Difference between revisions of "ARGSUCCINSYN-RXN"

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(Created page with "Category:Gene == Gene Tiso_gene_5939 == * left end position: ** 9686 * transcription direction: ** NEGATIVE * right end position: ** 12287 * centisome position: ** 76.0342...")
(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=ARGSUCCINSYN-RXN ARGSUCCINSYN-RXN] == * direction: ** LEFT-TO-RIGHT * common name: ** argininosucci...")
 
(One intermediate revision by the same user not shown)
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[[Category:Gene]]
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[[Category:Reaction]]
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== Gene Tiso_gene_5939 ==
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== Reaction [http://metacyc.org/META/NEW-IMAGE?object=ARGSUCCINSYN-RXN ARGSUCCINSYN-RXN] ==
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* left end position:
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* direction:
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** 9686
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** LEFT-TO-RIGHT
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* transcription direction:
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* common name:
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** NEGATIVE
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** argininosuccinate_synthase
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* right end position:
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* ec number:
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** 12287
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** [http://enzyme.expasy.org/EC/6.3.4.5 EC-6.3.4.5]
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* centisome position:
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** 76.034225   
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* Synonym(s):
 
* Synonym(s):
  
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== Reactions associated ==
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== Reaction Formula ==
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* [[2.3.1.41-RXN]]
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* With identifiers:
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** in-silico_annotation
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** 1 [[L-CITRULLINE]][c] '''+''' 1 [[ATP]][c] '''+''' 1 [[L-ASPARTATE]][c] '''=>''' 1 [[PROTON]][c] '''+''' 1 [[AMP]][c] '''+''' 1 [[PPI]][c] '''+''' 1 [[L-ARGININO-SUCCINATE]][c]
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***ec-number
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* With common name(s):
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** experimental_annotation
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** 1 L-citrulline[c] '''+''' 1 ATP[c] '''+''' 1 L-aspartate[c] '''=>''' 1 H+[c] '''+''' 1 AMP[c] '''+''' 1 diphosphate[c] '''+''' 1 L-arginino-succinate[c]
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***ec-number
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* [[3-OXOACYL-ACP-SYNTH-BASE-RXN]]
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== Genes associated with this reaction  ==
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** in-silico_annotation
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Genes have been associated with this reaction based on different elements listed below.
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***ec-number
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* Gene: [[Tiso_gene_12592]]
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** experimental_annotation
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** Source: [[annotation-in-silico_annotation]]
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***ec-number
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*** Assignment: EC-NUMBER
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* [[3-OXOACYL-ACP-SYNTH-RXN]]
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** Source: [[annotation-experimental_annotation]]
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** in-silico_annotation
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*** Assignment: EC-NUMBER
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***ec-number
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** Source: [[orthology-athaliana]]
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** experimental_annotation
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** Source: [[orthology-synechocystis]]
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***ec-number
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** Source: [[orthology-esiliculosus]]
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* [[RXN-10059]]
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** Source: [[orthology-creinhardtii]]
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** in-silico_annotation
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== Pathways  ==
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***ec-number
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* [[PWY-4984]], urea cycle: [http://metacyc.org/META/NEW-IMAGE?object=PWY-4984 PWY-4984]
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** experimental_annotation
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** '''5''' reactions found over '''5''' reactions in the full pathway
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***ec-number
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* [[ARGSYN-PWY]], L-arginine biosynthesis I (via L-ornithine): [http://metacyc.org/META/NEW-IMAGE?object=ARGSYN-PWY ARGSYN-PWY]
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* [[RXN-10654]]
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** '''5''' reactions found over '''6''' reactions in the full pathway
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** in-silico_annotation
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* [[PWY-5154]], L-arginine biosynthesis III (via N-acetyl-L-citrulline): [http://metacyc.org/META/NEW-IMAGE?object=PWY-5154 PWY-5154]
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***ec-number
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** '''7''' reactions found over '''9''' reactions in the full pathway
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** experimental_annotation
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* [[ARGSYNBSUB-PWY]], L-arginine biosynthesis II (acetyl cycle): [http://metacyc.org/META/NEW-IMAGE?object=ARGSYNBSUB-PWY ARGSYNBSUB-PWY]
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***ec-number
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** '''9''' reactions found over '''9''' reactions in the full pathway
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* [[RXN-10658]]
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* [[PWY-4983]], L-citrulline-nitric oxide cycle: [http://metacyc.org/META/NEW-IMAGE?object=PWY-4983 PWY-4983]
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** in-silico_annotation
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** '''2''' reactions found over '''3''' reactions in the full pathway
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***ec-number
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* [[PWY-7400]], L-arginine biosynthesis IV (archaebacteria): [http://metacyc.org/META/NEW-IMAGE?object=PWY-7400 PWY-7400]
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** experimental_annotation
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** '''7''' reactions found over '''9''' reactions in the full pathway
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***ec-number
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== Reconstruction information  ==
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* [[RXN-11474]]
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* Category: [[orthology]]
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** in-silico_annotation
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** Source: [[orthology-athaliana]]
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***ec-number
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*** Tool: [[pantograph]]
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** experimental_annotation
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** Source: [[orthology-creinhardtii]]
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***ec-number
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*** Tool: [[pantograph]]
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* [[RXN-11479]]
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** Source: [[orthology-synechocystis]]
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** in-silico_annotation
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*** Tool: [[pantograph]]
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***ec-number
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** Source: [[orthology-esiliculosus]]
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** experimental_annotation
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*** Tool: [[pantograph]]
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***ec-number
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* Category: [[manual]]
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* [[RXN-16615]]
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** Source: [[manual-primary_network]]
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** in-silico_annotation
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* Category: [[annotation]]
