Difference between revisions of "4-HYDROXY-2-KETOPIMELATE-LYSIS-RXN"

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(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN0-6491 RXN0-6491] == * direction: ** LEFT-TO-RIGHT * common name: ** dihydroorotate dehydrogenas...")
 
(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=4-HYDROXY-2-KETOPIMELATE-LYSIS-RXN 4-HYDROXY-2-KETOPIMELATE-LYSIS-RXN] == * direction: ** LEFT-TO-R...")
 
(3 intermediate revisions by the same user not shown)
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[[Category:Reaction]]
 
[[Category:Reaction]]
−
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN0-6491 RXN0-6491] ==
+
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=4-HYDROXY-2-KETOPIMELATE-LYSIS-RXN 4-HYDROXY-2-KETOPIMELATE-LYSIS-RXN] ==
 
* direction:
 
* direction:
 
** LEFT-TO-RIGHT
 
** LEFT-TO-RIGHT
−
* common name:
 
−
** dihydroorotate dehydrogenase
 
−
** ORF
 
 
* ec number:
 
* ec number:
−
** [http://enzyme.expasy.org/EC/1.3.5.2 EC-1.3.5.2]
+
** [http://enzyme.expasy.org/EC/4.1.2.52 EC-4.1.2.52]
 
* Synonym(s):
 
* Synonym(s):
  
 
== Reaction Formula ==
 
== Reaction Formula ==
 
* With identifiers:
 
* With identifiers:
−
** 1 [[Ubiquinones]][c] '''+''' 1 [[DI-H-OROTATE]][c] '''=>''' 1 [[Ubiquinols]][c] '''+''' 1 [[OROTATE]][c]
+
** 1 [[CPD-804]][c] '''=>''' 1 [[SUCC-S-ALD]][c] '''+''' 1 [[PYRUVATE]][c]
 
* With common name(s):
 
* With common name(s):
−
** 1 a ubiquinone[c] '''+''' 1 (S)-dihydroorotate[c] '''=>''' 1 an ubiquinol[c] '''+''' 1 orotate[c]
+
** 1 (4S)-4-hydroxy-2-oxoheptanedioate[c] '''=>''' 1 succinate semialdehyde[c] '''+''' 1 pyruvate[c]
  
 
== Genes associated with this reaction  ==
 
== Genes associated with this reaction  ==
 
Genes have been associated with this reaction based on different elements listed below.
 
Genes have been associated with this reaction based on different elements listed below.
−
* [[Tiso_gene_4735]]
+
* Gene: [[Tiso_gene_13940]]
−
** IN-SILICO_ANNOTATION
+
** Source: [[orthology-athaliana]]
−
***EC-NUMBER
+
** Source: [[orthology-esiliculosus]]
−
* [[Tiso_gene_5280]]
+
−
** [[pantograph]]-[[esiliculosus]]
+
 
== Pathways  ==
 
== Pathways  ==
 +
* [[3-HYDROXYPHENYLACETATE-DEGRADATION-PWY]], 4-hydroxyphenylacetate degradation: [http://metacyc.org/META/NEW-IMAGE?object=3-HYDROXYPHENYLACETATE-DEGRADATION-PWY 3-HYDROXYPHENYLACETATE-DEGRADATION-PWY]
 +
** '''2''' reactions found over '''8''' reactions in the full pathway
 
== Reconstruction information  ==
 
== Reconstruction information  ==
−
* [[orthology]]:
+
* Category: [[orthology]]
−
** [[pantograph]]:
+
** Source: [[orthology-athaliana]]
−
*** [[esiliculosus]]
+
*** Tool: [[pantograph]]
−
* [[manual]]:
+
** Source: [[orthology-esiliculosus]]
−
** [[primary_network]]
+
*** Tool: [[pantograph]]
−
* [[annotation]]:
+
−
** [[pathwaytools]]:
+
−
*** [[in-silico_annotation]]
+
 
== External links  ==
 
== External links  ==
−
* RHEA:
+
* LIGAND-RXN:
−
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=28690 28690]
+
** [http://www.genome.jp/dbget-bin/www_bget?R01647 R01647]
 +
** [http://www.genome.jp/dbget-bin/www_bget?R01645 R01645]
 
{{#set: direction=LEFT-TO-RIGHT}}
 
{{#set: direction=LEFT-TO-RIGHT}}
−
{{#set: common name=dihydroorotate dehydrogenase}}
+
{{#set: ec number=EC-4.1.2.52}}
−
{{#set: common name=ORF}}
+
{{#set: gene associated=Tiso_gene_13940}}
−
{{#set: ec number=EC-1.3.5.2}}
+
{{#set: in pathway=3-HYDROXYPHENYLACETATE-DEGRADATION-PWY}}
−
{{#set: gene associated=Tiso_gene_4735|Tiso_gene_5280}}
+
−
{{#set: in pathway=}}
+
 
{{#set: reconstruction category=orthology}}
 
{{#set: reconstruction category=orthology}}
 +
{{#set: reconstruction source=orthology-athaliana|orthology-esiliculosus}}
 
{{#set: reconstruction tool=pantograph}}
 
{{#set: reconstruction tool=pantograph}}
−
{{#set: reconstruction source=esiliculosus}}
 
−
{{#set: reconstruction category=manual}}
 
−
{{#set: reconstruction source=primary_network}}
 
−
{{#set: reconstruction category=annotation}}
 
−
{{#set: reconstruction tool=pathwaytools}}
 
−
{{#set: reconstruction source=in-silico_annotation}}
 

Latest revision as of 21:13, 21 March 2018

Reaction 4-HYDROXY-2-KETOPIMELATE-LYSIS-RXN

  • direction:
    • LEFT-TO-RIGHT
  • ec number:
  • Synonym(s):

Reaction Formula

  • With identifiers:
  • With common name(s):
    • 1 (4S)-4-hydroxy-2-oxoheptanedioate[c] => 1 succinate semialdehyde[c] + 1 pyruvate[c]

Genes associated with this reaction

Genes have been associated with this reaction based on different elements listed below.

Pathways

Reconstruction information

External links




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