Difference between revisions of "DARABITOLUTIL-PWY"

From metabolic_network
Jump to: navigation, search
(Created page with "Category:Pathway == Pathway [http://metacyc.org/META/NEW-IMAGE?object=PHENYLALANINE-DEG1-PWY PHENYLALANINE-DEG1-PWY] == * taxonomic range: ** [http://metacyc.org/META/NEW-...")
(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=ACETATE--COA-LIGASE-RXN ACETATE--COA-LIGASE-RXN] == * direction: ** LEFT-TO-RIGHT * common name: **...")
Line 1: Line 1:
−
[[Category:Pathway]]
+
[[Category:Reaction]]
−
== Pathway [http://metacyc.org/META/NEW-IMAGE?object=PHENYLALANINE-DEG1-PWY PHENYLALANINE-DEG1-PWY] ==
+
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=ACETATE--COA-LIGASE-RXN ACETATE--COA-LIGASE-RXN] ==
−
* taxonomic range:
+
* direction:
−
** [http://metacyc.org/META/NEW-IMAGE?object=TAX-4751 TAX-4751]
+
** LEFT-TO-RIGHT
−
** [http://metacyc.org/META/NEW-IMAGE?object=TAX-40674 TAX-40674]
+
−
** [http://metacyc.org/META/NEW-IMAGE?object=TAX-2 TAX-2]
+
 
* common name:
 
* common name:
−
** L-phenylalanine degradation I (aerobic)
+
** acetyl-coenzyme_a_synthetase
 +
* ec number:
 +
** [http://enzyme.expasy.org/EC/6.2.1.1 EC-6.2.1.1]
 
* Synonym(s):
 
* Synonym(s):
  
−
== Reaction(s) found ==
+
== Reaction Formula ==
−
'''1''' reactions found over '''3''' reactions in the full pathway
+
* With identifiers:
−
* [[RXN-7908]]
+
** 1 [[CO-A]][c] '''+''' 1 [[ATP]][c] '''+''' 1 [[ACET]][c] '''=>''' 1 [[ACETYL-COA]][c] '''+''' 1 [[AMP]][c] '''+''' 1 [[PPI]][c]
−
** 2 associated gene(s):
+
* With common name(s):
−
*** [[Tiso_gene_14845]]
+
** 1 coenzyme A[c] '''+''' 1 ATP[c] '''+''' 1 acetate[c] '''=>''' 1 acetyl-CoA[c] '''+''' 1 AMP[c] '''+''' 1 diphosphate[c]
−
*** [[Tiso_gene_14844]]
+
 
−
** 2 reconstruction source(s) associated:
+
== Genes associated with this reaction  ==
−
*** [[annotation-in-silico_annotation]]
+
Genes have been associated with this reaction based on different elements listed below.
−
*** [[orthology-esiliculosus]]
+
* Gene: [[Tiso_gene_3617]]
−
== Reaction(s) not found ==
+
** Source: [[annotation-in-silico_annotation]]
−
* [http://metacyc.org/META/NEW-IMAGE?object=PHENYLALANINE-4-MONOOXYGENASE-RXN PHENYLALANINE-4-MONOOXYGENASE-RXN]
+
*** Assignment: EC-NUMBER
−
* [http://metacyc.org/META/NEW-IMAGE?object=RXN-7909 RXN-7909]
+
** Source: [[orthology-esiliculosus]]
 +
** Source: [[orthology-creinhardtii]]
 +
* Gene: [[Tiso_gene_1612]]
 +
** Source: [[annotation-in-silico_annotation]]
 +
*** Assignment: EC-NUMBER
 +
** Source: [[annotation-experimental_annotation]]
 +
*** Assignment: EC-NUMBER
 +
** Source: [[orthology-synechocystis]]
 +
** Source: [[orthology-esiliculosus]]
 +
** Source: [[orthology-creinhardtii]]
 +
* Gene: [[Tiso_gene_3616]]
 +
** Source: [[annotation-in-silico_annotation]]
 +
*** Assignment: EC-NUMBER
 +
** Source: [[annotation-experimental_annotation]]
 +
*** Assignment: EC-NUMBER
 +
== Pathways  ==
 +
* [[PWY66-161]], ethanol degradation III: [http://metacyc.org/META/NEW-IMAGE?object=PWY66-161 PWY66-161]
 +
** '''2''' reactions found over '''3''' reactions in the full pathway
 +
* [[PWY66-21]], ethanol degradation II: [http://metacyc.org/META/NEW-IMAGE?object=PWY66-21 PWY66-21]
 +
** '''3''' reactions found over '''3''' reactions in the full pathway
 +
* [[PWY66-162]], ethanol degradation IV: [http://metacyc.org/META/NEW-IMAGE?object=PWY66-162 PWY66-162]
 +
** '''2''' reactions found over '''3''' reactions in the full pathway
 +
* [[PWY0-1313]], acetate conversion to acetyl-CoA: [http://metacyc.org/META/NEW-IMAGE?object=PWY0-1313 PWY0-1313]
 +
** '''1''' reactions found over '''1''' reactions in the full pathway
 +
* [[PWY-6672]], cis-genanyl-CoA degradation: [http://metacyc.org/META/NEW-IMAGE?object=PWY-6672 PWY-6672]
 +
** '''4''' reactions found over '''9''' reactions in the full pathway
 +
* [[PWY-7118]], chitin degradation to ethanol: [http://metacyc.org/META/NEW-IMAGE?object=PWY-7118 PWY-7118]
 +
** '''4''' reactions found over '''6''' reactions in the full pathway
 +
== Reconstruction information  ==
 +
* Category: [[orthology]]
 +
** Source: [[orthology-creinhardtii]]
 +
*** Tool: [[pantograph]]
 +
** Source: [[orthology-synechocystis]]
 +
*** Tool: [[pantograph]]
 +
** Source: [[orthology-esiliculosus]]
 +
*** Tool: [[pantograph]]
 +
* Category: [[manual]]
 +
** Source: [[manual-primary_network]]
 +
* Category: [[annotation]]
 +
** Source: [[annotation-experimental_annotation]]
 +
*** Tool: [[pathwaytools]]
 +
** Source: [[annotation-in-silico_annotation]]
 +
*** Tool: [[pathwaytools]]
 