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***ec-number
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** Source: [[annotation-in-silico_annotation]]
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** experimental_annotation
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*** Tool: [[pathwaytools]]
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***ec-number
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** Source: [[annotation-experimental_annotation]]
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* [[RXN-16621]]
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*** Tool: [[pathwaytools]]
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** in-silico_annotation
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***ec-number
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** experimental_annotation
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***ec-number
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* [[RXN-16625]]
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** in-silico_annotation
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***ec-number
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** experimental_annotation
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***ec-number
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* [[RXN-16629]]
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** in-silico_annotation
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***ec-number
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** experimental_annotation
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***ec-number
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* [[RXN-9516]]
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** in-silico_annotation
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***ec-number
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** experimental_annotation
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***ec-number
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* [[RXN-9523]]
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** in-silico_annotation
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***ec-number
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** experimental_annotation
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***ec-number
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* [[RXN-9527]]
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** in-silico_annotation
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***ec-number
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** experimental_annotation
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***ec-number
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* [[RXN-9531]]
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** in-silico_annotation
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***ec-number
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** experimental_annotation
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***ec-number
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* [[RXN-9535]]
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** in-silico_annotation
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***ec-number
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** experimental_annotation
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***ec-number
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* [[RXN-9539]]
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** in-silico_annotation
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***ec-number
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** experimental_annotation
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***ec-number
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* [[RXN-9632]]
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** in-silico_annotation
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***ec-number
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** experimental_annotation
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***ec-number
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* [[RXN-9648]]
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** in-silico_annotation
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***ec-number
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** experimental_annotation
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***ec-number
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* [[RXN-9650]]
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** in-silico_annotation
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***ec-number
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** experimental_annotation
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***ec-number
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* [[RXN-9651]]
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** in-silico_annotation
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***ec-number
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** experimental_annotation
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***ec-number
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* [[RXN-9652]]
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** in-silico_annotation
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***ec-number
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** experimental_annotation
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***ec-number
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* [[RXN-9653]]
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** in-silico_annotation
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***ec-number
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** experimental_annotation
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***ec-number
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* [[RXN-9654]]
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** in-silico_annotation
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***ec-number
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** experimental_annotation
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***ec-number
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* [[RXN0-2141]]
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** in-silico_annotation
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***ec-number
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** experimental_annotation
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***ec-number
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* [[RXN1G-368]]
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** in-silico_annotation
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***ec-number
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** experimental_annotation
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***ec-number
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* [[RXN1G-445]]
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** in-silico_annotation
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***ec-number
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** experimental_annotation
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***ec-number
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* [[RXN1G-460]]
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** in-silico_annotation
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***ec-number
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** experimental_annotation
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***ec-number
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* [[RXN1G-499]]
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** in-silico_annotation
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***ec-number
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** experimental_annotation
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***ec-number
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* [[RXN3O-1803]]
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** in-silico_annotation
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***ec-number
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** experimental_annotation
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***ec-number
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== Pathways associated ==
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−
* [[PWY-6113]]
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* [[FASYN-ELONG-PWY]]
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−
* [[PWY-6519]]
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* [[PWY-7388]]
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* [[PWY-5994]]
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* [[PWY-5971]]
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−
* [[PWY-6282]]
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−
* [[PWY-5965]]
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−
* [[PWY-5989]]
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−
* [[PWY-5966]]
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−
* [[PWYG-321]]
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−
* [[FASYN-INITIAL-PWY]]
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−
* [[PWY-7663]]
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−
* [[PWY-7664]]
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−
* [[PWY3O-355]]
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−
* [[PWY0-862]]
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== External links  ==
 
