Difference between revisions of "3.1.27.9-RXN"

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(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=GALACTOKIN-RXN GALACTOKIN-RXN] == * direction: ** REVERSIBLE * common name: ** ghmp_n-terminal_doma...")
(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=3.1.27.9-RXN 3.1.27.9-RXN] == * direction: ** LEFT-TO-RIGHT * common name: ** ORF ** trna_intron_ca...")
 
(One intermediate revision by the same user not shown)
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[[Category:Reaction]]
 
[[Category:Reaction]]
−
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=GALACTOKIN-RXN GALACTOKIN-RXN] ==
+
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=3.1.27.9-RXN 3.1.27.9-RXN] ==
 
* direction:
 
* direction:
−
** REVERSIBLE
+
** LEFT-TO-RIGHT
 
* common name:
 
* common name:
−
** ghmp_n-terminal_domain-containing_protein
 
 
** ORF
 
** ORF
−
** galactokinase-like_protein
+
** trna_intron_catalytic_cterminal_subfamily_protein
 
* ec number:
 
* ec number:
−
** [http://enzyme.expasy.org/EC/2.7.1.6 EC-2.7.1.6]
+
** [http://enzyme.expasy.org/EC/4.6.1.16 EC-4.6.1.16]
 
* Synonym(s):
 
* Synonym(s):
  
 
== Reaction Formula ==
 
== Reaction Formula ==
 
* With identifiers:
 
* With identifiers:
−
** 1 [[ATP]][c] '''+''' 1 [[ALPHA-D-GALACTOSE]][c] '''<=>''' 1 [[PROTON]][c] '''+''' 1 [[ADP]][c] '''+''' 1 [[GALACTOSE-1P]][c]
+
** 1 [[CPD0-2350]][c] '''=>''' 1 [[Pre-tRNA-3-prime-half-molecules]][c] '''+''' 1 [[Pre-tRNA-5-prime-half-molecules]][c] '''+''' 1 [[tRNA-Introns]][c]
 
* With common name(s):
 
* With common name(s):
−
** 1 ATP[c] '''+''' 1 &alpha;-D-galactose[c] '''<=>''' 1 H+[c] '''+''' 1 ADP[c] '''+''' 1 &alpha;-D-galactose 1-phosphate[c]
+
** 1 a polycistronic tRNA precursor[c] '''=>''' 1 a 3'-half-tRNA molecule with a 5'-OH end[c] '''+''' 1 a 5'-half-tRNA molecule with a 2',3'-cyclic phosphate end[c] '''+''' 1 a tRNA intron with a 2',3'-cyclic phosphate and a 5'-hydroxyl terminus[c]
  
 
== Genes associated with this reaction  ==
 
== Genes associated with this reaction  ==
 
Genes have been associated with this reaction based on different elements listed below.
 
Genes have been associated with this reaction based on different elements listed below.
−
* [[Tiso_gene_11795]]
+
* Gene: [[Tiso_gene_3776]]
−
** IN-SILICO_ANNOTATION
+
** Source: [[annotation-in-silico_annotation]]
−
***EC-NUMBER
+
*** Assignment: EC-NUMBER
−
* [[Tiso_gene_5042]]
+
* Gene: [[Tiso_gene_10338]]
−
** IN-SILICO_ANNOTATION
+
** Source: [[annotation-in-silico_annotation]]
−
***EC-NUMBER
+
*** Assignment: EC-NUMBER
−
* [[Tiso_gene_10797]]
+
* Gene: [[Tiso_gene_5254]]
−
** IN-SILICO_ANNOTATION
+
** Source: [[annotation-in-silico_annotation]]
−
***EC-NUMBER
+
*** Assignment: EC-NUMBER
−
** EXPERIMENTAL_ANNOTATION
+
−
***EC-NUMBER
+
−
** [[pantograph]]-[[athaliana]]
+
−
** [[pantograph]]-[[esiliculosus]]
+
−
* [[Tiso_gene_5041]]
+
−
** IN-SILICO_ANNOTATION
+
−
***EC-NUMBER
+
−
* [[Tiso_gene_12191]]
+
−
** [[pantograph]]-[[creinhardtii]]
+
 
== Pathways  ==
 
== Pathways  ==
−
* [[PWY-6317]], D-galactose degradation I (Leloir pathway): [http://metacyc.org/META/NEW-IMAGE?object=PWY-6317 PWY-6317]
+
* [[PWY-6689]], tRNA splicing I: [http://metacyc.org/META/NEW-IMAGE?object=PWY-6689 PWY-6689]
−
** '''5''' reactions found over '''5''' reactions in the full pathway
+
** '''2''' reactions found over '''7''' reactions in the full pathway
−
* [[PWY66-422]], D-galactose degradation V (Leloir pathway): [http://metacyc.org/META/NEW-IMAGE?object=PWY66-422 PWY66-422]
+
* [[PWY-7803]], tRNA splicing II: [http://metacyc.org/META/NEW-IMAGE?object=PWY-7803 PWY-7803]
−
** '''5''' reactions found over '''5''' reactions in the full pathway
+
** '''1''' reactions found over '''2''' reactions in the full pathway
−
* [[PWY-6527]], stachyose degradation: [http://metacyc.org/META/NEW-IMAGE?object=PWY-6527 PWY-6527]
+
−
** '''7''' reactions found over '''7''' reactions in the full pathway
+
−
* [[PWY-3821]], D-galactose degradation III: [http://metacyc.org/META/NEW-IMAGE?object=PWY-3821 PWY-3821]
+
−
** '''3''' reactions found over '''3''' reactions in the full pathway
+
 
