Difference between revisions of "DETOX1-PWY"

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(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=LYSINE--TRNA-LIGASE-RXN LYSINE--TRNA-LIGASE-RXN] == * direction: ** LEFT-TO-RIGHT * common name: **...")
 
(Created page with "Category:Pathway == Pathway [http://metacyc.org/META/NEW-IMAGE?object=DETOX1-PWY DETOX1-PWY] == * taxonomic range: ** [http://metacyc.org/META/NEW-IMAGE?object=TAX-2759 TA...")
 
(3 intermediate revisions by the same user not shown)
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[[Category:Reaction]]
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[[Category:Pathway]]
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== Reaction [http://metacyc.org/META/NEW-IMAGE?object=LYSINE--TRNA-LIGASE-RXN LYSINE--TRNA-LIGASE-RXN] ==
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== Pathway [http://metacyc.org/META/NEW-IMAGE?object=DETOX1-PWY DETOX1-PWY] ==
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* direction:
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* taxonomic range:
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** LEFT-TO-RIGHT
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** [http://metacyc.org/META/NEW-IMAGE?object=TAX-2759 TAX-2759]
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** [http://metacyc.org/META/NEW-IMAGE?object=TAX-2 TAX-2]
 
* common name:
 
* common name:
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** lysine--trna_ligase
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** superoxide radicals degradation
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* ec number:
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** [http://enzyme.expasy.org/EC/6.1.1.6 EC-6.1.1.6]
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* Synonym(s):
 
* Synonym(s):
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** removal of superoxide radicals
  
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== Reaction Formula ==
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== Reaction(s) found ==
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* With identifiers:
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'''2''' reactions found over '''2''' reactions in the full pathway
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** 1 [[LYS]][c] '''+''' 1 [[ATP]][c] '''+''' 1 [[LYS-tRNAs]][c] '''=>''' 1 [[AMP]][c] '''+''' 1 [[PPI]][c] '''+''' 1 [[Charged-LYS-tRNAs]][c]
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* [[CATAL-RXN]]
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* With common name(s):
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** 8 associated gene(s):
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** 1 L-lysine[c] '''+''' 1 ATP[c] '''+''' 1 a tRNAlys[c] '''=>''' 1 AMP[c] '''+''' 1 diphosphate[c] '''+''' 1 an L-lysyl-[tRNAlys][c]
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*** [[Tiso_gene_3006]]
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*** [[Tiso_gene_11607]]
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== Genes associated with this reaction  ==
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*** [[Tiso_gene_11916]]
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Genes have been associated with this reaction based on different elements listed below.
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*** [[Tiso_gene_12499]]
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* [[Tiso_gene_16635]]
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*** [[Tiso_gene_5435]]
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** EXPERIMENTAL_ANNOTATION
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*** [[Tiso_gene_4990]]
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***EC-NUMBER
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*** [[Tiso_gene_19683]]
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** [[pantograph]]-[[esiliculosus]]
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*** [[Tiso_gene_15923]]
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* [[Tiso_gene_6705]]
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** 3 reconstruction source(s) associated:
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** IN-SILICO_ANNOTATION
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*** [[annotation-in-silico_annotation]]
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***EC-NUMBER
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*** [[annotation-experimental_annotation]]
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** EXPERIMENTAL_ANNOTATION
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*** [[orthology-synechocystis]]
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***EC-NUMBER
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* [[SUPEROX-DISMUT-RXN]]
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** [[pantograph]]-[[esiliculosus]]
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** 5 associated gene(s):
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== Pathways  ==
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*** [[Tiso_gene_3587]]
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* [[TRNA-CHARGING-PWY]], tRNA charging: [http://metacyc.org/META/NEW-IMAGE?object=TRNA-CHARGING-PWY TRNA-CHARGING-PWY]
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*** [[Tiso_gene_15757]]
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** '''21''' reactions found over '''21''' reactions in the full pathway
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*** [[Tiso_gene_12651]]
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== Reconstruction information  ==
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*** [[Tiso_gene_20023]]
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* [[orthology]]:
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*** [[Tiso_gene_12652]]
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** [[pantograph]]:
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** 4 reconstruction source(s) associated:
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*** [[esiliculosus]]
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*** [[annotation-in-silico_annotation]]
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* [[annotation]]:
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*** [[annotation-experimental_annotation]]
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** [[pathwaytools]]:
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*** [[orthology-synechocystis]]
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*** [[experimental_annotation]]
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*** [[orthology-esiliculosus]]
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*** [[in-silico_annotation]]
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== Reaction(s) not found ==
 