== External links  ==
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{{#set: left end position=9686}}
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* RHEA:
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{{#set: transcription direction=NEGATIVE}}
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** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=10932 10932]
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{{#set: right end position=12287}}
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* LIGAND-RXN:
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{{#set: centisome position=76.034225    }}
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** [http://www.genome.jp/dbget-bin/www_bget?R01954 R01954]
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{{#set: reaction associated=2.3.1.41-RXN|3-OXOACYL-ACP-SYNTH-BASE-RXN|3-OXOACYL-ACP-SYNTH-RXN|RXN-10059|RXN-10654|RXN-10658|RXN-11474|RXN-11479|RXN-16615|RXN-16621|RXN-16625|RXN-16629|RXN-9516|RXN-9523|RXN-9527|RXN-9531|RXN-9535|RXN-9539|RXN-9632|RXN-9648|RXN-9650|RXN-9651|RXN-9652|RXN-9653|RXN-9654|RXN0-2141|RXN1G-368|RXN1G-445|RXN1G-460|RXN1G-499|RXN3O-1803}}
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* UNIPROT:
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{{#set: pathway associated=PWY-6113|FASYN-ELONG-PWY|PWY-6519|PWY-7388|PWY-5994|PWY-5971|PWY-6282|PWY-5965|PWY-5989|PWY-5966|PWYG-321|FASYN-INITIAL-PWY|PWY-7663|PWY-7664|PWY3O-355|PWY0-862}}
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** [http://www.uniprot.org/uniprot/P22768 P22768]
 +
** [http://www.uniprot.org/uniprot/P0A6E4 P0A6E4]
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** [http://www.uniprot.org/uniprot/P00966 P00966]
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** [http://www.uniprot.org/uniprot/P16460 P16460]
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** [http://www.uniprot.org/uniprot/P13256 P13256]
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** [http://www.uniprot.org/uniprot/P13257 P13257]
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** [http://www.uniprot.org/uniprot/P09034 P09034]
 +
** [http://www.uniprot.org/uniprot/P24532 P24532]
 +
** [http://www.uniprot.org/uniprot/Q9PHK7 Q9PHK7]
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** [http://www.uniprot.org/uniprot/P57799 P57799]
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** [http://www.uniprot.org/uniprot/Q60174 Q60174]
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** [http://www.uniprot.org/uniprot/P44315 P44315]
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** [http://www.uniprot.org/uniprot/Q9JWM1 Q9JWM1]
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** [http://www.uniprot.org/uniprot/P50986 P50986]
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** [http://www.uniprot.org/uniprot/Q06734 Q06734]
 +
** [http://www.uniprot.org/uniprot/P0C1A1 P0C1A1]
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** [http://www.uniprot.org/uniprot/Q59491 Q59491]
 +
{{#set: direction=LEFT-TO-RIGHT}}
 +
{{#set: common name=argininosuccinate_synthase}}
 +
{{#set: ec number=EC-6.3.4.5}}
 +
{{#set: gene associated=Tiso_gene_12592}}
 +
{{#set: in pathway=PWY-4984|ARGSYN-PWY|PWY-5154|ARGSYNBSUB-PWY|PWY-4983|PWY-7400}}
 +
{{#set: reconstruction category=orthology|manual|annotation}}
 +
{{#set: reconstruction source=annotation-experimental_annotation|orthology-esiliculosus|annotation-in-silico_annotation|orthology-athaliana|orthology-synechocystis|manual-primary_network|orthology-creinhardtii}}
 +
{{#set: reconstruction tool=pantograph|pathwaytools}}

Latest revision as of 21:02, 21 March 2018

Reaction ARGSUCCINSYN-RXN

  • direction:
    • LEFT-TO-RIGHT
  • common name:
    • argininosuccinate_synthase
  • ec number:
  • Synonym(s):

Reaction Formula

Genes associated with this reaction

Genes have been associated with this reaction based on different elements listed below.

Pathways

  • PWY-4984, urea cycle: PWY-4984
    • 5 reactions found over 5 reactions in the full pathway
  • ARGSYN-PWY, L-arginine biosynthesis I (via L-ornithine): ARGSYN-PWY
    • 5 reactions found over 6 reactions in the full pathway
  • PWY-5154, L-arginine biosynthesis III (via N-acetyl-L-citrulline): PWY-5154
    • 7 reactions found over 9 reactions in the full pathway
  • ARGSYNBSUB-PWY, L-arginine biosynthesis II (acetyl cycle): ARGSYNBSUB-PWY
    • 9 reactions found over 9 reactions in the full pathway
  • PWY-4983, L-citrulline-nitric oxide cycle: PWY-4983
    • 2 reactions found over 3 reactions in the full pathway
  • PWY-7400, L-arginine biosynthesis IV (archaebacteria): PWY-7400
    • 7 reactions found over 9 reactions in the full pathway

Reconstruction information

External links





Retrieved from "http://gem-aureme.irisa.fr/tisogem/index.php?title=ARGSUCCINSYN-RXN&oldid=45432"