Difference between revisions of "ACONITATEHYDR-RXN"

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(Created page with "Category:Metabolite == Metabolite [http://metacyc.org/META/NEW-IMAGE?object=DELTA3-ISOPENTENYL-PP DELTA3-ISOPENTENYL-PP] == * smiles: ** C=C(C)CCOP([O-])(=O)OP([O-])(=O)[O...")
(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=ACONITATEHYDR-RXN ACONITATEHYDR-RXN] == * direction: ** REVERSIBLE * common name: ** cis-aconitate...")
 
(2 intermediate revisions by the same user not shown)
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[[Category:Metabolite]]
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[[Category:Reaction]]
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== Metabolite [http://metacyc.org/META/NEW-IMAGE?object=DELTA3-ISOPENTENYL-PP DELTA3-ISOPENTENYL-PP] ==
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== Reaction [http://metacyc.org/META/NEW-IMAGE?object=ACONITATEHYDR-RXN ACONITATEHYDR-RXN] ==
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* smiles:
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* direction:
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** C=C(C)CCOP([O-])(=O)OP([O-])(=O)[O-]
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** REVERSIBLE
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* inchi key:
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** InChIKey=NUHSROFQTUXZQQ-UHFFFAOYSA-K
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* common name:
 
* common name:
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** isopentenyl diphosphate
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** cis-aconitate hydratase
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* molecular weight:
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** 243.069   
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* Synonym(s):
 
* Synonym(s):
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** isopentenyl-pp
 
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** isopentenyl pyrophosphate
 
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** IPP
 
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** δ(3)-isopentenyl-PP
 
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** Δ3-isopentenyl-PP
 
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** 3-methylbut-3-enyl diphosphate
 
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** 3-methylbut-3-enyl pyrophosphate
 
