Difference between revisions of "Annotation"
From metabolic_network
(Created page with "{{#ask: Category:Reaction reconstruction category::annotation | ?common name | ?ec number | ?reconstruction category | ?reconstruction tool | ?reconstruction source |...") |
(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-17875 RXN-17875] == * direction: ** LEFT-TO-RIGHT * common name: ** methionine_aminopeptidase *...") |
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| − | + | [[Category:Reaction]] | |
| − | + | == Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-17875 RXN-17875] == | |
| − | + | * direction: | |
| − | | | + | ** LEFT-TO-RIGHT |
| − | + | * common name: | |
| − | + | ** methionine_aminopeptidase | |
| − | | | + | * ec number: |
| − | + | ** [http://enzyme.expasy.org/EC/3.4.11.18 EC-3.4.11.18] | |
| − | }} | + | * Synonym(s): |
| + | |||
| + | == Reaction Formula == | ||
| + | * With identifiers: | ||
| + | ** 1 [[WATER]][c] '''+''' 1 [[L-methionyl-glycyl-Protein]][c] '''=>''' 1 [[MET]][c] '''+''' 1 [[N-terminal-glycine]][c] | ||
| + | * With common name(s): | ||
| + | ** 1 H2O[c] '''+''' 1 an N-terminal-L-methionyl-glycyl-[protein][c] '''=>''' 1 L-methionine[c] '''+''' 1 an N-terminal glycyl-[protein][c] | ||
| + | |||
| + | == Genes associated with this reaction == | ||
| + | Genes have been associated with this reaction based on different elements listed below. | ||
| + | * [[Tiso_gene_4247]] | ||
| + | ** IN-SILICO_ANNOTATION | ||
| + | ***AUTOMATED-NAME-MATCH | ||
| + | * [[Tiso_gene_5715]] | ||
| + | ** IN-SILICO_ANNOTATION | ||
| + | ***AUTOMATED-NAME-MATCH | ||
| + | ** EXPERIMENTAL_ANNOTATION | ||
| + | ***AUTOMATED-NAME-MATCH | ||
| + | == Pathways == | ||
| + | * [[PWY-7800]], Ac/N-end rule pathway: [http://metacyc.org/META/NEW-IMAGE?object=PWY-7800 PWY-7800] | ||
| + | ** '''21''' reactions found over '''21''' reactions in the full pathway | ||
| + | == Reconstruction information == | ||
| + | * [[annotation]]: | ||
| + | ** [[pathwaytools]]: | ||
| + | *** [[experimental_annotation]] | ||
| + | *** [[in-silico_annotation]] | ||
| + | == External links == | ||
| + | {{#set: direction=LEFT-TO-RIGHT}} | ||
| + | {{#set: common name=methionine_aminopeptidase}} | ||
| + | {{#set: ec number=EC-3.4.11.18}} | ||
| + | {{#set: gene associated=Tiso_gene_4247|Tiso_gene_5715}} | ||
| + | {{#set: in pathway=PWY-7800}} | ||
| + | {{#set: reconstruction category=annotation}} | ||
| + | {{#set: reconstruction tool=pathwaytools}} | ||
| + | {{#set: reconstruction source=experimental_annotation|in-silico_annotation}} | ||
Revision as of 18:40, 10 January 2018
Contents
Reaction RXN-17875
- direction:
- LEFT-TO-RIGHT
- common name:
- methionine_aminopeptidase
- ec number:
- Synonym(s):
Reaction Formula
- With identifiers:
- 1 WATER[c] + 1 L-methionyl-glycyl-Protein[c] => 1 MET[c] + 1 N-terminal-glycine[c]
- With common name(s):
- 1 H2O[c] + 1 an N-terminal-L-methionyl-glycyl-[protein][c] => 1 L-methionine[c] + 1 an N-terminal glycyl-[protein][c]
Genes associated with this reaction
Genes have been associated with this reaction based on different elements listed below.
- Tiso_gene_4247
- IN-SILICO_ANNOTATION
- AUTOMATED-NAME-MATCH
- IN-SILICO_ANNOTATION
- Tiso_gene_5715
- IN-SILICO_ANNOTATION
- AUTOMATED-NAME-MATCH
- EXPERIMENTAL_ANNOTATION
- AUTOMATED-NAME-MATCH
- IN-SILICO_ANNOTATION
Pathways
Reconstruction information
- annotation:
