Difference between revisions of "CPD-724"

From metabolic_network
Jump to: navigation, search
(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=ISPH2-RXN ISPH2-RXN] == * direction: ** LEFT-TO-RIGHT * common name: ** ORF * ec number: ** [http:/...")
(Created page with "Category:Pathway == Pathway [http://metacyc.org/META/NEW-IMAGE?object=PWY-6269 PWY-6269] == * taxonomic range: ** [http://metacyc.org/META/NEW-IMAGE?object=TAX-2157 TAX-21...")
Line 1: Line 1:
−
[[Category:Reaction]]
+
[[Category:Pathway]]
−
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=ISPH2-RXN ISPH2-RXN] ==
+
== Pathway [http://metacyc.org/META/NEW-IMAGE?object=PWY-6269 PWY-6269] ==
−
* direction:
+
* taxonomic range:
−
** LEFT-TO-RIGHT
+
** [http://metacyc.org/META/NEW-IMAGE?object=TAX-2157 TAX-2157]
 +
** [http://metacyc.org/META/NEW-IMAGE?object=TAX-2 TAX-2]
 
* common name:
 
* common name:
−
** ORF
+
** adenosylcobalamin salvage from cobinamide II
−
* ec number:
+
−
** [http://enzyme.expasy.org/EC/1.17.7.4 EC-1.17.7.4]
+
 
* Synonym(s):
 
* Synonym(s):
 +
** vitamin B12 biosynthesis
  
−
== Reaction Formula ==
+
== Reaction(s) found ==
−
* With identifiers:
+
'''2''' reactions found over '''7''' reactions in the full pathway
−
** 2 [[PROTON]][c] '''+''' 2 [[Reduced-ferredoxins]][c] '''+''' 1 [[HYDROXY-METHYL-BUTENYL-DIP]][c] '''=>''' 2 [[Oxidized-ferredoxins]][c] '''+''' 1 [[DELTA3-ISOPENTENYL-PP]][c] '''+''' 1 [[WATER]][c]
+
* [[BTUR2-RXN]]
−
* With common name(s):
+
** 1 associated gene(s):
−
** 2 H+[c] '''+''' 2 a reduced ferredoxin [iron-sulfur] cluster[c] '''+''' 1 (E)-4-hydroxy-3-methylbut-2-en-1-yl diphosphate[c] '''=>''' 2 an oxidized ferredoxin [iron-sulfur] cluster[c] '''+''' 1 isopentenyl diphosphate[c] '''+''' 1 H2O[c]
+
*** [[Tiso_gene_6190]]
−
 
+
** 1 reconstruction source(s) associated:
−
== Genes associated with this reaction  ==
+
*** [[orthology-esiliculosus]]
−
Genes have been associated with this reaction based on different elements listed below.
+
* [[RXN-8770]]
−
* [[Tiso_gene_5609]]
+
** 1 associated gene(s):
−
** IN-SILICO_ANNOTATION
+
*** [[Tiso_gene_16271]]
−
***EC-NUMBER
+
** 1 reconstruction source(s) associated:
−
** EXPERIMENTAL_ANNOTATION
+
*** [[annotation-in-silico_annotation]]
−
***EC-NUMBER
+
== Reaction(s) not found ==
−
** [[pantograph]]-[[athaliana]]
+
* [http://metacyc.org/META/NEW-IMAGE?object=COBALAMIN5PSYN-RXN COBALAMIN5PSYN-RXN]
−
** [[pantograph]]-[[synechocystis]]
+
* [http://metacyc.org/META/NEW-IMAGE?object=COBINPGUANYLYLTRANS-RXN COBINPGUANYLYLTRANS-RXN]
−
** [[pantograph]]-[[esiliculosus]]
+
* [http://metacyc.org/META/NEW-IMAGE?object=DMBPPRIBOSYLTRANS-RXN DMBPPRIBOSYLTRANS-RXN]
−
== Pathways  ==
+
* [http://metacyc.org/META/NEW-IMAGE?object=R346-RXN R346-RXN]
−
* [[NONMEVIPP-PWY]], methylerythritol phosphate pathway I: [http://metacyc.org/META/NEW-IMAGE?object=NONMEVIPP-PWY NONMEVIPP-PWY]
+
* [http://metacyc.org/META/NEW-IMAGE?object=RXN-6261 RXN-6261]
−
** '''9''' reactions found over '''9''' reactions in the full pathway
+
−
* [[PWY-7560]], methylerythritol phosphate pathway II: [http://metacyc.org/META/NEW-IMAGE?object=PWY-7560 PWY-7560]
+
−
** '''9''' reactions found over '''9''' reactions in the full pathway
+
−
== Reconstruction information  ==
+
−
* Category: [[orthology]]
+
−
** Source: [[orthology-athaliana]]
+
−
*** Tool: [[pantograph]]
+
−
** Source: [[orthology-synechocystis]]
+
−
*** Tool: [[pantograph]]
+
−
** Source: [[orthology-esiliculosus]]
+
−
*** Tool: [[pantograph]]
+
−
* Category: [[manual]]
+
−
** Source: [[manual-primary_network]]
+
−
* Category: [[annotation]]
+
−
** Source: [[annotation-experimental_annotation]]
+
−
*** Tool: [[pathwaytools]]
+
−
** Source: [[annotation-in-silico_annotation]]
+
−
*** Tool: [[pathwaytools]]
+
 
== External links  ==
 
== External links  ==
−
* LIGAND-RXN:
+
{{#set: taxonomic range=TAX-2157}}
−
** [http://www.genome.jp/dbget-bin/www_bget?R08209 R08209]
+
{{#set: taxonomic range=TAX-2}}
−
** [http://www.genome.jp/dbget-bin/www_bget?R05884 R05884]
+
{{#set: common name=adenosylcobalamin salvage from cobinamide II}}
−
{{#set: direction=LEFT-TO-RIGHT}}
+
{{#set: common name=vitamin B12 biosynthesis}}
−
{{#set: common name=ORF}}
+
{{#set: reaction found=2}}
−
{{#set: ec number=EC-1.17.7.4}}
+
{{#set: total reaction=7}}
−
{{#set: gene associated=Tiso_gene_5609}}
+
{{#set: completion rate=29.0}}
−
{{#set: in pathway=NONMEVIPP-PWY|PWY-7560}}
+
−
{{#set: reconstruction category=orthology|manual|annotation}}
+
−
{{#set: reconstruction source=annotation-experimental_annotation|orthology-esiliculosus|annotation-in-silico_annotation|orthology-athaliana|orthology-synechocystis|manual-primary_network}}
+
−
{{#set: reconstruction tool=pantograph|pathwaytools}}
+

Revision as of 16:10, 21 March 2018

Pathway PWY-6269

  • taxonomic range:
  • common name:
    • adenosylcobalamin salvage from cobinamide II
  • Synonym(s):
    • vitamin B12 biosynthesis

Reaction(s) found

2 reactions found over 7 reactions in the full pathway

Reaction(s) not found

External links

Retrieved from "http://gem-aureme.irisa.fr/tisogem/index.php?title=CPD-724&oldid=32685"