Difference between revisions of "3.1.26.5-RXN"

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(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=GLURS-RXN GLURS-RXN] == * direction: ** LEFT-TO-RIGHT * common name: ** ORF ** glutamyl-trna_synthe...")
(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=3.1.26.5-RXN 3.1.26.5-RXN] == * direction: ** LEFT-TO-RIGHT * common name: ** oxidoreductase ** ORF...")
 
(2 intermediate revisions by the same user not shown)
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[[Category:Reaction]]
 
[[Category:Reaction]]
−
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=GLURS-RXN GLURS-RXN] ==
+
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=3.1.26.5-RXN 3.1.26.5-RXN] ==
 
* direction:
 
* direction:
 
** LEFT-TO-RIGHT
 
** LEFT-TO-RIGHT
 
* common name:
 
* common name:
 +
** oxidoreductase
 
** ORF
 
** ORF
−
** glutamyl-trna_synthetase
 
 
* ec number:
 
* ec number:
−
** [http://enzyme.expasy.org/EC/6.1.1.17 EC-6.1.1.17]
+
** [http://enzyme.expasy.org/EC/3.1.26.5 EC-3.1.26.5]
 
* Synonym(s):
 
* Synonym(s):
  
 
== Reaction Formula ==
 
== Reaction Formula ==
 
* With identifiers:
 
* With identifiers:
−
** 1 [[GLT]][c] '''+''' 1 [[ATP]][c] '''+''' 1 [[GLT-tRNAs]][c] '''=>''' 1 [[AMP]][c] '''+''' 1 [[Charged-GLT-tRNAs]][c] '''+''' 1 [[PPI]][c]
+
** 1 [[WATER]][c] '''+''' 1 [[CPD0-2352]][c] '''=>''' 1 [[tRNA-fragment]][c] '''+''' 1 [[CPD0-2353]][c]
 
* With common name(s):
 
* With common name(s):
−
** 1 L-glutamate[c] '''+''' 1 ATP[c] '''+''' 1 a tRNAglu[c] '''=>''' 1 AMP[c] '''+''' 1 an L-glutamyl-[tRNAGlu][c] '''+''' 1 diphosphate[c]
+
** 1 H2O[c] '''+''' 1 a tRNA precursor with a 5' extension and a short 3' extension[c] '''=>''' 1 a tRNA fragment[c] '''+''' 1 a tRNA precursor with a short 3' extension[c]
  
 
== Genes associated with this reaction  ==
 
== Genes associated with this reaction  ==
 
Genes have been associated with this reaction based on different elements listed below.
 
Genes have been associated with this reaction based on different elements listed below.
−
* [[Tiso_gene_5046]]
+
* Gene: [[Tiso_gene_14345]]
−
** IN-SILICO_ANNOTATION
+
** Source: [[annotation-in-silico_annotation]]
−
***EC-NUMBER
+
*** Assignment: EC-NUMBER
−
** EXPERIMENTAL_ANNOTATION
+
* Gene: [[Tiso_gene_10972]]
−
***EC-NUMBER
+
** Source: [[annotation-in-silico_annotation]]
−
* [[Tiso_gene_5379]]
+
*** Assignment: EC-NUMBER
−
** IN-SILICO_ANNOTATION
+
** Source: [[orthology-esiliculosus]]
−
***EC-NUMBER
+
* Gene: [[Tiso_gene_3898]]
−
** EXPERIMENTAL_ANNOTATION
+
** Source: [[annotation-in-silico_annotation]]
−
***EC-NUMBER
+
*** Assignment: EC-NUMBER
−
** [[pantograph]]-[[esiliculosus]]
+
* Gene: [[Tiso_gene_10971]]
 +
** Source: [[annotation-in-silico_annotation]]
 +
*** Assignment: EC-NUMBER
 +
* Gene: [[Tiso_gene_14344]]
 +
** Source: [[annotation-in-silico_annotation]]
 +
*** Assignment: EC-NUMBER
 
