Difference between revisions of "Category:Pathway"
From metabolic_network
(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-17855 RXN-17855] == * direction: ** LEFT-TO-RIGHT * ec number: ** [http://enzyme.expasy.org/EC/...") |
(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=SHIKIMATE-5-DEHYDROGENASE-RXN SHIKIMATE-5-DEHYDROGENASE-RXN] == * direction: ** LEFT-TO-RIGHT * com...") |
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Line 1: | Line 1: | ||
[[Category:Reaction]] | [[Category:Reaction]] | ||
− | == Reaction [http://metacyc.org/META/NEW-IMAGE?object= | + | == Reaction [http://metacyc.org/META/NEW-IMAGE?object=SHIKIMATE-5-DEHYDROGENASE-RXN SHIKIMATE-5-DEHYDROGENASE-RXN] == |
* direction: | * direction: | ||
** LEFT-TO-RIGHT | ** LEFT-TO-RIGHT | ||
+ | * common name: | ||
+ | ** pentafunctional_protein | ||
* ec number: | * ec number: | ||
− | ** [http://enzyme.expasy.org/EC/ | + | ** [http://enzyme.expasy.org/EC/1.1.1.25 EC-1.1.1.25] |
* Synonym(s): | * Synonym(s): | ||
== Reaction Formula == | == Reaction Formula == | ||
* With identifiers: | * With identifiers: | ||
− | ** 1 [[ | + | ** 1 [[PROTON]][c] '''+''' 1 [[NADPH]][c] '''+''' 1 [[3-DEHYDRO-SHIKIMATE]][c] '''=>''' 1 [[NADP]][c] '''+''' 1 [[SHIKIMATE]][c] |
* With common name(s): | * With common name(s): | ||
− | ** 1 | + | ** 1 H+[c] '''+''' 1 NADPH[c] '''+''' 1 3-dehydroshikimate[c] '''=>''' 1 NADP+[c] '''+''' 1 shikimate[c] |
== Genes associated with this reaction == | == Genes associated with this reaction == | ||
+ | Genes have been associated with this reaction based on different elements listed below. | ||
+ | * Gene: [[Tiso_gene_5752]] | ||
+ | ** Source: [[annotation-in-silico_annotation]] | ||
+ | *** Assignment: EC-NUMBER | ||
+ | * Gene: [[Tiso_gene_5753]] | ||
+ | ** Source: [[annotation-in-silico_annotation]] | ||
+ | *** Assignment: EC-NUMBER | ||
+ | ** Source: [[orthology-esiliculosus]] | ||
== Pathways == | == Pathways == | ||
− | * [[PWY- | + | * [[PWY-6163]], chorismate biosynthesis from 3-dehydroquinate: [http://metacyc.org/META/NEW-IMAGE?object=PWY-6163 PWY-6163] |
− | ** ''' | + | ** '''6''' reactions found over '''6''' reactions in the full pathway |
== Reconstruction information == | == Reconstruction information == | ||
+ | * Category: [[orthology]] | ||
+ | ** Source: [[orthology-esiliculosus]] | ||
+ | *** Tool: [[pantograph]] | ||
+ | * Category: [[manual]] | ||
+ | ** Source: [[manual-primary_network]] | ||
* Category: [[annotation]] | * Category: [[annotation]] | ||
** Source: [[annotation-in-silico_annotation]] | ** Source: [[annotation-in-silico_annotation]] | ||
− | |||
− | |||
*** Tool: [[pathwaytools]] | *** Tool: [[pathwaytools]] | ||
== External links == | == External links == | ||
+ | * RHEA: | ||
+ | ** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=17737 17737] | ||
+ | * LIGAND-RXN: | ||
+ | ** [http://www.genome.jp/dbget-bin/www_bget?R02413 R02413] | ||
+ | * UNIPROT: | ||
+ | ** [http://www.uniprot.org/uniprot/P07547 P07547] | ||
