Difference between revisions of "CPD-19158"

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(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=S-ADENMETSYN-RXN S-ADENMETSYN-RXN] == * direction: ** LEFT-TO-RIGHT * common name: ** S-adenosylmet...")
(Created page with "Category:Gene == Gene Tiso_gene_17705 == * left end position: ** 1348 * transcription direction: ** POSITIVE * right end position: ** 3028 * centisome position: ** 38.3717...")
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[[Category:Reaction]]
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[[Category:Gene]]
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== Reaction [http://metacyc.org/META/NEW-IMAGE?object=S-ADENMETSYN-RXN S-ADENMETSYN-RXN] ==
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== Gene Tiso_gene_17705 ==
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* direction:
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* left end position:
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** LEFT-TO-RIGHT
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** 1348
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* common name:
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* transcription direction:
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** S-adenosylmethionine synthase 1
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** POSITIVE
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* ec number:
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* right end position:
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** [http://enzyme.expasy.org/EC/2.5.1.6 EC-2.5.1.6]
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** 3028
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* centisome position:
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** 38.37176   
 
* Synonym(s):
 
* Synonym(s):
  
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== Reaction Formula ==
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== Reactions associated ==
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* With identifiers:
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* [[HOMOSERKIN-RXN]]
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** 1 [[WATER]][c] '''+''' 1 [[MET]][c] '''+''' 1 [[ATP]][c] '''=>''' 1 [[S-ADENOSYLMETHIONINE]][c] '''+''' 1 [[Pi]][c] '''+''' 1 [[PPI]][c]
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** in-silico_annotation
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* With common name(s):
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***ec-number
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** 1 H2O[c] '''+''' 1 L-methionine[c] '''+''' 1 ATP[c] '''=>''' 1 S-adenosyl-L-methionine[c] '''+''' 1 phosphate[c] '''+''' 1 diphosphate[c]
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** experimental_annotation
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***ec-number
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== Genes associated with this reaction  ==
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Genes have been associated with this reaction based on different elements listed below.
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* [[Tiso_gene_13443]]
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** EXPERIMENTAL_ANNOTATION
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***EC-NUMBER
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** [[pantograph]]-[[athaliana]]
 
** [[pantograph]]-[[athaliana]]
 
** [[pantograph]]-[[synechocystis]]
 
** [[pantograph]]-[[synechocystis]]
 
** [[pantograph]]-[[esiliculosus]]
 
** [[pantograph]]-[[esiliculosus]]
 
** [[pantograph]]-[[creinhardtii]]
 
** [[pantograph]]-[[creinhardtii]]
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== Pathways ==
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== Pathways associated ==
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* [[SAM-PWY]], S-adenosyl-L-methionine biosynthesis: [http://metacyc.org/META/NEW-IMAGE?object=SAM-PWY SAM-PWY]
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* [[PWY-702]]
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** '''1''' reactions found over '''1''' reactions in the full pathway
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* [[HOMOSER-THRESYN-PWY]]
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* [[METHIONINE-DEG1-PWY]], L-methionine degradation I (to L-homocysteine): [http://metacyc.org/META/NEW-IMAGE?object=METHIONINE-DEG1-PWY METHIONINE-DEG1-PWY]
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** '''3''' reactions found over '''3''' reactions in the full pathway
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* [[ETHYL-PWY]], ethylene biosynthesis I (plants): [http://metacyc.org/META/NEW-IMAGE?object=ETHYL-PWY ETHYL-PWY]
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** '''2''' reactions found over '''3''' reactions in the full pathway
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* [[PWY-5912]], 2'-deoxymugineic acid phytosiderophore biosynthesis: [http://metacyc.org/META/NEW-IMAGE?object=PWY-5912 PWY-5912]
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** '''1''' reactions found over '''4''' reactions in the full pathway
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* [[PWY-5041]], S-adenosyl-L-methionine cycle II: [http://metacyc.org/META/NEW-IMAGE?object=PWY-5041 PWY-5041]
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** '''4''' reactions found over '''4''' reactions in the full pathway
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== Reconstruction information  ==
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* [[orthology]]:
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** [[pantograph]]:
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*** [[creinhardtii]]
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*** [[synechocystis]]
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*** [[esiliculosus]]
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*** [[athaliana]]
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* [[manual]]:
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** [[primary_network]]
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* [[annotation]]:
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** [[pathwaytools]]:
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*** [[experimental_annotation]]
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== External links  ==
 
== External links  ==
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* RHEA:
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{{#set: left end position=1348}}
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** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=21080 21080]
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{{#set: transcription direction=POSITIVE}}
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* LIGAND-RXN:
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{{#set: right end position=3028}}
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** [http://www.genome.jp/dbget-bin/www_bget?R00177 R00177]
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{{#set: centisome position=38.37176    }}
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* UNIPROT:
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{{#set: reaction associated=HOMOSERKIN-RXN}}
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** [http://www.uniprot.org/uniprot/P19358 P19358]
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{{#set: pathway associated=PWY-702|HOMOSER-THRESYN-PWY}}
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** [http://www.uniprot.org/uniprot/P18298 P18298]
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** [http://www.uniprot.org/uniprot/Q91X83 Q91X83]
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** [http://www.uniprot.org/uniprot/Q9PNJ8 Q9PNJ8]
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** [http://www.uniprot.org/uniprot/P54419 P54419]
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** [http://www.uniprot.org/uniprot/P56460 P56460]
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** [http://www.uniprot.org/uniprot/Q9JVV6 Q9JVV6]
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** [http://www.uniprot.org/uniprot/Q9CEE0 Q9CEE0]
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** [http://www.uniprot.org/uniprot/O50163 O50163]
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** [http://www.uniprot.org/uniprot/P43762 P43762]
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** [http://www.uniprot.org/uniprot/P23686 P23686]
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** [http://www.uniprot.org/uniprot/P17562 P17562]
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** [http://www.uniprot.org/uniprot/Q7M4Y8 Q7M4Y8]
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** [http://www.uniprot.org/uniprot/Q9S992 Q9S992]
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** [http://www.uniprot.org/uniprot/Q90862 Q90862]
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** [http://www.uniprot.org/uniprot/P13444 P13444]
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** [http://www.uniprot.org/uniprot/P31153 P31153]
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** [http://www.uniprot.org/uniprot/Q00266 Q00266]
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** [http://www.uniprot.org/uniprot/P43281 P43281]
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** [http://www.uniprot.org/uniprot/P40320 P40320]
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** [http://www.uniprot.org/uniprot/P43280 P43280]
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** [http://www.uniprot.org/uniprot/P43282 P43282]
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** [http://www.uniprot.org/uniprot/P48498 P48498]
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** [http://www.uniprot.org/uniprot/P10659 P10659]
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** [http://www.uniprot.org/uniprot/Q39465 Q39465]
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** [http://www.uniprot.org/uniprot/P48466 P48466]
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** [http://www.uniprot.org/uniprot/P49612 P49612]
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** [http://www.uniprot.org/uniprot/P49613 P49613]
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** [http://www.uniprot.org/uniprot/P78003 P78003]
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** [http://www.uniprot.org/uniprot/Q49070 Q49070]
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** [http://www.uniprot.org/uniprot/P0A817 P0A817]
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** [http://www.uniprot.org/uniprot/P50299 P50299]
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** [http://www.uniprot.org/uniprot/O22350 O22350]
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** [http://www.uniprot.org/uniprot/P24260 P24260]
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** [http://www.uniprot.org/uniprot/O60198 O60198]
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** [http://www.uniprot.org/uniprot/Q12642 Q12642]
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{{#set: direction=LEFT-TO-RIGHT}}
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{{#set: common name=S-adenosylmethionine synthase 1}}
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{{#set: ec number=EC-2.5.1.6}}
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{{#set: gene associated=Tiso_gene_13443}}
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{{#set: in pathway=SAM-PWY|METHIONINE-DEG1-PWY|ETHYL-PWY|PWY-5912|PWY-5041}}
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{{#set: reconstruction category=orthology}}
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{{#set: reconstruction tool=pantograph}}
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{{#set: reconstruction source=creinhardtii|synechocystis|esiliculosus|athaliana}}
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{{#set: reconstruction category=manual}}
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{{#set: reconstruction source=primary_network}}
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{{#set: reconstruction category=annotation}}
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{{#set: reconstruction tool=pathwaytools}}
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{{#set: reconstruction source=experimental_annotation}}
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Revision as of 19:32, 18 March 2018

Gene Tiso_gene_17705

  • left end position:
    • 1348
  • transcription direction:
    • POSITIVE
  • right end position:
    • 3028
  • centisome position:
    • 38.37176
  • Synonym(s):

Reactions associated

Pathways associated

External links

Retrieved from "http://gem-aureme.irisa.fr/tisogem/index.php?title=CPD-19158&oldid=25149"