== Reconstruction information  ==
 
== Reconstruction information  ==
−
* Category: [[orthology]]
 
−
** Source: [[orthology-athaliana]]
 
−
*** Tool: [[pantograph]]
 
−
** Source: [[orthology-creinhardtii]]
 
−
*** Tool: [[pantograph]]
 
−
** Source: [[orthology-esiliculosus]]
 
−
*** Tool: [[pantograph]]
 
 
* Category: [[annotation]]
 
* Category: [[annotation]]
−
** Source: [[annotation-experimental_annotation]]
 
−
*** Tool: [[pathwaytools]]
 
 
** Source: [[annotation-in-silico_annotation]]
 
** Source: [[annotation-in-silico_annotation]]
 
*** Tool: [[pathwaytools]]
 
*** Tool: [[pathwaytools]]
 
== External links  ==
 
== External links  ==
−
* RHEA:
 
−
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=13553 13553]
 
−
* LIGAND-RXN:
 
−
** [http://www.genome.jp/dbget-bin/www_bget?R01092 R01092]
 
 
* UNIPROT:
 
* UNIPROT:
−
** [http://www.uniprot.org/uniprot/P09608 P09608]
+
** [http://www.uniprot.org/uniprot/O07118 O07118]
−
** [http://www.uniprot.org/uniprot/Q01415 Q01415]
+
{{#set: direction=LEFT-TO-RIGHT}}
−
** [http://www.uniprot.org/uniprot/P22713 P22713]
+
−
** [http://www.uniprot.org/uniprot/P31767 P31767]
+
−
** [http://www.uniprot.org/uniprot/Q8X7P4 Q8X7P4]
+
−
** [http://www.uniprot.org/uniprot/Q9R7D7 Q9R7D7]
+
−
** [http://www.uniprot.org/uniprot/P96993 P96993]
+
−
** [http://www.uniprot.org/uniprot/P04385 P04385]
+
−
** [http://www.uniprot.org/uniprot/P0A6T3 P0A6T3]
+
−
** [http://www.uniprot.org/uniprot/P13227 P13227]
+
−
** [http://www.uniprot.org/uniprot/P39574 P39574]
+
−
** [http://www.uniprot.org/uniprot/P13045 P13045]
+
−
** [http://www.uniprot.org/uniprot/Q9SEE5 Q9SEE5]
+
−
{{#set: direction=REVERSIBLE}}
+
−
{{#set: common name=ghmp_n-terminal_domain-containing_protein}}
+
 
{{#set: common name=ORF}}
 
{{#set: common name=ORF}}
−
{{#set: common name=galactokinase-like_protein}}
+
{{#set: common name=trna_intron_catalytic_cterminal_subfamily_protein}}
−
{{#set: ec number=EC-2.7.1.6}}
+
{{#set: ec number=EC-4.6.1.16}}
−
{{#set: gene associated=Tiso_gene_11795|Tiso_gene_5042|Tiso_gene_10797|Tiso_gene_5041|Tiso_gene_12191}}
+
{{#set: gene associated=Tiso_gene_3776|Tiso_gene_10338|Tiso_gene_5254}}
−
{{#set: in pathway=PWY-6317|PWY66-422|PWY-6527|PWY-3821}}
+
{{#set: in pathway=PWY-6689|PWY-7803}}
−
{{#set: reconstruction category=orthology|annotation}}
+
{{#set: reconstruction category=annotation}}
−
{{#set: reconstruction source=orthology-creinhardtii|orthology-athaliana|annotation-in-silico_annotation|orthology-esiliculosus|annotation-experimental_annotation}}
+
{{#set: reconstruction source=annotation-in-silico_annotation}}
−
{{#set: reconstruction tool=pantograph|pathwaytools}}
+
{{#set: reconstruction tool=pathwaytools}}

Latest revision as of 20:29, 21 March 2018

Reaction 3.1.27.9-RXN

  • direction:
    • LEFT-TO-RIGHT
  • common name:
    • ORF
    • trna_intron_catalytic_cterminal_subfamily_protein
  • ec number:
  • Synonym(s):

Reaction Formula

Genes associated with this reaction

Genes have been associated with this reaction based on different elements listed below.

Pathways

  • PWY-6689, tRNA splicing I: PWY-6689
    • 2 reactions found over 7 reactions in the full pathway
  • PWY-7803, tRNA splicing II: PWY-7803
    • 1 reactions found over 2 reactions in the full pathway

Reconstruction information

External links





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