Difference between revisions of "CPD-10337"

From metabolic_network
Jump to: navigation, search
(Created page with "Category:Metabolite == Metabolite [http://metacyc.org/META/NEW-IMAGE?object=3-HYDROXYPIMELYL-COA 3-HYDROXYPIMELYL-COA] == * smiles: ** CC(C)(C(O)C(=O)NCCC(=O)NCCSC(CC(CCCC...")
(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=BADH-RXN BADH-RXN] == * direction: ** REVERSIBLE * ec number: ** [http://enzyme.expasy.org/EC/1.2.1...")
Line 1: Line 1:
−
[[Category:Metabolite]]
+
[[Category:Reaction]]
−
== Metabolite [http://metacyc.org/META/NEW-IMAGE?object=3-HYDROXYPIMELYL-COA 3-HYDROXYPIMELYL-COA] ==
+
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=BADH-RXN BADH-RXN] ==
−
* smiles:
+
* direction:
−
** CC(C)(C(O)C(=O)NCCC(=O)NCCSC(CC(CCCC([O-])=O)O)=O)COP(=O)(OP(=O)(OCC1(C(OP([O-])(=O)[O-])C(O)C(O1)N3(C2(=C(C(N)=NC=N2)N=C3))))[O-])[O-]
+
** REVERSIBLE
−
* inchi key:
+
* ec number:
−
** InChIKey=VGEBXBQECGWCRH-JXUSAFQPSA-I
+
** [http://enzyme.expasy.org/EC/1.2.1.8 EC-1.2.1.8]
−
* common name:
+
−
** 3-hydroxypimeloyl-CoA
+
−
* molecular weight:
+
−
** 920.648   
+
 
* Synonym(s):
 
* Synonym(s):
−
** 3-hydroxypimelyl-CoA
 
−
** 5-hydroxy-7-oxoheptanoyl-CoA
 
−
** 3-hydroxy-6-carboxyhexanoyl-CoA
 
  
−
== Reaction(s) known to consume the compound ==
+
== Reaction Formula ==
−
== Reaction(s) known to produce the compound ==
+
* With identifiers:
−
== Reaction(s) of unknown directionality ==
+
** 1 [[WATER]][c] '''+''' 1 [[BETAINE_ALDEHYDE]][c] '''+''' 1 [[NAD]][c] '''<=>''' 1 [[NADH]][c] '''+''' 1 [[BETAINE]][c] '''+''' 2 [[PROTON]][c]
−
* [[RXN-15013]]
+
* With common name(s):
 +
** 1 H2O[c] '''+''' 1 betaine aldehyde[c] '''+''' 1 NAD+[c] '''<=>''' 1 NADH[c] '''+''' 1 glycine betaine[c] '''+''' 2 H+[c]
 +
 
 +
== Genes associated with this reaction  ==
 +
Genes have been associated with this reaction based on different elements listed below.
 +
* [[Tiso_gene_3513]]
 +
** [[pantograph]]-[[esiliculosus]]
 +
== Pathways  ==
 +
* [[CHOLINE-BETAINE-ANA-PWY]], choline degradation I: [http://metacyc.org/META/NEW-IMAGE?object=CHOLINE-BETAINE-ANA-PWY CHOLINE-BETAINE-ANA-PWY]
 +
** '''2''' reactions found over '''2''' reactions in the full pathway
 +
* [[PWY1F-353]], glycine betaine biosynthesis III (plants): [http://metacyc.org/META/NEW-IMAGE?object=PWY1F-353 PWY1F-353]
 +
** '''2''' reactions found over '''3''' reactions in the full pathway
 +
* [[PWY-7494]], choline degradation IV: [http://metacyc.org/META/NEW-IMAGE?object=PWY-7494 PWY-7494]
 +
** '''2''' reactions found over '''4''' reactions in the full pathway
 +
* [[BETSYN-PWY]], glycine betaine biosynthesis I (Gram-negative bacteria): [http://metacyc.org/META/NEW-IMAGE?object=BETSYN-PWY BETSYN-PWY]
 +
** '''2''' reactions found over '''2''' reactions in the full pathway
 +
* [[PWY-3722]], glycine betaine biosynthesis II (Gram-positive bacteria): [http://metacyc.org/META/NEW-IMAGE?object=PWY-3722 PWY-3722]
 +
** '''1''' reactions found over '''2''' reactions in the full pathway
 +
== Reconstruction information  ==
 +
* Category: [[orthology]]
 +
** Source: [[orthology-esiliculosus]]
 +
*** Tool: [[pantograph]]
 