+ | ** [http://www.uniprot.org/uniprot/P08566 P08566] | ||
+ | ** [http://www.uniprot.org/uniprot/Q58484 Q58484] | ||
+ | ** [http://www.uniprot.org/uniprot/Q9PIA0 Q9PIA0] | ||
+ | ** [http://www.uniprot.org/uniprot/P0A6D5 P0A6D5] | ||
+ | ** [http://www.uniprot.org/uniprot/Q9CES7 Q9CES7] | ||
+ | ** [http://www.uniprot.org/uniprot/Q44606 Q44606] | ||
+ | ** [http://www.uniprot.org/uniprot/Q44608 Q44608] | ||
+ | ** [http://www.uniprot.org/uniprot/Q44609 Q44609] | ||
+ | ** [http://www.uniprot.org/uniprot/Q44610 Q44610] | ||
+ | ** [http://www.uniprot.org/uniprot/Q44611 Q44611] | ||
+ | ** [http://www.uniprot.org/uniprot/Q44612 Q44612] | ||
+ | ** [http://www.uniprot.org/uniprot/P15770 P15770] | ||
+ | ** [http://www.uniprot.org/uniprot/Q42947 Q42947] | ||
+ | ** [http://www.uniprot.org/uniprot/O65917 O65917] | ||
{{#set: direction=LEFT-TO-RIGHT}} | {{#set: direction=LEFT-TO-RIGHT}} | ||
− | {{#set: ec number=EC- | + | {{#set: common name=pentafunctional_protein}} |
− | {{#set: in pathway=PWY- | + | {{#set: ec number=EC-1.1.1.25}} |
− | {{#set: reconstruction category=annotation}} | + | {{#set: gene associated=Tiso_gene_5752|Tiso_gene_5753}} |
− | {{#set: reconstruction source=annotation-in-silico_annotation| | + | {{#set: in pathway=PWY-6163}} |
− | {{#set: reconstruction tool=pathwaytools}} | + | {{#set: reconstruction category=orthology|manual|annotation}} |
+ | {{#set: reconstruction source=manual-primary_network|annotation-in-silico_annotation|orthology-esiliculosus}} | ||
+ | {{#set: reconstruction tool=pantograph|pathwaytools}} |
Revision as of 17:09, 21 March 2018
Contents
Reaction SHIKIMATE-5-DEHYDROGENASE-RXN
- direction:
- LEFT-TO-RIGHT
- common name:
- pentafunctional_protein
- ec number:
- Synonym(s):
Reaction Formula
- With identifiers:
- 1 PROTON[c] + 1 NADPH[c] + 1 3-DEHYDRO-SHIKIMATE[c] => 1 NADP[c] + 1 SHIKIMATE[c]
- With common name(s):
- 1 H+[c] + 1 NADPH[c] + 1 3-dehydroshikimate[c] => 1 NADP+[c] + 1 shikimate[c]
Genes associated with this reaction
Genes have been associated with this reaction based on different elements listed below.
- Gene: Tiso_gene_5752
- Source: annotation-in-silico_annotation
- Assignment: EC-NUMBER
- Source: annotation-in-silico_annotation
- Gene: Tiso_gene_5753
- Source: annotation-in-silico_annotation
- Assignment: EC-NUMBER
- Source: orthology-esiliculosus
- Source: annotation-in-silico_annotation
Pathways
- PWY-6163, chorismate biosynthesis from 3-dehydroquinate: PWY-6163
- 6 reactions found over 6 reactions in the full pathway
Reconstruction information
- Category: orthology
- Source: orthology-esiliculosus
- Tool: pantograph
- Source: orthology-esiliculosus
- Category: manual
- Source: manual-primary_network
- Category: annotation
- Source: annotation-in-silico_annotation
- Tool: pathwaytools
- Source: annotation-in-silico_annotation
External links
- RHEA:
- LIGAND-RXN:
- UNIPROT:
Pages in category "Pathway"
The following 200 pages are in this category, out of 1,205 total.
