Difference between revisions of "Annotation-in-silico annotation"

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(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=3.2.1.52-RXN 3.2.1.52-RXN] == * direction: ** LEFT-TO-RIGHT * common name: ** beta-hexosaminidase *...")
(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-17875 RXN-17875] == * direction: ** LEFT-TO-RIGHT * common name: ** methionine_aminopeptidase *...")
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[[Category:Reaction]]
 
[[Category:Reaction]]
−
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=3.2.1.52-RXN 3.2.1.52-RXN] ==
+
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-17875 RXN-17875] ==
 
* direction:
 
* direction:
 
** LEFT-TO-RIGHT
 
** LEFT-TO-RIGHT
 
* common name:
 
* common name:
−
** beta-hexosaminidase
+
** methionine_aminopeptidase
 
* ec number:
 
* ec number:
−
** [http://enzyme.expasy.org/EC/3.2.1.52 EC-3.2.1.52]
+
** [http://enzyme.expasy.org/EC/3.4.11.18 EC-3.4.11.18]
 
* Synonym(s):
 
* Synonym(s):
  
 
== Reaction Formula ==
 
== Reaction Formula ==
 
* With identifiers:
 
* With identifiers:
−
** 1 [[N-Acetyl-beta-D-Hexosaminides]][c] '''+''' 1 [[WATER]][c] '''=>''' 1 [[Alcohols]][c] '''+''' 1 [[N-acetyl-beta-D-hexosamines]][c]
+
** 1 [[L-methionyl-glycyl-Protein]][c] '''+''' 1 [[WATER]][c] '''=>''' 1 [[MET]][c] '''+''' 1 [[N-terminal-glycine]][c]
 
* With common name(s):
 
* With common name(s):
−
** 1 an N-acetyl-β-D-hexosaminide[c] '''+''' 1 H2O[c] '''=>''' 1 an alcohol[c] '''+''' 1 an N-acetyl-β-D-hexosamine[c]
+
** 1 an N-terminal-L-methionyl-glycyl-[protein][c] '''+''' 1 H2O[c] '''=>''' 1 L-methionine[c] '''+''' 1 an N-terminal glycyl-[protein][c]
  
 
== Genes associated with this reaction  ==
 
== Genes associated with this reaction  ==
 
Genes have been associated with this reaction based on different elements listed below.
 
Genes have been associated with this reaction based on different elements listed below.
−
* [[Tiso_gene_1129]]
+
* Gene: [[Tiso_gene_4247]]
−
** IN-SILICO_ANNOTATION
+
** Source: [[annotation-in-silico_annotation]]
−
***EC-NUMBER
+
*** Assignment: AUTOMATED-NAME-MATCH
−
* [[Tiso_gene_14122]]
+
* Gene: [[Tiso_gene_5715]]
−
** IN-SILICO_ANNOTATION
+
** Source: [[annotation-in-silico_annotation]]
−
***EC-NUMBER
+
*** Assignment: AUTOMATED-NAME-MATCH
 +
** Source: [[annotation-experimental_annotation]]
 +
*** Assignment: AUTOMATED-NAME-MATCH
 
== Pathways  ==
 
== Pathways  ==
 +
* [[PWY-7800]], Ac/N-end rule pathway: [http://metacyc.org/META/NEW-IMAGE?object=PWY-7800 PWY-7800]
 +
** '''21''' reactions found over '''21''' reactions in the full pathway
 
== Reconstruction information  ==
 
== Reconstruction information  ==
 
* Category: [[annotation]]
 
* Category: [[annotation]]
 
** Source: [[annotation-in-silico_annotation]]
 
** Source: [[annotation-in-silico_annotation]]
 +
*** Tool: [[pathwaytools]]
 +
** Source: [[annotation-experimental_annotation]]
 
*** Tool: [[pathwaytools]]
 
*** Tool: [[pathwaytools]]
 
== External links  ==
 
== External links  ==
−
* UNIPROT:
 
−
** [http://www.uniprot.org/uniprot/P13723 P13723]
 
−
** [http://www.uniprot.org/uniprot/P07686 P07686]
 
−
** [http://www.uniprot.org/uniprot/Q04786 Q04786]
 
−
** [http://www.uniprot.org/uniprot/P06865 P06865]
 
−
** [http://www.uniprot.org/uniprot/P20060 P20060]
 
−
** [http://www.uniprot.org/uniprot/Q9CFI2 Q9CFI2]
 
−
** [http://www.uniprot.org/uniprot/Q9JVT3 Q9JVT3]
 
−
** [http://www.uniprot.org/uniprot/P29416 P29416]
 
−
** [http://www.uniprot.org/uniprot/Q54468 Q54468]
 
−
** [http://www.uniprot.org/uniprot/P39848 P39848]
 
 
{{#set: direction=LEFT-TO-RIGHT}}
 
{{#set: direction=LEFT-TO-RIGHT}}
−
{{#set: common name=beta-hexosaminidase}}
+
{{#set: common name=methionine_aminopeptidase}}
−
{{#set: ec number=EC-3.2.1.52}}
+
{{#set: ec number=EC-3.4.11.18}}
−
{{#set: gene associated=Tiso_gene_1129|Tiso_gene_14122}}
+
{{#set: gene associated=Tiso_gene_4247|Tiso_gene_5715}}
−
{{#set: in pathway=}}
+
{{#set: in pathway=PWY-7800}}
 
{{#set: reconstruction category=annotation}}
 
{{#set: reconstruction category=annotation}}
−
{{#set: reconstruction source=annotation-in-silico_annotation}}
+
{{#set: reconstruction source=annotation-in-silico_annotation|annotation-experimental_annotation}}
 
{{#set: reconstruction tool=pathwaytools}}
 
{{#set: reconstruction tool=pathwaytools}}

Revision as of 17:09, 21 March 2018

Reaction RXN-17875

  • direction:
    • LEFT-TO-RIGHT
  • common name:
    • methionine_aminopeptidase
  • ec number:
  • Synonym(s):

Reaction Formula

Genes associated with this reaction

Genes have been associated with this reaction based on different elements listed below.

Pathways

  • PWY-7800, Ac/N-end rule pathway: PWY-7800
    • 21 reactions found over 21 reactions in the full pathway

Reconstruction information

External links

Retrieved from "http://gem-aureme.irisa.fr/tisogem/index.php?title=Annotation-in-silico_annotation&oldid=39225"