www.uniprot.org/uniprot/O52914 O52914]
+
−
** [http://www.uniprot.org/uniprot/P43818 P43818]
+
−
** [http://www.uniprot.org/uniprot/O26157 O26157]
+
−
** [http://www.uniprot.org/uniprot/Q9ZLJ1 Q9ZLJ1]
+
−
** [http://www.uniprot.org/uniprot/O25360 O25360]
+
−
** [http://www.uniprot.org/uniprot/O51345 O51345]
+
−
** [http://www.uniprot.org/uniprot/Q9Z7Z3 Q9Z7Z3]
+
−
** [http://www.uniprot.org/uniprot/P96551 P96551]
+
−
** [http://www.uniprot.org/uniprot/O67271 O67271]
+
−
** [http://www.uniprot.org/uniprot/O83679 O83679]
+
−
** [http://www.uniprot.org/uniprot/Q9ZLZ7 Q9ZLZ7]
+
−
** [http://www.uniprot.org/uniprot/Q9PP78 Q9PP78]
+
−
** [http://www.uniprot.org/uniprot/Q9CDZ7 Q9CDZ7]
+
−
** [http://www.uniprot.org/uniprot/O84451 O84451]
+
−
** [http://www.uniprot.org/uniprot/Q9X2I8 Q9X2I8]
+
−
** [http://www.uniprot.org/uniprot/Q9JWT4 Q9JWT4]
+
−
** [http://www.uniprot.org/uniprot/Q9ZDK3 Q9ZDK3]
+
−
** [http://www.uniprot.org/uniprot/Q9X172 Q9X172]
+
−
** [http://www.uniprot.org/uniprot/Q58772 Q58772]
+
−
** [http://www.uniprot.org/uniprot/Q9ZCT8 Q9ZCT8]
+
−
** [http://www.uniprot.org/uniprot/P59690 P59690]
+
−
** [http://www.uniprot.org/uniprot/Q43768 Q43768]
+
−
** [http://www.uniprot.org/uniprot/Q43794 Q43794]
+
−
** [http://www.uniprot.org/uniprot/P46655 P46655]
+
−
** [http://www.uniprot.org/uniprot/P48525 P48525]
+
−
** [http://www.uniprot.org/uniprot/P75114 P75114]
+
−
** [http://www.uniprot.org/uniprot/Q49061 Q49061]
+
−
** [http://www.uniprot.org/uniprot/P22249 P22249]
+
−
** [http://www.uniprot.org/uniprot/P22250 P22250]
+
−
** [http://www.uniprot.org/uniprot/P04805 P04805]
+
−
** [http://www.uniprot.org/uniprot/P07814 P07814]
+
−
** [http://www.uniprot.org/uniprot/P15189 P15189]
+
−
** [http://www.uniprot.org/uniprot/O65253 O65253]
+
−
** [http://www.uniprot.org/uniprot/O68055 O68055]
+
−
** [http://www.uniprot.org/uniprot/O68142 O68142]
+
−
** [http://www.uniprot.org/uniprot/O86528 O86528]
+
−
** [http://www.uniprot.org/uniprot/O13775 O13775]
+
−
** [http://www.uniprot.org/uniprot/Q9ZFA3 Q9ZFA3]
+
−
** [http://www.uniprot.org/uniprot/O82462 O82462]
+
 
{{#set: direction=LEFT-TO-RIGHT}}
 
{{#set: direction=LEFT-TO-RIGHT}}
 
{{#set: common name=ORF}}
 
{{#set: common name=ORF}}
−
{{#set: common name=glutamyl-trna_synthetase}}
+
{{#set: common name=nucleoside_diphosphate_kinase}}
−
{{#set: ec number=EC-6.1.1.17}}
+
{{#set: common name=adenylate_kinase_domain-containing_protein_1}}
−
{{#set: gene associated=Tiso_gene_5046|Tiso_gene_5379}}
+
{{#set: ec number=EC-2.7.4.6}}
−
{{#set: in pathway=TRNA-CHARGING-PWY|PWY-5188}}
+
{{#set: gene associated=Tiso_gene_9290|Tiso_gene_18224|Tiso_gene_17272|Tiso_gene_16529|Tiso_gene_17271|Tiso_gene_195}}
−
{{#set: reconstruction category=orthology}}
+
{{#set: in pathway=PWY-7210|PWY-7198|PWY-7184|PWY-7197|PWY0-166|PWY-6545}}
−
{{#set: reconstruction tool=pantograph}}
+
{{#set: reconstruction category=orthology|manual|annotation}}
−
{{#set: reconstruction source=esiliculosus}}
+
{{#set: reconstruction source=annotation-experimental_annotation|orthology-esiliculosus|annotation-in-silico_annotation|orthology-athaliana|orthology-synechocystis|manual-primary_network}}
−
{{#set: reconstruction category=manual}}
+
{{#set: reconstruction tool=pantograph|pathwaytools}}
−
{{#set: reconstruction source=primary_network}}
+
−
{{#set: reconstruction category=annotation}}
+
−
{{#set: reconstruction tool=pathwaytools}}
+
−
{{#set: reconstruction source=experimental_annotation|in-silico_annotation}}
+

Revision as of 19:29, 18 March 2018

Reaction DCDPKIN-RXN

  • direction:
    • LEFT-TO-RIGHT
  • common name:
    • ORF
    • nucleoside_diphosphate_kinase
    • adenylate_kinase_domain-containing_protein_1
  • ec number:
  • Synonym(s):

Reaction Formula

  • With identifiers:
  • With common name(s):
    • 1 ATP[c] + 1 dCDP[c] => 1 ADP[c] + 1 dCTP[c]

Genes associated with this reaction

Genes have been associated with this reaction based on different elements listed below.

Pathways

  • PWY-7210, pyrimidine deoxyribonucleotides biosynthesis from CTP: PWY-7210
    • 8 reactions found over 8 reactions in the full pathway
  • PWY-7198, pyrimidine deoxyribonucleotides de novo biosynthesis IV: PWY-7198
    • 6 reactions found over 7 reactions in the full pathway
  • PWY-7184, pyrimidine deoxyribonucleotides de novo biosynthesis I: PWY-7184
    • 9 reactions found over 9 reactions in the full pathway
  • PWY-7197, pyrimidine deoxyribonucleotide phosphorylation: PWY-7197
    • 4 reactions found over 4 reactions in the full pathway
  • PWY0-166, superpathway of pyrimidine deoxyribonucleotides de novo biosynthesis (E. coli): PWY0-166
    • 12 reactions found over 17 reactions in the full pathway
  • PWY-6545, pyrimidine deoxyribonucleotides de novo biosynthesis III: PWY-6545
    • 8 reactions found over 9 reactions in the full pathway

Reconstruction information

External links






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