== Pathways  ==
 
== Pathways  ==
−
* [[TRNA-CHARGING-PWY]], tRNA charging: [http://metacyc.org/META/NEW-IMAGE?object=TRNA-CHARGING-PWY TRNA-CHARGING-PWY]
+
* [[PWY0-1479]], tRNA processing: [http://metacyc.org/META/NEW-IMAGE?object=PWY0-1479 PWY0-1479]
−
** '''21''' reactions found over '''21''' reactions in the full pathway
+
** '''4''' reactions found over '''10''' reactions in the full pathway
−
* [[PWY-5188]], tetrapyrrole biosynthesis I (from glutamate): [http://metacyc.org/META/NEW-IMAGE?object=PWY-5188 PWY-5188]
+
−
** '''6''' reactions found over '''6''' reactions in the full pathway
+
 
== Reconstruction information  ==
 
== Reconstruction information  ==
−
* [[orthology]]:
+
* Category: [[orthology]]
−
** [[pantograph]]:
+
** Source: [[orthology-esiliculosus]]
−
*** [[esiliculosus]]
+
*** Tool: [[pantograph]]
−
* [[manual]]:
+
* Category: [[annotation]]
−
** [[primary_network]]
+
** Source: [[annotation-in-silico_annotation]]
−
* [[annotation]]:
+
*** Tool: [[pathwaytools]]
−
** [[pathwaytools]]:
+
−
*** [[experimental_annotation]]
+
−
*** [[in-silico_annotation]]
+
 
== External links  ==
 
== External links  ==
−
* RHEA:
 
−
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=23540 23540]
 
−
* LIGAND-RXN:
 
−
** [http://www.genome.jp/dbget-bin/www_bget?R05578 R05578]
 
 
* UNIPROT:
 
* UNIPROT:
−
** [http://www.uniprot.org/uniprot/P47700 P47700]
+
** [http://www.uniprot.org/uniprot/Q02773 Q02773]
−
** [http://www.uniprot.org/uniprot/O52914 O52914]
+
** [http://www.uniprot.org/uniprot/P41812 P41812]
−
** [http://www.uniprot.org/uniprot/P43818 P43818]
+
** [http://www.uniprot.org/uniprot/P0A5X8 P0A5X8]
−
** [http://www.uniprot.org/uniprot/O26157 O26157]
+
** [http://www.uniprot.org/uniprot/P48206 P48206]
−
** [http://www.uniprot.org/uniprot/Q9ZLJ1 Q9ZLJ1]
+
** [http://www.uniprot.org/uniprot/Q9JW46 Q9JW46]
−
** [http://www.uniprot.org/uniprot/O25360 O25360]
+
** [http://www.uniprot.org/uniprot/Q9PNX5 Q9PNX5]
−
** [http://www.uniprot.org/uniprot/O51345 O51345]
+
** [http://www.uniprot.org/uniprot/Q9CJ73 Q9CJ73]
−
** [http://www.uniprot.org/uniprot/Q9Z7Z3 Q9Z7Z3]
+
** [http://www.uniprot.org/uniprot/P29433 P29433]
−
** [http://www.uniprot.org/uniprot/P96551 P96551]
+
** [http://www.uniprot.org/uniprot/P25817 P25817]
−
** [http://www.uniprot.org/uniprot/O67271 O67271]
+
** [http://www.uniprot.org/uniprot/P22835 P22835]
−
** [http://www.uniprot.org/uniprot/O83679 O83679]
+
** [http://www.uniprot.org/uniprot/P25814 P25814]
−
** [http://www.uniprot.org/uniprot/Q9ZLZ7 Q9ZLZ7]
+
** [http://www.uniprot.org/uniprot/P0A7Y8 P0A7Y8]
−
** [http://www.uniprot.org/uniprot/Q9PP78 Q9PP78]
+
** [http://www.uniprot.org/uniprot/Q55005 Q55005]
−
** [http://www.uniprot.org/uniprot/Q9CDZ7 Q9CDZ7]
+
−
** [http://www.uniprot.org/uniprot/O84451 O84451]
+
−
** [http://www.uniprot.org/uniprot/Q9X2I8 Q9X2I8]
+
−
** [http://www.uniprot.org/uniprot/Q9JWT4 Q9JWT4]
+
−
** [http://www.uniprot.org/uniprot/Q9ZDK3 Q9ZDK3]
+
−
** [http://www.uniprot.org/uniprot/Q9X172 Q9X172]
+
−
** [http://www.uniprot.org/uniprot/Q58772 Q58772]
+
−
** [http://www.uniprot.org/uniprot/Q9ZCT8 Q9ZCT8]
+
−
** [http://www.uniprot.org/uniprot/P59690 P59690]
+
−
** [http://www.uniprot.org/uniprot/Q43768 Q43768]
+
−
** [http://www.uniprot.org/uniprot/Q43794 Q43794]
+
−
** [http://www.uniprot.org/uniprot/P46655 P46655]
+
−
** [http://www.uniprot.org/uniprot/P48525 P48525]
+
−
** [http://www.uniprot.org/uniprot/P75114 P75114]
+
−
** [http://www.uniprot.org/uniprot/Q49061 Q49061]
+
−
** [http://www.uniprot.org/uniprot/P22249 P22249]
+
−
** [http://www.uniprot.org/uniprot/P22250 P22250]
+
−
** [http://www.uniprot.org/uniprot/P04805 P04805]
+
−
** [http://www.uniprot.org/uniprot/P07814 P07814]
+
−
** [http://www.uniprot.org/uniprot/P15189 P15189]
+
−
** [http://www.uniprot.org/uniprot/O65253 O65253]
+
−
** [http://www.uniprot.org/uniprot/O68055 O68055]
+
−
** [http://www.uniprot.org/uniprot/O68142 O68142]
+
−
** [http://www.uniprot.org/uniprot/O86528 O86528]
+
−
** [http://www.uniprot.org/uniprot/O13775 O13775]
+
−
** [http://www.uniprot.org/uniprot/Q9ZFA3 Q9ZFA3]
+
−
** [http://www.uniprot.org/uniprot/O82462 O82462]
+
 
