Difference between revisions of "3.2.1.152-RXN"

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(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=GLYCINE--TRNA-LIGASE-RXN GLYCINE--TRNA-LIGASE-RXN] == * direction: ** LEFT-TO-RIGHT * common name:...")
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[[Category:Pathway]]
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[[Category:Reaction]]
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== Pathway [http://metacyc.org/META/NEW-IMAGE?object=PWY-7398 PWY-7398] ==
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== Reaction [http://metacyc.org/META/NEW-IMAGE?object=GLYCINE--TRNA-LIGASE-RXN GLYCINE--TRNA-LIGASE-RXN] ==
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* taxonomic range:
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* direction:
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** [http://metacyc.org/META/NEW-IMAGE?object=TAX-4751 TAX-4751]
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** LEFT-TO-RIGHT
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** [http://metacyc.org/META/NEW-IMAGE?object=TAX-33090 TAX-33090]
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** [http://metacyc.org/META/NEW-IMAGE?object=TAX-2 TAX-2]
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* common name:
 
* common name:
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** coumarins biosynthesis (engineered)
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** glycyl-trna_synthetase
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** ORF
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* ec number:
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** [http://enzyme.expasy.org/EC/6.1.1.14 EC-6.1.1.14]
 
* Synonym(s):
 
* Synonym(s):
  
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== Reaction(s) found ==
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== Reaction Formula ==
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'''3''' reactions found over '''13''' reactions in the full pathway
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* With identifiers:
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* [[4-COUMARATE--COA-LIGASE-RXN]]
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** 1 [[GLY]][c] '''+''' 1 [[ATP]][c] '''+''' 1 [[GLY-tRNAs]][c] '''=>''' 1 [[PPI]][c] '''+''' 1 [[Charged-GLY-tRNAs]][c] '''+''' 1 [[AMP]][c]
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* [[CAFFEOYL-COA-O-METHYLTRANSFERASE-RXN]]
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* With common name(s):
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* [[RXN-1126]]
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** 1 glycine[c] '''+''' 1 ATP[c] '''+''' 1 a tRNAgly[c] '''=>''' 1 diphosphate[c] '''+''' 1 a glycyl-[tRNAgly][c] '''+''' 1 AMP[c]
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== Reaction(s) not found ==
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* [http://metacyc.org/META/NEW-IMAGE?object=RXN-12349 RXN-12349]
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== Genes associated with this reaction  ==
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* [http://metacyc.org/META/NEW-IMAGE?object=RXN-12350 RXN-12350]
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Genes have been associated with this reaction based on different elements listed below.
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* [http://metacyc.org/META/NEW-IMAGE?object=RXN-12963 RXN-12963]
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* [[Tiso_gene_14743]]
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* [http://metacyc.org/META/NEW-IMAGE?object=RXN-12965 RXN-12965]
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** IN-SILICO_ANNOTATION
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* [http://metacyc.org/META/NEW-IMAGE?object=RXN-14987 RXN-14987]
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***EC-NUMBER
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* [http://metacyc.org/META/NEW-IMAGE?object=RXN-14988 RXN-14988]
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** [[pantograph]]-[[esiliculosus]]
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* [http://metacyc.org/META/NEW-IMAGE?object=RXN-14990 RXN-14990]
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* [[Tiso_gene_14742]]
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* [http://metacyc.org/META/NEW-IMAGE?object=RXN-16762 RXN-16762]
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** EXPERIMENTAL_ANNOTATION
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* [http://metacyc.org/META/NEW-IMAGE?object=RXN-16763 RXN-16763]
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***EC-NUMBER
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* [http://metacyc.org/META/NEW-IMAGE?object=RXN-9697 RXN-9697]
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* [[Tiso_gene_3788]]
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** IN-SILICO_ANNOTATION
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***EC-NUMBER
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** EXPERIMENTAL_ANNOTATION
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***EC-NUMBER
 +
== Pathways  ==
 +
* [[TRNA-CHARGING-PWY]], tRNA charging: [http://metacyc.org/META/NEW-IMAGE?object=TRNA-CHARGING-PWY TRNA-CHARGING-PWY]
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** '''21''' reactions found over '''21''' reactions in the full pathway
 +
== Reconstruction information  ==
 +
* Category: [[orthology]]
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** Source: [[orthology-esiliculosus]]
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*** Tool: [[pantograph]]
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* Category: [[annotation]]
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** Source: [[annotation-experimental_annotation]]
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*** Tool: [[pathwaytools]]
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** Source: [[annotation-in-silico_annotation]]
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*** Tool: [[pathwaytools]]
 
