Difference between revisions of "6PGLUCONDEHYDROG-RXN"

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(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-12570 RXN-12570] == * direction: ** LEFT-TO-RIGHT * common name: ** 3-hydroxyacyl-_dehydrogenas...")
(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=6PGLUCONDEHYDROG-RXN 6PGLUCONDEHYDROG-RXN] == * direction: ** LEFT-TO-RIGHT * common name: ** phosp...")
 
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[[Category:Reaction]]
 
[[Category:Reaction]]
−
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-12570 RXN-12570] ==
+
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=6PGLUCONDEHYDROG-RXN 6PGLUCONDEHYDROG-RXN] ==
 
* direction:
 
* direction:
 
** LEFT-TO-RIGHT
 
** LEFT-TO-RIGHT
 
* common name:
 
* common name:
−
** 3-hydroxyacyl-_dehydrogenase
+
** phosphogluconate dehydrogenase [NAD(P)+-dependent, decarboxylating]
−
** hydroxyacyl-coenzyme_a_dehydrogenase_3-ketoacyl-coenzyme_a_thiolase_enoyl-coenzyme_a_hydratasealpha_subunit
+
−
** hydroxyacyl-coenzyme_a_mitochondrial
+
 
* ec number:
 
* ec number:
−
** [http://enzyme.expasy.org/EC/1.1.1.35 EC-1.1.1.35]
+
** [http://enzyme.expasy.org/EC/1.1.1.351 EC-1.1.1.351]
 
* Synonym(s):
 
* Synonym(s):
 +
** 6PGD
 +
** 6-phosphogluconic carboxylase
 +
** 6-phosphogluconic dehydrogenase
 +
** Phosphogluconic acid dehydrogenase
  
 
== Reaction Formula ==
 
== Reaction Formula ==
 
* With identifiers:
 
* With identifiers:
−
** 1 [[K-HEXANOYL-COA]][c] '''+''' 1 [[PROTON]][c] '''+''' 1 [[NADH]][c] '''=>''' 1 [[OH-HEXANOYL-COA]][c] '''+''' 1 [[NAD]][c]
+
** 1 [[CPD-2961]][c] '''+''' 1 [[NAD-P-OR-NOP]][c] '''=>''' 1 [[RIBULOSE-5P]][c] '''+''' 1 [[CARBON-DIOXIDE]][c] '''+''' 1 [[NADH-P-OR-NOP]][c]
 
* With common name(s):
 
* With common name(s):
−
** 1 3-oxohexanoyl-CoA[c] '''+''' 1 H+[c] '''+''' 1 NADH[c] '''=>''' 1 (S)-3-hydroxyhexanoyl-CoA[c] '''+''' 1 NAD+[c]
+
** 1 D-gluconate 6-phosphate[c] '''+''' 1 NAD(P)+[c] '''=>''' 1 D-ribulose 5-phosphate[c] '''+''' 1 CO2[c] '''+''' 1 NAD(P)H[c]
  
 
== Genes associated with this reaction  ==
 
== Genes associated with this reaction  ==
 
Genes have been associated with this reaction based on different elements listed below.
 
Genes have been associated with this reaction based on different elements listed below.
−
* Gene: [[Tiso_gene_14026]]
+
* Gene: [[Tiso_gene_91]]
−
** Source: [[annotation-in-silico_annotation]]
+
−
*** Assignment: EC-NUMBER
+
−
** Source: [[annotation-experimental_annotation]]
+
−
*** Assignment: EC-NUMBER
+
 
** Source: [[orthology-esiliculosus]]
 
** Source: [[orthology-esiliculosus]]
−
* Gene: [[Tiso_gene_14027]]
+
* Gene: [[Tiso_gene_20238]]
−
** Source: [[orthology-esiliculosus]]
+
−
* Gene: [[Tiso_gene_5857]]
+
−
** Source: [[annotation-in-silico_annotation]]
+
−
*** Assignment: EC-NUMBER
+
−
** Source: [[annotation-experimental_annotation]]
+
−
*** Assignment: EC-NUMBER
+
 