{{#set: direction=LEFT-TO-RIGHT}}
 
{{#set: direction=LEFT-TO-RIGHT}}
 +
{{#set: common name=oxidoreductase}}
 
{{#set: common name=ORF}}
 
{{#set: common name=ORF}}
−
{{#set: common name=glutamyl-trna_synthetase}}
+
{{#set: ec number=EC-3.1.26.5}}
−
{{#set: ec number=EC-6.1.1.17}}
+
{{#set: gene associated=Tiso_gene_14345|Tiso_gene_10972|Tiso_gene_3898|Tiso_gene_10971|Tiso_gene_14344}}
−
{{#set: gene associated=Tiso_gene_5046|Tiso_gene_5379}}
+
{{#set: in pathway=PWY0-1479}}
−
{{#set: in pathway=TRNA-CHARGING-PWY|PWY-5188}}
+
{{#set: reconstruction category=orthology|annotation}}
−
{{#set: reconstruction category=orthology}}
+
{{#set: reconstruction source=annotation-in-silico_annotation|orthology-esiliculosus}}
−
{{#set: reconstruction tool=pantograph}}
+
{{#set: reconstruction tool=pantograph|pathwaytools}}
−
{{#set: reconstruction source=esiliculosus}}
+
−
{{#set: reconstruction category=manual}}
+
−
{{#set: reconstruction source=primary_network}}
+
−
{{#set: reconstruction category=annotation}}
+
−
{{#set: reconstruction tool=pathwaytools}}
+
−
{{#set: reconstruction source=experimental_annotation|in-silico_annotation}}
+

Latest revision as of 20:48, 21 March 2018

Reaction 3.1.26.5-RXN

  • direction:
    • LEFT-TO-RIGHT
  • common name:
    • oxidoreductase
    • ORF
  • ec number:
  • Synonym(s):

Reaction Formula

  • With identifiers:
  • With common name(s):
    • 1 H2O[c] + 1 a tRNA precursor with a 5' extension and a short 3' extension[c] => 1 a tRNA fragment[c] + 1 a tRNA precursor with a short 3' extension[c]

Genes associated with this reaction

Genes have been associated with this reaction based on different elements listed below.

Pathways

  • PWY0-1479, tRNA processing: PWY0-1479
    • 4 reactions found over 10 reactions in the full pathway

Reconstruction information

External links





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