Difference between revisions of "Annotation-in-silico annotation"

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(Created page with "* navigation ** mainpage|mainpage-description ** randompage-url|randompage ** Special:ListFiles|Files * Metabolic network components ** Category:Reaction|Reaction ** Category:...")
(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=3.2.1.52-RXN 3.2.1.52-RXN] == * direction: ** LEFT-TO-RIGHT * common name: ** beta-hexosaminidase *...")
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* navigation
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[[Category:Reaction]]
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** mainpage|mainpage-description
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== Reaction [http://metacyc.org/META/NEW-IMAGE?object=3.2.1.52-RXN 3.2.1.52-RXN] ==
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** randompage-url|randompage
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* direction:
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** Special:ListFiles|Files
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** LEFT-TO-RIGHT
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* Metabolic network components
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* common name:
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** Category:Reaction|Reaction
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** beta-hexosaminidase
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** Category:Gene|Gene
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* ec number:
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** Category:Pathway|Pathway
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** [http://enzyme.expasy.org/EC/3.2.1.52 EC-3.2.1.52]
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** Category:Metabolite|Metabolite
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* Synonym(s):
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* Reconstruction categories
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** annotation|annotation
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== Reaction Formula ==
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** gap-filling|gap-filling
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* With identifiers:
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** manual|manual
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** 1 [[N-Acetyl-beta-D-Hexosaminides]][c] '''+''' 1 [[WATER]][c] '''=>''' 1 [[Alcohols]][c] '''+''' 1 [[N-acetyl-beta-D-hexosamines]][c]
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** orthology|orthology
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* With common name(s):
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* Reconstruction tools
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** 1 an N-acetyl-β-D-hexosaminide[c] '''+''' 1 H2O[c] '''=>''' 1 an alcohol[c] '''+''' 1 an N-acetyl-β-D-hexosamine[c]
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** meneco|meneco
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** pantograph|pantograph
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== Genes associated with this reaction  ==
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** pathwaytools|pathwaytools
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Genes have been associated with this reaction based on different elements listed below.
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* Reconstruction sources
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* [[Tiso_gene_1129]]
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** added for gapfilling|added for gapfilling
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** IN-SILICO_ANNOTATION
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** added to manage seeds from boundary to extracellular compartment|added to manage seeds from boundary to extracellular compartment
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***EC-NUMBER
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** added to manage seeds from extracellular to cytosol compartment|added to manage seeds from extracellular to cytosol compartment
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* [[Tiso_gene_14122]]
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** athaliana|athaliana
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** IN-SILICO_ANNOTATION
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** creinhardtii|creinhardtii
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***EC-NUMBER
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** esiliculosus|esiliculosus
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== Pathways  ==
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** experimental_annotation|experimental_annotation
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== Reconstruction information  ==
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** in-silico_annotation|in-silico_annotation
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* Category: [[annotation]]
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** primary_network|primary_network
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** Source: [[annotation-in-silico_annotation]]
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** reaction added to avoid biomass-compositions accumulation|reaction added to avoid biomass-compositions accumulation
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*** Tool: [[pathwaytools]]
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** synechocystis|synechocystis
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== External links  ==
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* UNIPROT:
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** [http://www.uniprot.org/uniprot/P13723 P13723]
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** [http://www.uniprot.org/uniprot/P07686 P07686]
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** [http://www.uniprot.org/uniprot/Q04786 Q04786]
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** [http://www.uniprot.org/uniprot/P06865 P06865]
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** [http://www.uniprot.org/uniprot/P20060 P20060]
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** [http://www.uniprot.org/uniprot/Q9CFI2 Q9CFI2]
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** [http://www.uniprot.org/uniprot/Q9JVT3 Q9JVT3]
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** [http://www.uniprot.org/uniprot/P29416 P29416]
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** [http://www.uniprot.org/uniprot/Q54468 Q54468]
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** [http://www.uniprot.org/uniprot/P39848 P39848]
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{{#set: direction=LEFT-TO-RIGHT}}
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{{#set: common name=beta-hexosaminidase}}
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{{#set: ec number=EC-3.2.1.52}}
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{{#set: gene associated=Tiso_gene_1129|Tiso_gene_14122}}
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{{#set: in pathway=}}
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{{#set: reconstruction category=annotation}}
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{{#set: reconstruction source=annotation-in-silico_annotation}}
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{{#set: reconstruction tool=pathwaytools}}

Revision as of 01:18, 19 March 2018

Reaction 3.2.1.52-RXN

  • direction:
    • LEFT-TO-RIGHT
  • common name:
    • beta-hexosaminidase
  • ec number:
  • Synonym(s):

Reaction Formula

Genes associated with this reaction

Genes have been associated with this reaction based on different elements listed below.

Pathways

Reconstruction information

External links





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