(previous page) (next page)P
- PWY-2301
- PWY-241
- PWY1F-353
- PWY-2541
- PWY-2582
- PWY-5386
- PWY-2722
- PWY-2723
- PWY-2781
- PWY-2941
- PWY-7388
- PWY-3081
- PWY-6520
- PWY-3121
- PWY-321
- PWY-3221
- PWY-3301
- PWY-6745
- PWY-5353
- PWY-3461
- PWY-3462
- PWY-1781
- PWY-3581
- PWY-7279
- PWY-361
- PWY-7764
- PWY-3641
- PWY-5960
- PWY-3661
- PWY-3661-1
- PWY-3722
- PWY-3781
- PWY-3801
- PWY-3821
- PWY-3841
- PWY-3861
- PWY-3881
- PWY-3941
- PWY-3961
- PWY-7316
- PWY-3981
- PWY-40
- PWY-401
- PWY-4041
- PWY-4061
- PWY-4081
- PWY-4101
- PWY-4321
- PWY-7126
- PWY-4341
- PWY-4361
- PWY-5367
- PWY-4381
- PWY-6801
- PWY-4521
- PWY-46
- PWY-7342
- PWY-4661
- PWY66-21
- PWY-4702
- PWY-7328
- PWY-481
- PWY-6823
- PWY-4841
- PWY-4861
- PWY-4921
- PWY-5531
- PWY-4983
- PWY-5
- PWY-5022
- PWY-5026
- PWY-5030
- PWY-7165
- PWY-5033
- PWY-5034
- PWY-5035
- PWY-5041
- PWY-5046
- PWY-5508
- PWY-5047
- PWY-5048
- PWY-5054
- PWY-5057
- PWY-5059
- PWY-5060
- PWY-5063
- PWY-5064
- PWY-5070
- PWY-5074
- PWY-7638
- PWY-5078
- PWY-5079
- PWY-5080
- PWY-5082
- PWY-7398
- PWY-5083
- PWY-5086
- PWY0-1329
- PWY-5097
- PWY-5101
- PWY-5104
- PWY-6627
- PWY-5107
- PWY-5108
- PWY-7312
- PWY-5109
- PWY-5115
- PWY-5120
- PWY-5122
- PWY-5123
- PWY-7185
- PWY-5135
- PWY0-1296
- PWY-5136
- PWY-5138
- PWY-5139
- PWY-5147
- PWY-6113
- PWY-5148
- PWY-5151
- PWY-5152
- PWY-5153
- PWY-5154
- PWY-5155
- PWY-5162
- PWY-4984
- PWY-5168
- PWY-5177
- PWY-5188
- PWY-5189
- PWY-5194
- PWY-5196
- PWY-6039
- PWY-5265
- PWY-5659
- PWY-5268
- PWY-5269
- PWY-5278
- PWY-5285
- PWY-6773
- PWY-5288
- PWY-5290
- PWY0-1182
- PWY-5294
- PWY-5298
- PWY-5307
- PWY-5314
- PWY-5316
- PWY-7153
- PWY-5317
- PWY0-823
- PWY-5324
- PWY-5329
- PWY-5331
- PWY-5337
- PWY-5338
- PWY-5340
- PWY-5344
- PWY-7413
- PWY-6100
- PWY-5366
- PWY-5695
- PHESYN
- PWY-5381
- PWY-5384
- PWY-5392
- PWY-5399
- PWY-5410
- PWY-5436
- PWY-5437
- PWY-5441
- PWY-5443
- PWY-5451
- PWY-6952
- PWY-5468
- PWY-6854
- PWY-5469
- PWY-5474
- PWY-5480
- PWY-5482
- PWY-5484
- PWY-5697
- PWY-5486
- PWY-5489
- PWY-5517
- PWY-5490
- PWY-5491
- PWY-5497
- PWY-5499
- PWY-5506
- PWY-5514
- PWY-5515
- PWY-5516
- PWY-5523