** Source: [[orthology-athaliana]]
 
** Source: [[orthology-athaliana]]
−
** Source: [[orthology-esiliculosus]]
+
** Source: [[orthology-athaliana]]
 +
** Source: [[orthology-synechocystis]]
 
** Source: [[orthology-creinhardtii]]
 
** Source: [[orthology-creinhardtii]]
 +
* Gene: [[Tiso_gene_7157]]
 +
** Source: [[orthology-synechocystis]]
 
** Source: [[orthology-creinhardtii]]
 
** Source: [[orthology-creinhardtii]]
−
* Gene: [[Tiso_gene_14262]]
 
−
** Source: [[annotation-in-silico_annotation]]
 
−
*** Assignment: EC-NUMBER
 
−
** Source: [[annotation-experimental_annotation]]
 
−
*** Assignment: EC-NUMBER
 
−
* Gene: [[Tiso_gene_18838]]
 
−
** Source: [[annotation-in-silico_annotation]]
 
−
*** Assignment: EC-NUMBER
 
−
* Gene: [[Tiso_gene_18839]]
 
−
** Source: [[annotation-in-silico_annotation]]
 
−
*** Assignment: EC-NUMBER
 
 
== Pathways  ==
 
== Pathways  ==
−
* [[PWY-6863]], pyruvate fermentation to hexanol (engineered): [http://metacyc.org/META/NEW-IMAGE?object=PWY-6863 PWY-6863]
+
* [[P122-PWY]], heterolactic fermentation: [http://metacyc.org/META/NEW-IMAGE?object=P122-PWY P122-PWY]
−
** '''5''' reactions found over '''11''' reactions in the full pathway
+
** '''14''' reactions found over '''18''' reactions in the full pathway
 
== Reconstruction information  ==
 
== Reconstruction information  ==
 
* Category: [[orthology]]
 
* Category: [[orthology]]
Line 55: Line 39:
 
*** Tool: [[pantograph]]
 
*** Tool: [[pantograph]]
 
** Source: [[orthology-creinhardtii]]
 
** Source: [[orthology-creinhardtii]]
 +
*** Tool: [[pantograph]]
 +
** Source: [[orthology-synechocystis]]
 
*** Tool: [[pantograph]]
 
*** Tool: [[pantograph]]
 
** Source: [[orthology-esiliculosus]]
 
** Source: [[orthology-esiliculosus]]
 
*** Tool: [[pantograph]]
 
*** Tool: [[pantograph]]
−
* Category: [[annotation]]
 
−
** Source: [[annotation-experimental_annotation]]
 
−
*** Tool: [[pathwaytools]]
 
−
** Source: [[annotation-in-silico_annotation]]
 
−
*** Tool: [[pathwaytools]]
 
 
== External links  ==
 
== External links  ==
 
* RHEA:
 
* RHEA:
−
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=31144 31144]
+
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=10116 10116]
−
* LIGAND-RXN:
+
* UNIPROT:
−
** [http://www.genome.jp/dbget-bin/www_bget?R04748 R04748]
+
** [http://www.uniprot.org/uniprot/P14332 P14332]
 +
** [http://www.uniprot.org/uniprot/P31072 P31072]
 +
** [http://www.uniprot.org/uniprot/Q9CDN4 Q9CDN4]
 +
** [http://www.uniprot.org/uniprot/P47506 P47506]
 +
** [http://www.uniprot.org/uniprot/Q9JWS3 Q9JWS3]
 +
** [http://www.uniprot.org/uniprot/P43774 P43774]
 +
** [http://www.uniprot.org/uniprot/P12013 P12013]
 +
** [http://www.uniprot.org/uniprot/P41576 P41576]
 +
** [http://www.uniprot.org/uniprot/P00350 P00350]
 +
** [http://www.uniprot.org/uniprot/P00349 P00349]
 +
** [http://www.uniprot.org/uniprot/P52209 P52209]
 +
** [http://www.uniprot.org/uniprot/P41581 P41581]
 +
** [http://www.uniprot.org/uniprot/P41582 P41582]
 +
** [http://www.uniprot.org/uniprot/Q59275 Q59275]
 +
** [http://www.uniprot.org/uniprot/P41583 P41583]
 +
** [http://www.uniprot.org/uniprot/Q60254 Q60254]
 +
** [http://www.uniprot.org/uniprot/P37754 P37754]
 +
** [http://www.uniprot.org/uniprot/Q59410 Q59410]
 +
** [http://www.uniprot.org/uniprot/P52207 P52207]
 +
** [http://www.uniprot.org/uniprot/P70718 P70718]
 +
** [http://www.uniprot.org/uniprot/Q7M451 Q7M451]
 +
** [http://www.uniprot.org/uniprot/P41572 P41572]
 +
** [http://www.uniprot.org/uniprot/P14062 P14062]
 +
** [http://www.uniprot.org/uniprot/P21577 P21577]
 +
** [http://www.uniprot.org/uniprot/P38720 P38720]
 +
** [http://www.uniprot.org/uniprot/Q40311 Q40311]
 +
** [http://www.uniprot.org/uniprot/P53319 P53319]
 +
** [http://www.uniprot.org/uniprot/O81237 O81237]
 +
** [http://www.uniprot.org/uniprot/O81238 O81238]
 +
** [http://www.uniprot.org/uniprot/O81239 O81239]
 +
** [http://www.uniprot.org/uniprot/O22111 O22111]
 +
** [http://www.uniprot.org/uniprot/Q17761 Q17761]
 +
** [http://www.uniprot.org/uniprot/O32911 O32911]
 
{{#set: direction=LEFT-TO-RIGHT}}
 
{{#set: direction=LEFT-TO-RIGHT}}
−
{{#set: common name=3-hydroxyacyl-_dehydrogenase}}
+
{{#set: common name=phosphogluconate dehydrogenase [NAD(P)+-dependent, decarboxylating]}}
−
{{#set: common name=hydroxyacyl-coenzyme_a_dehydrogenase_3-ketoacyl-coenzyme_a_thiolase_enoyl-coenzyme_a_hydratasealpha_subunit}}
+
{{#set: ec number=EC-1.1.1.351}}
−
{{#set: common name=hydroxyacyl-coenzyme_a_mitochondrial}}
+
{{#set: common name=6PGD|6-phosphogluconic carboxylase|6-phosphogluconic dehydrogenase|Phosphogluconic acid dehydrogenase}}
−
{{#set: ec number=EC-1.1.1.35}}
+
{{#set: gene associated=Tiso_gene_91|Tiso_gene_20238|Tiso_gene_7157}}
−
{{#set: gene associated=Tiso_gene_14026|Tiso_gene_14027|Tiso_gene_5857|Tiso_gene_14262|Tiso_gene_18838|Tiso_gene_18839}}
+
{{#set: in pathway=P122-PWY}}
−
{{#set: in pathway=PWY-6863}}
+
{{#set: reconstruction category=orthology}}
−
{{#set: reconstruction category=orthology|annotation}}
+
{{#set: reconstruction source=orthology-athaliana|orthology-creinhardtii|orthology-synechocystis|orthology-esiliculosus}}
−
{{#set: reconstruction source=annotation-experimental_annotation|orthology-creinhardtii|annotation-in-silico_annotation|orthology-athaliana|orthology-esiliculosus}}
+
{{#set: reconstruction tool=pantograph}}
−
{{#set: reconstruction tool=pantograph|pathwaytools}}
+

Latest revision as of 21:26, 21 March 2018

Reaction 6PGLUCONDEHYDROG-RXN

  • direction:
    • LEFT-TO-RIGHT
  • common name:
    • phosphogluconate dehydrogenase [NAD(P)+-dependent, decarboxylating]
  • ec number:
  • Synonym(s):
    • 6PGD
    • 6-phosphogluconic carboxylase
    • 6-phosphogluconic dehydrogenase
    • Phosphogluconic acid dehydrogenase

Reaction Formula

Genes associated with this reaction

Genes have been associated with this reaction based on different elements listed below.

Pathways

  • P122-PWY, heterolactic fermentation: P122-PWY
    • 14 reactions found over 18 reactions in the full pathway

Reconstruction information

External links

"phosphogluconate dehydrogenase [NAD(P)+-dependent, decarboxylating" cannot be used as a page name in this wiki.




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