== External links  ==
 
== External links  ==
−
{{#set: taxonomic range=TAX-4751}}
+
* RHEA:
−
{{#set: taxonomic range=TAX-40674}}
+
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=23176 23176]
−
{{#set: taxonomic range=TAX-2}}
+
* LIGAND-RXN:
−
{{#set: common name=L-phenylalanine degradation I (aerobic)}}
+
** [http://www.genome.jp/dbget-bin/www_bget?R00235 R00235]
−
{{#set: reaction found=1}}
+
* UNIPROT:
−
{{#set: total reaction=3}}
+
** [http://www.uniprot.org/uniprot/P27095 P27095]
−
{{#set: completion rate=33.0}}
+
** [http://www.uniprot.org/uniprot/P31638 P31638]
 +
** [http://www.uniprot.org/uniprot/Q12662 Q12662]
 +
** [http://www.uniprot.org/uniprot/P28812 P28812]
 +
** [http://www.uniprot.org/uniprot/P27550 P27550]
 +
** [http://www.uniprot.org/uniprot/O34613 O34613]
 +
** [http://www.uniprot.org/uniprot/Q9PMD2 Q9PMD2]
 +
** [http://www.uniprot.org/uniprot/P36333 P36333]
 +
** [http://www.uniprot.org/uniprot/Q01574 Q01574]
 +
** [http://www.uniprot.org/uniprot/P39062 P39062]
 +
** [http://www.uniprot.org/uniprot/Q01576 Q01576]
 +
** [http://www.uniprot.org/uniprot/P52910 P52910]
 +
** [http://www.uniprot.org/uniprot/Q55404 Q55404]
 +
** [http://www.uniprot.org/uniprot/P16928 P16928]
 +
** [http://www.uniprot.org/uniprot/P16929 P16929]
 +
** [http://www.uniprot.org/uniprot/O68040 O68040]
 +
** [http://www.uniprot.org/uniprot/P78773 P78773]
 +
{{#set: direction=LEFT-TO-RIGHT}}
 +
{{#set: common name=acetyl-coenzyme_a_synthetase}}
 +
{{#set: ec number=EC-6.2.1.1}}
 +
{{#set: gene associated=Tiso_gene_3617|Tiso_gene_1612|Tiso_gene_3616}}
 +
{{#set: in pathway=PWY66-161|PWY66-21|PWY66-162|PWY0-1313|PWY-6672|PWY-7118}}
 +
{{#set: reconstruction category=orthology|manual|annotation}}
 +
{{#set: reconstruction source=annotation-experimental_annotation|orthology-esiliculosus|annotation-in-silico_annotation|orthology-synechocystis|manual-primary_network|orthology-creinhardtii}}
 +
{{#set: reconstruction tool=pantograph|pathwaytools}}

Revision as of 15:56, 21 March 2018

Reaction ACETATE--COA-LIGASE-RXN

  • direction:
    • LEFT-TO-RIGHT
  • common name:
    • acetyl-coenzyme_a_synthetase
  • ec number:
  • Synonym(s):

Reaction Formula

  • With identifiers:
  • With common name(s):
    • 1 coenzyme A[c] + 1 ATP[c] + 1 acetate[c] => 1 acetyl-CoA[c] + 1 AMP[c] + 1 diphosphate[c]

Genes associated with this reaction

Genes have been associated with this reaction based on different elements listed below.

Pathways

  • PWY66-161, ethanol degradation III: PWY66-161
    • 2 reactions found over 3 reactions in the full pathway
  • PWY66-21, ethanol degradation II: PWY66-21
    • 3 reactions found over 3 reactions in the full pathway
  • PWY66-162, ethanol degradation IV: PWY66-162
    • 2 reactions found over 3 reactions in the full pathway
  • PWY0-1313, acetate conversion to acetyl-CoA: PWY0-1313
    • 1 reactions found over 1 reactions in the full pathway
  • PWY-6672, cis-genanyl-CoA degradation: PWY-6672
    • 4 reactions found over 9 reactions in the full pathway
  • PWY-7118, chitin degradation to ethanol: PWY-7118
    • 4 reactions found over 6 reactions in the full pathway

Reconstruction information

External links





Retrieved from "http://gem-aureme.irisa.fr/tisogem/index.php?title=DARABITOLUTIL-PWY&oldid=31291"