  
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== Reaction(s) known to consume the compound ==
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== Reaction Formula ==
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* [[FPPSYN-RXN]]
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* With identifiers:
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* [[TRANS-OCTAPRENYLTRANSTRANSFERASE-RXN]]
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** 1 [[CIS-ACONITATE]][c] '''+''' 1 [[WATER]][c] '''<=>''' 1 [[THREO-DS-ISO-CITRATE]][c]
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* [[GGPS]]
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* With common name(s):
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* [[GPPS]]
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** 1 cis-aconitate[c] '''+''' 1 H2O[c] '''<=>''' 1 D-threo-isocitrate[c]
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* [[RXN-11486]]
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* [[RXN-8999]]
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== Genes associated with this reaction  ==
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* [[FARNESYLTRANSTRANSFERASE-RXN]]
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Genes have been associated with this reaction based on different elements listed below.
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== Reaction(s) known to produce the compound ==
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* Gene: [[Tiso_gene_13007]]
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* [[DIPHOSPHOMEVALONTE-DECARBOXYLASE-RXN]]
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** Source: [[annotation-experimental_annotation]]
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* [[ISPH2-RXN]]
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*** Assignment: EC-NUMBER
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* [[IDS1]]
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== Pathways  ==
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== Reaction(s) of unknown directionality ==
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* [[PWY-5913]], partial TCA cycle (obligate autotrophs): [http://metacyc.org/META/NEW-IMAGE?object=PWY-5913 PWY-5913]
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* [[IPPISOM-RXN]]
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** '''9''' reactions found over '''11''' reactions in the full pathway
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* [[RXN0-5180]]
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* [[PWY-6969]], TCA cycle V (2-oxoglutarate:ferredoxin oxidoreductase): [http://metacyc.org/META/NEW-IMAGE?object=PWY-6969 PWY-6969]
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* [[GPPSYN-RXN]]
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** '''9''' reactions found over '''12''' reactions in the full pathway
 +
* [[PWY-6549]], L-glutamine biosynthesis III: [http://metacyc.org/META/NEW-IMAGE?object=PWY-6549 PWY-6549]
 +
** '''6''' reactions found over '''9''' reactions in the full pathway
 +
* [[PWY-5392]], reductive TCA cycle II: [http://metacyc.org/META/NEW-IMAGE?object=PWY-5392 PWY-5392]
 +
** '''5''' reactions found over '''12''' reactions in the full pathway
 +
* [[TCA]], TCA cycle I (prokaryotic): [http://metacyc.org/META/NEW-IMAGE?object=TCA TCA]
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** '''7''' reactions found over '''10''' reactions in the full pathway
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* [[P23-PWY]], reductive TCA cycle I: [http://metacyc.org/META/NEW-IMAGE?object=P23-PWY P23-PWY]
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** '''7''' reactions found over '''12''' reactions in the full pathway
 +
* [[P105-PWY]], TCA cycle IV (2-oxoglutarate decarboxylase): [http://metacyc.org/META/NEW-IMAGE?object=P105-PWY P105-PWY]
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** '''9''' reactions found over '''11''' reactions in the full pathway
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* [[GLYOXYLATE-BYPASS]], glyoxylate cycle: [http://metacyc.org/META/NEW-IMAGE?object=GLYOXYLATE-BYPASS GLYOXYLATE-BYPASS]
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** '''6''' reactions found over '''6''' reactions in the full pathway
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* [[FERMENTATION-PWY]], mixed acid fermentation: [http://metacyc.org/META/NEW-IMAGE?object=FERMENTATION-PWY FERMENTATION-PWY]
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** '''9''' reactions found over '''16''' reactions in the full pathway
 +
* [[PWY-6728]], methylaspartate cycle: [http://metacyc.org/META/NEW-IMAGE?object=PWY-6728 PWY-6728]
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** '''11''' reactions found over '''18''' reactions in the full pathway
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* [[REDCITCYC]], TCA cycle VIII (helicobacter): [http://metacyc.org/META/NEW-IMAGE?object=REDCITCYC REDCITCYC]
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** '''6''' reactions found over '''9''' reactions in the full pathway
 +
* [[PWY-7254]], TCA cycle VII (acetate-producers): [http://metacyc.org/META/NEW-IMAGE?object=PWY-7254 PWY-7254]
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** '''5''' reactions found over '''9''' reactions in the full pathway
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* [[PWY-7124]], ethylene biosynthesis V (engineered): [http://metacyc.org/META/NEW-IMAGE?object=PWY-7124 PWY-7124]
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** '''7''' reactions found over '''10''' reactions in the full pathway
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* [[PWY66-398]], TCA cycle III (animals): [http://metacyc.org/META/NEW-IMAGE?object=PWY66-398 PWY66-398]
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** '''10''' reactions found over '''11''' reactions in the full pathway
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* [[PWY-5690]], TCA cycle II (plants and fungi): [http://metacyc.org/META/NEW-IMAGE?object=PWY-5690 PWY-5690]
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** '''6''' reactions found over '''9''' reactions in the full pathway
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== Reconstruction information  ==
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* Category: [[annotation]]
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** Source: [[annotation-experimental_annotation]]
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*** Tool: [[pathwaytools]]
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** Source: [[annotation-in-silico_annotation]]
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*** Tool: [[pathwaytools]]
 
