Difference between revisions of "CYANCAT-PWY"

From metabolic_network
Jump to: navigation, search
(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=RIBOKIN-RXN RIBOKIN-RXN] == * direction: ** LEFT-TO-RIGHT * common name: ** ORF ** at1g17160 ** rib...")
 
(Created page with "Category:Gene == Gene Tiso_gene_2452 == * left end position: ** 9912 * transcription direction: ** POSITIVE * right end position: ** 10341 * centisome position: ** 51.0796...")
Line 1: Line 1:
−
[[Category:Reaction]]
+
[[Category:Gene]]
−
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=RIBOKIN-RXN RIBOKIN-RXN] ==
+
== Gene Tiso_gene_2452 ==
−
* direction:
+
* left end position:
−
** LEFT-TO-RIGHT
+
** 9912
−
* common name:
+
* transcription direction:
−
** ORF
+
** POSITIVE
−
** at1g17160
+
* right end position:
−
** ribokinase
+
** 10341
−
* ec number:
+
* centisome position:
−
** [http://enzyme.expasy.org/EC/2.7.1.15 EC-2.7.1.15]
+
** 51.07962   
 
* Synonym(s):
 
* Synonym(s):
  
−
== Reaction Formula ==
+
== Reactions associated ==
−
* With identifiers:
+
* [[ATPASE-RXN]]
−
** 1 [[CPD-10330]][c] '''+''' 1 [[ATP]][c] '''=>''' 1 [[CPD-15318]][c] '''+''' 1 [[ADP]][c] '''+''' 1 [[PROTON]][c]
+
** in-silico_annotation
−
* With common name(s):
+
***ec-number
−
** 1 α-D-ribofuranose[c] '''+''' 1 ATP[c] '''=>''' 1 α-D-ribose 5-phosphate[c] '''+''' 1 ADP[c] '''+''' 1 H+[c]
+
* [[NUCLEOSIDE-TRIPHOSPHATASE-RXN]]
−
 
+
** in-silico_annotation
−
== Genes associated with this reaction  ==
+
***ec-number
−
Genes have been associated with this reaction based on different elements listed below.
+
* [[RXN-12195]]
−
* [[Tiso_gene_7682]]
+
** in-silico_annotation
−
** IN-SILICO_ANNOTATION
+
***ec-number
−
***EC-NUMBER
+
* [[RXN-12196]]
−
** EXPERIMENTAL_ANNOTATION
+
** in-silico_annotation
−
***EC-NUMBER
+
***ec-number
−
** [[pantograph]]-[[esiliculosus]]
+
* [[RXN0-5462]]
−
* [[Tiso_gene_81]]
+
** in-silico_annotation
−
** IN-SILICO_ANNOTATION
+
***ec-number
−
***EC-NUMBER
+
== Pathways associated ==
−
* [[Tiso_gene_82]]
+
* [[PWY-7184]]
−
** IN-SILICO_ANNOTATION
+
* [[PWY-7198]]
−
***EC-NUMBER
+
* [[PWY-6545]]
−
* [[Tiso_gene_17974]]
+
* [[PWY-7210]]
−
** [[pantograph]]-[[esiliculosus]]
+
−
* [[Tiso_gene_18204]]
+
−
** IN-SILICO_ANNOTATION
+
−
***AUTOMATED-NAME-MATCH
+
−
** [[pantograph]]-[[esiliculosus]]
+
−
* [[Tiso_gene_911]]
+
−
** IN-SILICO_ANNOTATION
+
−
***EC-NUMBER
+
−
== Pathways ==
+
−
* [[RIBOKIN-PWY]], ribose degradation: [http://metacyc.org/META/NEW-IMAGE?object=RIBOKIN-PWY RIBOKIN-PWY]
+
−
** '''2''' reactions found over '''3''' reactions in the full pathway
+
−
== Reconstruction information  ==
+
−
* [[orthology]]:
+
−
** [[pantograph]]:
+
−
*** [[esiliculosus]]
+
−
* [[annotation]]:
+
−
** [[pathwaytools]]:
+
−
*** [[experimental_annotation]]
+
−
*** [[in-silico_annotation]]
+
 
== External links  ==
 
== External links  ==
−
* RHEA:
+
{{#set: left end position=9912}}
−
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=13697 13697]
+
{{#set: transcription direction=POSITIVE}}
−
* LIGAND-RXN:
+
{{#set: right end position=10341}}
−
** [http://www.genome.jp/dbget-bin/www_bget?R01051 R01051]
+
{{#set: centisome position=51.07962    }}
−
* UNIPROT:
+
{{#set: reaction associated=ATPASE-RXN|NUCLEOSIDE-TRIPHOSPHATASE-RXN|RXN-12195|RXN-12196|RXN0-5462}}
−
** [http://www.uniprot.org/uniprot/P44331 P44331]
+
{{#set: pathway associated=PWY-7184|PWY-7198|PWY-6545|PWY-7210}}
−
** [http://www.uniprot.org/uniprot/P36945 P36945]
+
−
** [http://www.uniprot.org/uniprot/Q57849 Q57849]
+
−
** [http://www.uniprot.org/uniprot/Q9CF42 Q9CF42]
+
−
** [http://www.uniprot.org/uniprot/P25332 P25332]
+
−
** [http://www.uniprot.org/uniprot/P0A9J6 P0A9J6]
+
−
** [http://www.uniprot.org/uniprot/O93727 O93727]
+
−
{{#set: direction=LEFT-TO-RIGHT}}
+
−
{{#set: common name=ORF}}
+
−
{{#set: common name=at1g17160}}
+
−
{{#set: common name=ribokinase}}
+
−
{{#set: ec number=EC-2.7.1.15}}
+
−
{{#set: gene associated=Tiso_gene_7682|Tiso_gene_81|Tiso_gene_82|Tiso_gene_17974|Tiso_gene_18204|Tiso_gene_911}}
+
−
{{#set: in pathway=RIBOKIN-PWY}}
+
−
{{#set: reconstruction category=orthology}}
+
−
{{#set: reconstruction tool=pantograph}}
+
−
{{#set: reconstruction source=esiliculosus}}
+
−
{{#set: reconstruction category=annotation}}
+
−
{{#set: reconstruction tool=pathwaytools}}
+
−
{{#set: reconstruction source=experimental_annotation|in-silico_annotation}}
+

Revision as of 16:50, 10 January 2018

Gene Tiso_gene_2452

  • left end position:
    • 9912
  • transcription direction:
    • POSITIVE
  • right end position:
    • 10341
  • centisome position:
    • 51.07962
  • Synonym(s):

Reactions associated

Pathways associated

External links

Retrieved from "http://gem-aureme.irisa.fr/tisogem/index.php?title=CYANCAT-PWY&oldid=10573"