Difference between revisions of "3.1.27.9-RXN"

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(Created page with "Category:Pathway == Pathway [http://metacyc.org/META/NEW-IMAGE?object=PWY-6113 PWY-6113] == * taxonomic range: ** [http://metacyc.org/META/NEW-IMAGE?object=TAX-1762 TAX-17...")
(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=3.1.27.9-RXN 3.1.27.9-RXN] == * direction: ** LEFT-TO-RIGHT * common name: ** ORF ** trna_intron_ca...")
 
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[[Category:Pathway]]
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[[Category:Reaction]]
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== Pathway [http://metacyc.org/META/NEW-IMAGE?object=PWY-6113 PWY-6113] ==
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== Reaction [http://metacyc.org/META/NEW-IMAGE?object=3.1.27.9-RXN 3.1.27.9-RXN] ==
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* taxonomic range:
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* direction:
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** [http://metacyc.org/META/NEW-IMAGE?object=TAX-1762 TAX-1762]
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** LEFT-TO-RIGHT
 
* common name:
 
* common name:
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** superpathway of mycolate biosynthesis
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** ORF
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** trna_intron_catalytic_cterminal_subfamily_protein
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* ec number:
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** [http://enzyme.expasy.org/EC/4.6.1.16 EC-4.6.1.16]
 
* Synonym(s):
 
* Synonym(s):
  
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== Reaction(s) found ==
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== Reaction Formula ==
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'''8''' reactions found over '''12''' reactions in the full pathway
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* With identifiers:
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* [[PWY-4381]]
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** 1 [[CPD0-2350]][c] '''=>''' 1 [[Pre-tRNA-3-prime-half-molecules]][c] '''+''' 1 [[Pre-tRNA-5-prime-half-molecules]][c] '''+''' 1 [[tRNA-Introns]][c]
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** 0 associated gene:
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* With common name(s):
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* [[PWY-5971]]
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** 1 a polycistronic tRNA precursor[c] '''=>''' 1 a 3'-half-tRNA molecule with a 5'-OH end[c] '''+''' 1 a 5'-half-tRNA molecule with a 2',3'-cyclic phosphate end[c] '''+''' 1 a tRNA intron with a 2',3'-cyclic phosphate and a 5'-hydroxyl terminus[c]
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** 0 associated gene:
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* [[PWY-5989]]
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== Genes associated with this reaction  ==
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** 0 associated gene:
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Genes have been associated with this reaction based on different elements listed below.
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* [[PWYG-321]]
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* Gene: [[Tiso_gene_3776]]
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** 0 associated gene:
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** Source: [[annotation-in-silico_annotation]]
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* [[RXN-10059]]
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*** Assignment: EC-NUMBER
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** 4 associated gene(s):
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* Gene: [[Tiso_gene_10338]]
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*** [[Tiso_gene_15991]]
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** Source: [[annotation-in-silico_annotation]]
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*** [[Tiso_gene_19302]]
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*** Assignment: EC-NUMBER
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*** [[Tiso_gene_14485]]
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* Gene: [[Tiso_gene_5254]]
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*** [[Tiso_gene_5939]]
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** Source: [[annotation-in-silico_annotation]]
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** 3 reconstruction source(s) associated:
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*** Assignment: EC-NUMBER
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*** [[annotation-in-silico_annotation]]
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== Pathways  ==
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*** [[annotation-experimental_annotation]]
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* [[PWY-6689]], tRNA splicing I: [http://metacyc.org/META/NEW-IMAGE?object=PWY-6689 PWY-6689]
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*** [[orthology-esiliculosus]]
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** '''2''' reactions found over '''7''' reactions in the full pathway
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* [[RXN-10060]]
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* [[PWY-7803]], tRNA splicing II: [http://metacyc.org/META/NEW-IMAGE?object=PWY-7803 PWY-7803]
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** 2 associated gene(s):
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** '''1''' reactions found over '''2''' reactions in the full pathway
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*** [[Tiso_gene_9885]]
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== Reconstruction information  ==
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*** [[Tiso_gene_13083]]
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* Category: [[annotation]]
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** 3 reconstruction source(s) associated:
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** Source: [[annotation-in-silico_annotation]]
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*** [[annotation-experimental_annotation]]
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*** Tool: [[pathwaytools]]
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*** [[annotation-in-silico_annotation]]
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*** [[orthology-esiliculosus]]
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* [[RXN-10061]]
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** 1 associated gene(s):
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*** [[Tiso_gene_6884]]
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−
** 2 reconstruction source(s) associated:
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−
*** [[annotation-experimental_annotation]]
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−
*** [[annotation-in-silico_annotation]]
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* [[RXN-10062]]
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** 1 associated gene(s):
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*** [[Tiso_gene_10778]]
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** 1 reconstruction source(s) associated:
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−
*** [[orthology-esiliculosus]]
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== Reaction(s) not found ==
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== External links  ==
 
== External links  ==
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{{#set: taxonomic range=TAX-1762}}
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* UNIPROT:
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{{#set: common name=superpathway of mycolate biosynthesis}}
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** [http://www.uniprot.org/uniprot/O07118 O07118]
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{{#set: reaction found=8}}
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{{#set: direction=LEFT-TO-RIGHT}}
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{{#set: total reaction=12}}
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{{#set: common name=ORF}}
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{{#set: completion rate=67.0}}
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{{#set: common name=trna_intron_catalytic_cterminal_subfamily_protein}}
 +
{{#set: ec number=EC-4.6.1.16}}
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{{#set: gene associated=Tiso_gene_3776|Tiso_gene_10338|Tiso_gene_5254}}
 +
{{#set: in pathway=PWY-6689|PWY-7803}}
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{{#set: reconstruction category=annotation}}
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{{#set: reconstruction source=annotation-in-silico_annotation}}
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{{#set: reconstruction tool=pathwaytools}}

Latest revision as of 20:29, 21 March 2018

Reaction 3.1.27.9-RXN

  • direction:
    • LEFT-TO-RIGHT
  • common name:
    • ORF
    • trna_intron_catalytic_cterminal_subfamily_protein
  • ec number:
  • Synonym(s):

Reaction Formula

Genes associated with this reaction

Genes have been associated with this reaction based on different elements listed below.

Pathways

  • PWY-6689, tRNA splicing I: PWY-6689
    • 2 reactions found over 7 reactions in the full pathway
  • PWY-7803, tRNA splicing II: PWY-7803
    • 1 reactions found over 2 reactions in the full pathway

Reconstruction information

External links





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