Difference between revisions of "ASPARAGHYD-RXN"

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(Created page with "Category:Pathway == Pathway [http://metacyc.org/META/NEW-IMAGE?object=PWY-6519 PWY-6519] == * taxonomic range: ** [http://metacyc.org/META/NEW-IMAGE?object=TAX-2 TAX-2] *...")
(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=ASPARAGHYD-RXN ASPARAGHYD-RXN] == * direction: ** LEFT-TO-RIGHT * common name: ** asparaginase * ec...")
 
(One intermediate revision by the same user not shown)
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[[Category:Pathway]]
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[[Category:Reaction]]
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== Pathway [http://metacyc.org/META/NEW-IMAGE?object=PWY-6519 PWY-6519] ==
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== Reaction [http://metacyc.org/META/NEW-IMAGE?object=ASPARAGHYD-RXN ASPARAGHYD-RXN] ==
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* taxonomic range:
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* direction:
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** [http://metacyc.org/META/NEW-IMAGE?object=TAX-2 TAX-2]
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** LEFT-TO-RIGHT
 
* common name:
 
* common name:
−
** 8-amino-7-oxononanoate biosynthesis I
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** asparaginase
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* ec number:
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** [http://enzyme.expasy.org/EC/3.5.1.38 EC-3.5.1.38]
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** [http://enzyme.expasy.org/EC/3.5.1.1 EC-3.5.1.1]
 
* Synonym(s):
 
* Synonym(s):
−
** 7-keto-8-aminopelargonate biosynthesis I
 
  
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== Reaction(s) found ==
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== Reaction Formula ==
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'''9''' reactions found over '''11''' reactions in the full pathway
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* With identifiers:
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* [[RXN-11474]]
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** 1 [[ASN]][c] '''+''' 1 [[WATER]][c] '''=>''' 1 [[AMMONIUM]][c] '''+''' 1 [[L-ASPARTATE]][c]
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** 4 associated gene(s):
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* With common name(s):
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*** [[Tiso_gene_19302]]
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** 1 L-asparagine[c] '''+''' 1 H2O[c] '''=>''' 1 ammonium[c] '''+''' 1 L-aspartate[c]
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*** [[Tiso_gene_15991]]
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*** [[Tiso_gene_5939]]
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== Genes associated with this reaction  ==
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*** [[Tiso_gene_14485]]
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Genes have been associated with this reaction based on different elements listed below.
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** 3 reconstruction source(s) associated:
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* Gene: [[Tiso_gene_19398]]
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*** [[annotation-in-silico_annotation]]
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** Source: [[annotation-in-silico_annotation]]
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*** [[annotation-experimental_annotation]]
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*** Assignment: AUTOMATED-NAME-MATCH
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*** [[orthology-esiliculosus]]
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** Source: [[orthology-synechocystis]]
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* [[RXN-11476]]
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** Source: [[orthology-esiliculosus]]
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** 2 associated gene(s):
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* Gene: [[Tiso_gene_17477]]
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*** [[Tiso_gene_13083]]
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** Source: [[orthology-esiliculosus]]
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*** [[Tiso_gene_9885]]
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** Source: [[orthology-creinhardtii]]
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** 3 reconstruction source(s) associated:
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* Gene: [[Tiso_gene_3570]]
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*** [[annotation-experimental_annotation]]
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** Source: [[orthology-esiliculosus]]
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*** [[annotation-in-silico_annotation]]
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** Source: [[orthology-creinhardtii]]
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*** [[orthology-esiliculosus]]
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== Pathways  ==
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* [[RXN-11477]]
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* [[ASPARAGINE-DEG1-PWY]], L-asparagine degradation I: [http://metacyc.org/META/NEW-IMAGE?object=ASPARAGINE-DEG1-PWY ASPARAGINE-DEG1-PWY]
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** 2 associated gene(s):
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** '''1''' reactions found over '''1''' reactions in the full pathway
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*** [[Tiso_gene_6884]]
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* [[ASPASN-PWY]], superpathway of L-aspartate and L-asparagine biosynthesis: [http://metacyc.org/META/NEW-IMAGE?object=ASPASN-PWY ASPASN-PWY]
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*** [[Tiso_gene_6885]]
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** '''4''' reactions found over '''7''' reactions in the full pathway
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** 2 reconstruction source(s) associated:
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* [[ASPARAGINE-DEG1-PWY-1]], L-asparagine degradation III (mammalian): [http://metacyc.org/META/NEW-IMAGE?object=ASPARAGINE-DEG1-PWY-1 ASPARAGINE-DEG1-PWY-1]
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*** [[annotation-experimental_annotation]]
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** '''2''' reactions found over '''3''' reactions in the full pathway
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*** [[orthology-creinhardtii]]
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== Reconstruction information  ==
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* [[RXN-11478]]
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* Category: [[orthology]]
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** 1 associated gene(s):
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** Source: [[orthology-creinhardtii]]
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*** [[Tiso_gene_10778]]
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*** Tool: [[pantograph]]
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** 1 reconstruction source(s) associated:
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** Source: [[orthology-synechocystis]]
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*** [[orthology-esiliculosus]]
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*** Tool: [[pantograph]]
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* [[RXN-11479]]
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** Source: [[orthology-esiliculosus]]
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** 4 associated gene(s):
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*** Tool: [[pantograph]]
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*** [[Tiso_gene_5939]]
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* Category: [[annotation]]
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*** [[Tiso_gene_14485]]
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** Source: [[annotation-in-silico_annotation]]
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*** [[Tiso_gene_19302]]
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*** Tool: [[pathwaytools]]
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*** [[Tiso_gene_15991]]
+
−
** 3 reconstruction source(s) associated:
+
−
*** [[annotation-in-silico_annotation]]
+
−
*** [[annotation-experimental_annotation]]
+
−
*** [[orthology-esiliculosus]]
+
−
* [[RXN-11480]]
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−
** 2 associated gene(s):
+
−
*** [[Tiso_gene_9885]]
+
−
*** [[Tiso_gene_13083]]
+
−
** 3 reconstruction source(s) associated:
+
−
*** [[annotation-in-silico_annotation]]
+
−
*** [[annotation-experimental_annotation]]
+
−
*** [[orthology-esiliculosus]]
+
−
* [[RXN-11481]]
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−
** 2 associated gene(s):
+
−
*** [[Tiso_gene_6884]]
+
−
*** [[Tiso_gene_6885]]
+
−
** 2 reconstruction source(s) associated:
+
−
*** [[annotation-experimental_annotation]]
+
−
*** [[orthology-creinhardtii]]
+
−
* [[RXN-11482]]
+
−
** 1 associated gene(s):
+
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*** [[Tiso_gene_10778]]
+
−
** 1 reconstruction source(s) associated:
+
−
*** [[orthology-esiliculosus]]
+
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* [[RXN-11484]]
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** 1 associated gene(s):
+
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*** [[Tiso_gene_3555]]
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−
** 2 reconstruction source(s) associated:
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*** [[orthology-creinhardtii]]
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−
*** [[orthology-esiliculosus]]
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−
== Reaction(s) not found ==
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* [http://metacyc.org/META/NEW-IMAGE?object=RXN-11475 RXN-11475]
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* [http://metacyc.org/META/NEW-IMAGE?object=RXN-11483 RXN-11483]
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== External links  ==
 
