Difference between revisions of "Annotation"

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(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-17875 RXN-17875] == * direction: ** LEFT-TO-RIGHT * common name: ** methionine_aminopeptidase *...")
(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=NTPD NTPD] == * direction: ** LEFT-TO-RIGHT * common name: ** nucleoside-triphosphate diphosphatase...")
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[[Category:Reaction]]
 
[[Category:Reaction]]
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== Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-17875 RXN-17875] ==
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== Reaction [http://metacyc.org/META/NEW-IMAGE?object=NTPD NTPD] ==
 
* direction:
 
* direction:
 
** LEFT-TO-RIGHT
 
** LEFT-TO-RIGHT
 
* common name:
 
* common name:
−
** methionine_aminopeptidase
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** nucleoside-triphosphate diphosphatase (XTP)
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* ec number:
+
−
** [http://enzyme.expasy.org/EC/3.4.11.18 EC-3.4.11.18]
+
 
* Synonym(s):
 
* Synonym(s):
  
 
== Reaction Formula ==
 
== Reaction Formula ==
 
* With identifiers:
 
* With identifiers:
−
** 1 [[WATER]][c] '''+''' 1 [[L-methionyl-glycyl-Protein]][c] '''=>''' 1 [[MET]][c] '''+''' 1 [[N-terminal-glycine]][c]
+
** 1.0 [[XTP]][c] '''+''' 1.0 [[WATER]][c] '''=>''' 1.0 [[XANTHOSINE-5-PHOSPHATE]][c] '''+''' 1.0 [[PPI]][c] '''+''' 1.0 [[PROTON]][c]
 
* With common name(s):
 
* With common name(s):
−
** 1 H2O[c] '''+''' 1 an N-terminal-L-methionyl-glycyl-[protein][c] '''=>''' 1 L-methionine[c] '''+''' 1 an N-terminal glycyl-[protein][c]
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** 1.0 XTP[c] '''+''' 1.0 H2O[c] '''=>''' 1.0 XMP[c] '''+''' 1.0 diphosphate[c] '''+''' 1.0 H+[c]
  
 
== Genes associated with this reaction  ==
 
== Genes associated with this reaction  ==
 
Genes have been associated with this reaction based on different elements listed below.
 
Genes have been associated with this reaction based on different elements listed below.
−
* [[Tiso_gene_4247]]
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* [[Tiso_gene_18793]]
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** IN-SILICO_ANNOTATION
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** [[pantograph]]-[[creinhardtii]]
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***AUTOMATED-NAME-MATCH
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−
* [[Tiso_gene_5715]]
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−
** IN-SILICO_ANNOTATION
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−
***AUTOMATED-NAME-MATCH
+
−
** EXPERIMENTAL_ANNOTATION
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−
***AUTOMATED-NAME-MATCH
+
 
== Pathways  ==
 
== Pathways  ==
−
* [[PWY-7800]], Ac/N-end rule pathway: [http://metacyc.org/META/NEW-IMAGE?object=PWY-7800 PWY-7800]
 
−
** '''21''' reactions found over '''21''' reactions in the full pathway
 
 
== Reconstruction information  ==
 
== Reconstruction information  ==
−
* [[annotation]]:
+
* Category: [[orthology]]
−
** [[pathwaytools]]:
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** Source: [[orthology-creinhardtii]]
−
*** [[experimental_annotation]]
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*** Tool: [[pantograph]]
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*** [[in-silico_annotation]]
+
 
== External links  ==
 
== External links  ==
 
{{#set: direction=LEFT-TO-RIGHT}}
 
{{#set: direction=LEFT-TO-RIGHT}}
−
{{#set: common name=methionine_aminopeptidase}}
+
{{#set: common name=nucleoside-triphosphate diphosphatase (XTP)}}
−
{{#set: ec number=EC-3.4.11.18}}
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{{#set: gene associated=Tiso_gene_18793}}
−
{{#set: gene associated=Tiso_gene_4247|Tiso_gene_5715}}
+
{{#set: in pathway=}}
−
{{#set: in pathway=PWY-7800}}
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{{#set: reconstruction category=orthology}}
−
{{#set: reconstruction category=annotation}}
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{{#set: reconstruction source=orthology-creinhardtii}}
−
{{#set: reconstruction tool=pathwaytools}}
+
{{#set: reconstruction tool=pantograph}}
−
{{#set: reconstruction source=experimental_annotation|in-silico_annotation}}
+

Revision as of 01:18, 19 March 2018

Reaction NTPD

  • direction:
    • LEFT-TO-RIGHT
  • common name:
    • nucleoside-triphosphate diphosphatase (XTP)
  • Synonym(s):

Reaction Formula

  • With identifiers:
  • With common name(s):
    • 1.0 XTP[c] + 1.0 H2O[c] => 1.0 XMP[c] + 1.0 diphosphate[c] + 1.0 H+[c]

Genes associated with this reaction

Genes have been associated with this reaction based on different elements listed below.

Pathways

Reconstruction information

External links

Retrieved from "http://gem-aureme.irisa.fr/tisogem/index.php?title=Annotation&oldid=29675"