== External links  ==
 
== External links  ==
−
* PUBCHEM:
+
* RHEA:
−
** [http://pubchem.ncbi.nlm.nih.gov/summary/summary.cgi?cid=45266574 45266574]
+
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=30070 30070]
−
* CHEBI:
+
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=15305 15305]
−
** [http://www.ebi.ac.uk/chebi/searchId.do?chebiId=57343 57343]
+
* LIGAND-RXN:
−
* LIGAND-CPD:
+
** [http://www.genome.jp/dbget-bin/www_bget?R02565 R02565]
−
** [http://www.genome.jp/dbget-bin/www_bget?C06714 C06714]
+
* UNIPROT:
−
* HMDB : HMDB12155
+
** [http://www.uniprot.org/uniprot/P17202 P17202]
−
{{#set: smiles=CC(C)(C(O)C(=O)NCCC(=O)NCCSC(CC(CCCC([O-])=O)O)=O)COP(=O)(OP(=O)(OCC1(C(OP([O-])(=O)[O-])C(O)C(O1)N3(C2(=C(C(N)=NC=N2)N=C3))))[O-])[O-]}}
+
** [http://www.uniprot.org/uniprot/P17445 P17445]
−
{{#set: inchi key=InChIKey=VGEBXBQECGWCRH-JXUSAFQPSA-I}}
+
** [http://www.uniprot.org/uniprot/P28237 P28237]
−
{{#set: common name=3-hydroxypimeloyl-CoA}}
+
** [http://www.uniprot.org/uniprot/P42757 P42757]
−
{{#set: molecular weight=920.648    }}
+
** [http://www.uniprot.org/uniprot/Q40024 Q40024]
−
{{#set: common name=3-hydroxypimelyl-CoA|5-hydroxy-7-oxoheptanoyl-CoA|3-hydroxy-6-carboxyhexanoyl-CoA}}
+
** [http://www.uniprot.org/uniprot/O24174 O24174]
−
{{#set: consumed or produced by=RXN-15013}}
+
** [http://www.uniprot.org/uniprot/Q43828 Q43828]
 +
** [http://www.uniprot.org/uniprot/Q43829 Q43829]
 +
** [http://www.uniprot.org/uniprot/O22477 O22477]
 +
{{#set: direction=REVERSIBLE}}
 +
{{#set: ec number=EC-1.2.1.8}}
 +
{{#set: gene associated=Tiso_gene_3513}}
 +
{{#set: in pathway=CHOLINE-BETAINE-ANA-PWY|PWY1F-353|PWY-7494|BETSYN-PWY|PWY-3722}}
 +
{{#set: reconstruction category=orthology}}
 +
{{#set: reconstruction source=orthology-esiliculosus}}
 +
{{#set: reconstruction tool=pantograph}}

Revision as of 19:09, 18 March 2018

Reaction BADH-RXN

  • direction:
    • REVERSIBLE
  • ec number:
  • Synonym(s):

Reaction Formula

  • With identifiers:
  • With common name(s):
    • 1 H2O[c] + 1 betaine aldehyde[c] + 1 NAD+[c] <=> 1 NADH[c] + 1 glycine betaine[c] + 2 H+[c]

Genes associated with this reaction

Genes have been associated with this reaction based on different elements listed below.

Pathways

  • CHOLINE-BETAINE-ANA-PWY, choline degradation I: CHOLINE-BETAINE-ANA-PWY
    • 2 reactions found over 2 reactions in the full pathway
  • PWY1F-353, glycine betaine biosynthesis III (plants): PWY1F-353
    • 2 reactions found over 3 reactions in the full pathway
  • PWY-7494, choline degradation IV: PWY-7494
    • 2 reactions found over 4 reactions in the full pathway
  • BETSYN-PWY, glycine betaine biosynthesis I (Gram-negative bacteria): BETSYN-PWY
    • 2 reactions found over 2 reactions in the full pathway
  • PWY-3722, glycine betaine biosynthesis II (Gram-positive bacteria): PWY-3722
    • 1 reactions found over 2 reactions in the full pathway

Reconstruction information

External links




Retrieved from "http://gem-aureme.irisa.fr/tisogem/index.php?title=CPD-10337&oldid=22275"