Difference between revisions of "ARGSYNBSUB-PWY"

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(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=2.4.1.151-RXN 2.4.1.151-RXN] == * direction: ** LEFT-TO-RIGHT * ec number: ** [http://enzyme.expasy...")
(Created page with "Category:Pathway == Pathway [http://metacyc.org/META/NEW-IMAGE?object=PWY-6558 PWY-6558] == * taxonomic range: ** [http://metacyc.org/META/NEW-IMAGE?object=TAX-33208 TAX-3...")
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[[Category:Reaction]]
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[[Category:Pathway]]
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== Reaction [http://metacyc.org/META/NEW-IMAGE?object=2.4.1.151-RXN 2.4.1.151-RXN] ==
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== Pathway [http://metacyc.org/META/NEW-IMAGE?object=PWY-6558 PWY-6558] ==
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* direction:
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* taxonomic range:
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** LEFT-TO-RIGHT
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** [http://metacyc.org/META/NEW-IMAGE?object=TAX-33208 TAX-33208]
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* ec number:
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* common name:
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** [http://enzyme.expasy.org/EC/2.4.1.87 EC-2.4.1.87]
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** heparan sulfate biosynthesis (late stages)
 
* Synonym(s):
 
* Synonym(s):
  
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== Reaction Formula ==
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== Reaction(s) found ==
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* With identifiers:
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'''3''' reactions found over '''13''' reactions in the full pathway
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** 1 [[B-Gal-14-NacGlc-R]][c] '''+''' 1 [[CPD-14553]][c] '''=>''' 1 [[PROTON]][c] '''+''' 1 [[ALPHA-D-GALACTOSYL-ETCETERA-GLUCOSAMINYL]][c] '''+''' 1 [[UDP]][c]
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* [[2.4.1.223-RXN]]
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* With common name(s):
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** 3 associated gene(s):
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** 1 a type 2 histo-blood group antigen precursor disaccharide[c] '''+''' 1 UDP-α-D-galactose[c] '''=>''' 1 H+[c] '''+''' 1 an α-D-galactosyl-(1,3)-β-D-galactosyl-(1,4)-N-acetyl-D-glucosaminyl-R[c] '''+''' 1 UDP[c]
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*** [[Tiso_gene_10445]]
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*** [[Tiso_gene_8143]]
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== Genes associated with this reaction  ==
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*** [[Tiso_gene_4321]]
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Genes have been associated with this reaction based on different elements listed below.
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** 1 reconstruction source(s) associated:
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* [[Tiso_gene_13589]]
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*** [[orthology-esiliculosus]]
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** [[pantograph]]-[[esiliculosus]]
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* [[2.4.1.224-RXN]]
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== Pathways  ==
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** 2 associated gene(s):
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* [[PWY-7434]], terminal O-glycans residues modification (via type 2 precursor disaccharide): [http://metacyc.org/META/NEW-IMAGE?object=PWY-7434 PWY-7434]
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*** [[Tiso_gene_6495]]
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** '''1''' reactions found over '''11''' reactions in the full pathway
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*** [[Tiso_gene_6496]]
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== Reconstruction information  ==
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** 1 reconstruction source(s) associated:
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* [[orthology]]:
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*** [[annotation-in-silico_annotation]]
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** [[pantograph]]:
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* [[2.4.1.225-RXN]]
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*** [[esiliculosus]]
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** 1 associated gene(s):
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*** [[Tiso_gene_6495]]
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** 1 reconstruction source(s) associated:
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*** [[annotation-in-silico_annotation]]
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== Reaction(s) not found ==
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* [http://metacyc.org/META/NEW-IMAGE?object=2.8.2.23-RXN 2.8.2.23-RXN]
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* [http://metacyc.org/META/NEW-IMAGE?object=2.8.2.29-RXN 2.8.2.29-RXN]
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* [http://metacyc.org/META/NEW-IMAGE?object=2.8.2.30-RXN 2.8.2.30-RXN]
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* [http://metacyc.org/META/NEW-IMAGE?object=5.1.3.17-RXN 5.1.3.17-RXN]
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* [http://metacyc.org/META/NEW-IMAGE?object=HEPARITIN-SULFOTRANSFERASE-RXN HEPARITIN-SULFOTRANSFERASE-RXN]
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* [http://metacyc.org/META/NEW-IMAGE?object=RXN-11557 RXN-11557]
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* [http://metacyc.org/META/NEW-IMAGE?object=RXN-11558 RXN-11558]
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* [http://metacyc.org/META/NEW-IMAGE?object=RXN-11562 RXN-11562]
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* [http://metacyc.org/META/NEW-IMAGE?object=RXN-11563 RXN-11563]
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* [http://metacyc.org/META/NEW-IMAGE?object=RXN-16327 RXN-16327]
 
== External links  ==
 
== External links  ==
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* RHEA:
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{{#set: taxonomic range=TAX-33208}}
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** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=13013 13013]
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{{#set: common name=heparan sulfate biosynthesis (late stages)}}
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* LIGAND-RXN:
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{{#set: reaction found=3}}
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** [http://www.genome.jp/dbget-bin/www_bget?R02791 R02791]
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{{#set: total reaction=13}}
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* UNIPROT:
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{{#set: completion rate=23.0}}
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** [http://www.uniprot.org/uniprot/Q28855 Q28855]
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{{#set: direction=LEFT-TO-RIGHT}}
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{{#set: ec number=EC-2.4.1.87}}
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{{#set: gene associated=Tiso_gene_13589}}
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{{#set: in pathway=PWY-7434}}
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{{#set: reconstruction category=orthology}}
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{{#set: reconstruction tool=pantograph}}
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{{#set: reconstruction source=esiliculosus}}
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Revision as of 19:07, 18 March 2018

Pathway PWY-6558

  • taxonomic range:
  • common name:
    • heparan sulfate biosynthesis (late stages)
  • Synonym(s):

Reaction(s) found

3 reactions found over 13 reactions in the full pathway

Reaction(s) not found

External links

Retrieved from "http://gem-aureme.irisa.fr/tisogem/index.php?title=ARGSYNBSUB-PWY&oldid=22045"