== External links  ==
 
== External links  ==
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* METABOLIGHTS : MTBLC128769
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* RHEA:
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* PUBCHEM:
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** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=22144 22144]
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** [http://pubchem.ncbi.nlm.nih.gov/summary/summary.cgi?cid=15983957 15983957]
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* LIGAND-RXN:
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* HMDB : HMDB01347
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** [http://www.genome.jp/dbget-bin/www_bget?R01900 R01900]
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* LIGAND-CPD:
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{{#set: direction=REVERSIBLE}}
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** [http://www.genome.jp/dbget-bin/www_bget?C00129 C00129]
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{{#set: common name=cis-aconitate hydratase}}
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* CHEMSPIDER:
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{{#set: gene associated=Tiso_gene_13007}}
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** [http://www.chemspider.com/Chemical-Structure.13115335.html 13115335]
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{{#set: in pathway=PWY-5913|PWY-6969|PWY-6549|PWY-5392|TCA|P23-PWY|P105-PWY|GLYOXYLATE-BYPASS|FERMENTATION-PWY|PWY-6728|REDCITCYC|PWY-7254|PWY-7124|PWY66-398|PWY-5690}}
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* CHEBI:
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{{#set: reconstruction category=annotation}}
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** [http://www.ebi.ac.uk/chebi/searchId.do?chebiId=128769 128769]
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{{#set: reconstruction source=annotation-experimental_annotation|annotation-in-silico_annotation}}
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* BIGG : ipdp
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{{#set: reconstruction tool=pathwaytools}}
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{{#set: smiles=C=C(C)CCOP([O-])(=O)OP([O-])(=O)[O-]}}
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{{#set: inchi key=InChIKey=NUHSROFQTUXZQQ-UHFFFAOYSA-K}}
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{{#set: common name=isopentenyl diphosphate}}
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{{#set: molecular weight=243.069    }}
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{{#set: common name=isopentenyl-pp|isopentenyl pyrophosphate|IPP|&delta;(3)-isopentenyl-PP|&Delta;3-isopentenyl-PP|3-methylbut-3-enyl diphosphate|3-methylbut-3-enyl pyrophosphate}}
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{{#set: consumed by=FPPSYN-RXN|TRANS-OCTAPRENYLTRANSTRANSFERASE-RXN|GGPS|GPPS|RXN-11486|RXN-8999|FARNESYLTRANSTRANSFERASE-RXN}}
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{{#set: produced by=DIPHOSPHOMEVALONTE-DECARBOXYLASE-RXN|ISPH2-RXN|IDS1}}
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{{#set: consumed or produced by=IPPISOM-RXN|RXN0-5180|GPPSYN-RXN}}
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Latest revision as of 20:38, 21 March 2018

Reaction ACONITATEHYDR-RXN

  • direction:
    • REVERSIBLE
  • common name:
    • cis-aconitate hydratase
  • Synonym(s):

Reaction Formula

Genes associated with this reaction

Genes have been associated with this reaction based on different elements listed below.

Pathways

  • PWY-5913, partial TCA cycle (obligate autotrophs): PWY-5913
    • 9 reactions found over 11 reactions in the full pathway
  • PWY-6969, TCA cycle V (2-oxoglutarate:ferredoxin oxidoreductase): PWY-6969
    • 9 reactions found over 12 reactions in the full pathway
  • PWY-6549, L-glutamine biosynthesis III: PWY-6549
    • 6 reactions found over 9 reactions in the full pathway
  • PWY-5392, reductive TCA cycle II: PWY-5392
    • 5 reactions found over 12 reactions in the full pathway
  • TCA, TCA cycle I (prokaryotic): TCA
    • 7 reactions found over 10 reactions in the full pathway
  • P23-PWY, reductive TCA cycle I: P23-PWY
    • 7 reactions found over 12 reactions in the full pathway
  • P105-PWY, TCA cycle IV (2-oxoglutarate decarboxylase): P105-PWY
    • 9 reactions found over 11 reactions in the full pathway
  • GLYOXYLATE-BYPASS, glyoxylate cycle: GLYOXYLATE-BYPASS
    • 6 reactions found over 6 reactions in the full pathway
  • FERMENTATION-PWY, mixed acid fermentation: FERMENTATION-PWY
    • 9 reactions found over 16 reactions in the full pathway
  • PWY-6728, methylaspartate cycle: PWY-6728
    • 11 reactions found over 18 reactions in the full pathway
  • REDCITCYC, TCA cycle VIII (helicobacter): REDCITCYC
    • 6 reactions found over 9 reactions in the full pathway
  • PWY-7254, TCA cycle VII (acetate-producers): PWY-7254
    • 5 reactions found over 9 reactions in the full pathway
  • PWY-7124, ethylene biosynthesis V (engineered): PWY-7124
    • 7 reactions found over 10 reactions in the full pathway
  • PWY66-398, TCA cycle III (animals): PWY66-398
    • 10 reactions found over 11 reactions in the full pathway
  • PWY-5690, TCA cycle II (plants and fungi): PWY-5690
    • 6 reactions found over 9 reactions in the full pathway

Reconstruction information

External links




Retrieved from "http://gem-aureme.irisa.fr/tisogem/index.php?title=ACONITATEHYDR-RXN&oldid=42881"