Difference between revisions of "ACP"

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(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-16393 RXN-16393] == * direction: ** LEFT-TO-RIGHT * common name: ** polyketide_synthase ** long...")
(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-11302 RXN-11302] == * direction: ** LEFT-TO-RIGHT * common name: ** peptidoglycan transpeptidas...")
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[[Category:Reaction]]
 
[[Category:Reaction]]
−
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-16393 RXN-16393] ==
+
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-11302 RXN-11302] ==
 
* direction:
 
* direction:
 
** LEFT-TO-RIGHT
 
** LEFT-TO-RIGHT
 
* common name:
 
* common name:
−
** polyketide_synthase
+
** peptidoglycan transpeptidase (Gram-negative bacteria)
−
** long_chain_acyl-_synthetase
+
** beta-lactamase
−
** acyl-_synthetase
+
−
** ORF
+
 
* ec number:
 
* ec number:
−
** [http://enzyme.expasy.org/EC/6.2.1.3 EC-6.2.1.3]
+
** [http://enzyme.expasy.org/EC/3.4.16.4 EC-3.4.16.4]
 
* Synonym(s):
 
* Synonym(s):
  
 
== Reaction Formula ==
 
== Reaction Formula ==
 
* With identifiers:
 
* With identifiers:
−
** 1 [[CO-A]][c] '''+''' 1 [[DODECANOATE]][c] '''+''' 1 [[ATP]][c] '''=>''' 1 [[AMP]][c] '''+''' 1 [[LAUROYLCOA-CPD]][c] '''+''' 1 [[PPI]][c]
+
** 2 [[CPD-12231]][c] '''=>''' 1 [[D-ALANINE]][c] '''+''' 1 [[CPD-12261]][c]
 
* With common name(s):
 
* With common name(s):
−
** 1 coenzyme A[c] '''+''' 1 laurate[c] '''+''' 1 ATP[c] '''=>''' 1 AMP[c] '''+''' 1 lauroyl-CoA[c] '''+''' 1 diphosphate[c]
+
** 2 a peptidoglycan dimer (meso-diaminopimelate containing)[c] '''=>''' 1 D-alanine[c] '''+''' 1 a peptidoglycan with D,D cross-links (meso-diaminopimelate containing)[c]
  
 
== Genes associated with this reaction  ==
 
== Genes associated with this reaction  ==
 
Genes have been associated with this reaction based on different elements listed below.
 
Genes have been associated with this reaction based on different elements listed below.
−
* [[Tiso_gene_500]]
+
* Gene: [[Tiso_gene_18870]]
−
** IN-SILICO_ANNOTATION
+
** Source: [[annotation-in-silico_annotation]]
−
***EC-NUMBER
+
*** Assignment: EC-NUMBER
−
* [[Tiso_gene_348]]
+
−
** IN-SILICO_ANNOTATION
+
−
***EC-NUMBER
+
−
** EXPERIMENTAL_ANNOTATION
+
−
***EC-NUMBER
+
−
* [[Tiso_gene_9394]]
+
−
** IN-SILICO_ANNOTATION
+
−
***EC-NUMBER
+
−
** EXPERIMENTAL_ANNOTATION
+
−
***EC-NUMBER
+
−
* [[Tiso_gene_135]]
+
−
** IN-SILICO_ANNOTATION
+
−
***EC-NUMBER
+
−
* [[Tiso_gene_13394]]
+
−
** IN-SILICO_ANNOTATION
+
−
***EC-NUMBER
+
−
* [[Tiso_gene_136]]
+
−
** IN-SILICO_ANNOTATION
+
−
***EC-NUMBER
+
−
* [[Tiso_gene_7855]]
+
−
** IN-SILICO_ANNOTATION
+
−
***EC-NUMBER
+
−
* [[Tiso_gene_10876]]
+
−
** IN-SILICO_ANNOTATION
+
−
***EC-NUMBER
+
−
* [[Tiso_gene_4191]]
+
−
** IN-SILICO_ANNOTATION
+
−
***EC-NUMBER
+
−
** EXPERIMENTAL_ANNOTATION
+
−
***EC-NUMBER
+
 
== Pathways  ==
 
== Pathways  ==
−
* [[PWY-5971]], palmitate biosynthesis II (bacteria and plants): [http://metacyc.org/META/NEW-IMAGE?object=PWY-5971 PWY-5971]
 
−
** '''31''' reactions found over '''31''' reactions in the full pathway
 
 
== Reconstruction information  ==
 
== Reconstruction information  ==
 
* Category: [[annotation]]
 
* Category: [[annotation]]
−
** Source: [[annotation-experimental_annotation]]
 
−
*** Tool: [[pathwaytools]]
 
 
** Source: [[annotation-in-silico_annotation]]
 
** Source: [[annotation-in-silico_annotation]]
 
*** Tool: [[pathwaytools]]
 
*** Tool: [[pathwaytools]]
 
== External links  ==
 
== External links  ==
 
{{#set: direction=LEFT-TO-RIGHT}}
 
{{#set: direction=LEFT-TO-RIGHT}}
−
{{#set: common name=polyketide_synthase}}
+
{{#set: common name=peptidoglycan transpeptidase (Gram-negative bacteria)}}
−
{{#set: common name=long_chain_acyl-_synthetase}}
+
{{#set: common name=beta-lactamase}}
−
{{#set: common name=acyl-_synthetase}}
+
{{#set: ec number=EC-3.4.16.4}}
−
{{#set: common name=ORF}}
+
{{#set: gene associated=Tiso_gene_18870}}
−
{{#set: ec number=EC-6.2.1.3}}
+
{{#set: in pathway=}}
−
{{#set: gene associated=Tiso_gene_500|Tiso_gene_348|Tiso_gene_9394|Tiso_gene_135|Tiso_gene_13394|Tiso_gene_136|Tiso_gene_7855|Tiso_gene_10876|Tiso_gene_4191}}
+
−
{{#set: in pathway=PWY-5971}}
+
 
{{#set: reconstruction category=annotation}}
 
{{#set: reconstruction category=annotation}}
−
{{#set: reconstruction source=annotation-experimental_annotation|annotation-in-silico_annotation}}
+
{{#set: reconstruction source=annotation-in-silico_annotation}}
 
{{#set: reconstruction tool=pathwaytools}}
 
{{#set: reconstruction tool=pathwaytools}}

Revision as of 16:47, 21 March 2018

Reaction RXN-11302

  • direction:
    • LEFT-TO-RIGHT
  • common name:
    • peptidoglycan transpeptidase (Gram-negative bacteria)
    • beta-lactamase
  • ec number:
  • Synonym(s):

Reaction Formula

  • With identifiers:
  • With common name(s):
    • 2 a peptidoglycan dimer (meso-diaminopimelate containing)[c] => 1 D-alanine[c] + 1 a peptidoglycan with D,D cross-links (meso-diaminopimelate containing)[c]

Genes associated with this reaction

Genes have been associated with this reaction based on different elements listed below.

Pathways

Reconstruction information

External links

Retrieved from "http://gem-aureme.irisa.fr/tisogem/index.php?title=ACP&oldid=36285"