== External links  ==
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* ECOCYC:
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* RHEA:
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** [http://metacyc.org/ECOLI/NEW-IMAGE?object=PWY-6519 PWY-6519]
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** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=21016 21016]
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{{#set: taxonomic range=TAX-2}}
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* LIGAND-RXN:
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{{#set: common name=8-amino-7-oxononanoate biosynthesis I}}
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** [http://www.genome.jp/dbget-bin/www_bget?R00485 R00485]
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{{#set: common name=7-keto-8-aminopelargonate biosynthesis I}}
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* UNIPROT:
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{{#set: reaction found=9}}
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** [http://www.uniprot.org/uniprot/P06608 P06608]
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{{#set: total reaction=11}}
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** [http://www.uniprot.org/uniprot/P26900 P26900]
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{{#set: completion rate=82.0}}
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** [http://www.uniprot.org/uniprot/P43843 P43843]
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** [http://www.uniprot.org/uniprot/Q9V262 Q9V262]
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** [http://www.uniprot.org/uniprot/Q9JT73 Q9JT73]
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** [http://www.uniprot.org/uniprot/O25424 O25424]
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** [http://www.uniprot.org/uniprot/P37595 P37595]
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** [http://www.uniprot.org/uniprot/Q9ZLB9 Q9ZLB9]
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** [http://www.uniprot.org/uniprot/O34482 O34482]
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** [http://www.uniprot.org/uniprot/Q9V2K1 Q9V2K1]
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** [http://www.uniprot.org/uniprot/O57797 O57797]
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** [http://www.uniprot.org/uniprot/Q9PJ82 Q9PJ82]
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** [http://www.uniprot.org/uniprot/P30363 P30363]
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** [http://www.uniprot.org/uniprot/P30362 P30362]
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** [http://www.uniprot.org/uniprot/P30364 P30364]
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** [http://www.uniprot.org/uniprot/P38986 P38986]
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** [http://www.uniprot.org/uniprot/P50287 P50287]
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** [http://www.uniprot.org/uniprot/P11163 P11163]
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** [http://www.uniprot.org/uniprot/P50286 P50286]
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** [http://www.uniprot.org/uniprot/P87015 P87015]
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** [http://www.uniprot.org/uniprot/Q9UTS7 Q9UTS7]
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** [http://www.uniprot.org/uniprot/P00805 P00805]
 +
** [http://www.uniprot.org/uniprot/P0A962 P0A962]
 +
{{#set: direction=LEFT-TO-RIGHT}}
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{{#set: common name=asparaginase}}
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{{#set: ec number=EC-3.5.1.38}}
 +
{{#set: ec number=EC-3.5.1.1}}
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{{#set: gene associated=Tiso_gene_19398|Tiso_gene_17477|Tiso_gene_3570}}
 +
{{#set: in pathway=ASPARAGINE-DEG1-PWY|ASPASN-PWY|ASPARAGINE-DEG1-PWY-1}}
 +
{{#set: reconstruction category=orthology|annotation}}
 +
{{#set: reconstruction source=annotation-in-silico_annotation|orthology-creinhardtii|orthology-synechocystis|orthology-esiliculosus}}
 +
{{#set: reconstruction tool=pantograph|pathwaytools}}

Latest revision as of 20:39, 21 March 2018

Reaction ASPARAGHYD-RXN

Reaction Formula

  • With identifiers:
  • With common name(s):
    • 1 L-asparagine[c] + 1 H2O[c] => 1 ammonium[c] + 1 L-aspartate[c]

Genes associated with this reaction

Genes have been associated with this reaction based on different elements listed below.

Pathways

Reconstruction information

External links





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