== External links  ==
 
== External links  ==
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{{#set: taxonomic range=TAX-4751}}
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* RHEA:
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{{#set: taxonomic range=TAX-33090}}
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** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=16013 16013]
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{{#set: taxonomic range=TAX-2}}
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* LIGAND-RXN:
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{{#set: common name=coumarins biosynthesis (engineered)}}
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** [http://www.genome.jp/dbget-bin/www_bget?R03654 R03654]
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{{#set: reaction found=3}}
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* UNIPROT:
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{{#set: reaction not found=13}}
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** [http://www.uniprot.org/uniprot/P41250 P41250]
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{{#set: completion rate=23.0}}
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** [http://www.uniprot.org/uniprot/P54380 P54380]
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** [http://www.uniprot.org/uniprot/Q9ZCB1 Q9ZCB1]
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** [http://www.uniprot.org/uniprot/P43822 P43822]
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** [http://www.uniprot.org/uniprot/P54381 P54381]
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** [http://www.uniprot.org/uniprot/O51344 O51344]
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** [http://www.uniprot.org/uniprot/Q46371 Q46371]
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** [http://www.uniprot.org/uniprot/Q9ZCB0 Q9ZCB0]
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** [http://www.uniprot.org/uniprot/Q9WY59 Q9WY59]
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** [http://www.uniprot.org/uniprot/P43821 P43821]
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** [http://www.uniprot.org/uniprot/O83678 O83678]
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** [http://www.uniprot.org/uniprot/Q9WY60 Q9WY60]
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** [http://www.uniprot.org/uniprot/Q9PPK3 Q9PPK3]
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** [http://www.uniprot.org/uniprot/P56454 P56454]
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** [http://www.uniprot.org/uniprot/Q9PN63 Q9PN63]
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** [http://www.uniprot.org/uniprot/Q57681 Q57681]
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** [http://www.uniprot.org/uniprot/P67029 P67029]
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** [http://www.uniprot.org/uniprot/O67081 O67081]
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** [http://www.uniprot.org/uniprot/O67898 O67898]
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** [http://www.uniprot.org/uniprot/O59235 O59235]
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** [http://www.uniprot.org/uniprot/P47493 P47493]
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** [http://www.uniprot.org/uniprot/Q9ZKP1 Q9ZKP1]
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** [http://www.uniprot.org/uniprot/Q9JW67 Q9JW67]
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** [http://www.uniprot.org/uniprot/P56453 P56453]
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** [http://www.uniprot.org/uniprot/O27874 O27874]
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** [http://www.uniprot.org/uniprot/Q9ZKM9 Q9ZKM9]
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** [http://www.uniprot.org/uniprot/Q9CGK0 Q9CGK0]
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** [http://www.uniprot.org/uniprot/P38088 P38088]
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** [http://www.uniprot.org/uniprot/Q06817 Q06817]
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** [http://www.uniprot.org/uniprot/Q51114 Q51114]
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** [http://www.uniprot.org/uniprot/P75425 P75425]
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** [http://www.uniprot.org/uniprot/Q55716 Q55716]
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** [http://www.uniprot.org/uniprot/P00960 P00960]
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** [http://www.uniprot.org/uniprot/P00961 P00961]
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** [http://www.uniprot.org/uniprot/Q8L785 Q8L785]
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{{#set: direction=LEFT-TO-RIGHT}}
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{{#set: common name=glycyl-trna_synthetase}}
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{{#set: common name=ORF}}
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{{#set: ec number=EC-6.1.1.14}}
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{{#set: gene associated=Tiso_gene_14743|Tiso_gene_14742|Tiso_gene_3788}}
 +
{{#set: in pathway=TRNA-CHARGING-PWY}}
 +
{{#set: reconstruction category=orthology|annotation}}
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{{#set: reconstruction source=annotation-experimental_annotation|annotation-in-silico_annotation|orthology-esiliculosus}}
 +
{{#set: reconstruction tool=pantograph|pathwaytools}}

Revision as of 18:58, 18 March 2018

Reaction GLYCINE--TRNA-LIGASE-RXN

  • direction:
    • LEFT-TO-RIGHT
  • common name:
    • glycyl-trna_synthetase
    • ORF
  • ec number:
  • Synonym(s):

Reaction Formula

  • With identifiers:
  • With common name(s):
    • 1 glycine[c] + 1 ATP[c] + 1 a tRNAgly[c] => 1 diphosphate[c] + 1 a glycyl-[tRNAgly][c] + 1 AMP[c]

Genes associated with this reaction

Genes have been associated with this reaction based on different elements listed below.

Pathways

Reconstruction information

External links





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