== External links  ==
 
== External links  ==
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* LIGAND-RXN:
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* ECOCYC:
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** [http://www.genome.jp/dbget-bin/www_bget?R03658 R03658]
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** [http://metacyc.org/ECOLI/NEW-IMAGE?object=DETOX1-PWY DETOX1-PWY]
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* UNIPROT:
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* ARACYC:
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** [http://www.uniprot.org/uniprot/P41258 P41258]
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** [http://metacyc.org/ARA/NEW-IMAGE?object=DETOX1-PWY DETOX1-PWY]
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** [http://www.uniprot.org/uniprot/P46861 P46861]
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{{#set: taxonomic range=TAX-2759}}
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** [http://www.uniprot.org/uniprot/P47382 P47382]
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{{#set: taxonomic range=TAX-2}}
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** [http://www.uniprot.org/uniprot/O57963 O57963]
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{{#set: common name=superoxide radicals degradation}}
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** [http://www.uniprot.org/uniprot/O51603 O51603]
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{{#set: common name=removal of superoxide radicals}}
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** [http://www.uniprot.org/uniprot/Q9JTT7 Q9JTT7]
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{{#set: reaction found=2}}
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** [http://www.uniprot.org/uniprot/O83650 O83650]
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{{#set: total reaction=2}}
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** [http://www.uniprot.org/uniprot/Q9X231 Q9X231]
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{{#set: completion rate=100.0}}
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** [http://www.uniprot.org/uniprot/P43825 P43825]
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** [http://www.uniprot.org/uniprot/Q9ZDF8 Q9ZDF8]
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** [http://www.uniprot.org/uniprot/O84786 O84786]
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** [http://www.uniprot.org/uniprot/Q9Z6X5 Q9Z6X5]
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** [http://www.uniprot.org/uniprot/Q9CII7 Q9CII7]
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** [http://www.uniprot.org/uniprot/P56126 P56126]
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** [http://www.uniprot.org/uniprot/Q9ZMP8 Q9ZMP8]
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** [http://www.uniprot.org/uniprot/O67258 O67258]
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** [http://www.uniprot.org/uniprot/O84002 O84002]
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** [http://www.uniprot.org/uniprot/Q9RHV9 Q9RHV9]
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** [http://www.uniprot.org/uniprot/P32048 P32048]
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** [http://www.uniprot.org/uniprot/P37879 P37879]
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** [http://www.uniprot.org/uniprot/Q48986 Q48986]
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** [http://www.uniprot.org/uniprot/P0A8N7 P0A8N7]
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** [http://www.uniprot.org/uniprot/P37477 P37477]
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** [http://www.uniprot.org/uniprot/P75500 P75500]
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** [http://www.uniprot.org/uniprot/P95970 P95970]
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** [http://www.uniprot.org/uniprot/P73443 P73443]
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** [http://www.uniprot.org/uniprot/P15180 P15180]
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** [http://www.uniprot.org/uniprot/P0A8N3 P0A8N3]
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** [http://www.uniprot.org/uniprot/P0A8N5 P0A8N5]
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** [http://www.uniprot.org/uniprot/Q43776 Q43776]
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** [http://www.uniprot.org/uniprot/O74059 O74059]
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** [http://www.uniprot.org/uniprot/O30522 O30522]
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{{#set: direction=LEFT-TO-RIGHT}}
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{{#set: common name=lysine--trna_ligase}}
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{{#set: ec number=EC-6.1.1.6}}
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{{#set: gene associated=Tiso_gene_16635|Tiso_gene_6705}}
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{{#set: in pathway=TRNA-CHARGING-PWY}}
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{{#set: reconstruction category=orthology}}
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{{#set: reconstruction tool=pantograph}}
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{{#set: reconstruction source=esiliculosus}}
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{{#set: reconstruction category=annotation}}
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{{#set: reconstruction tool=pathwaytools}}
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{{#set: reconstruction source=experimental_annotation|in-silico_annotation}}
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Latest revision as of 20:09, 21 March 2018

Pathway DETOX1-PWY

  • taxonomic range:
  • common name:
    • superoxide radicals degradation
  • Synonym(s):
    • removal of superoxide radicals

Reaction(s) found

2 reactions found over 2 reactions in the full pathway

Reaction(s) not found

External links




Retrieved from "http://gem-aureme.irisa.fr/tisogem/index.php?title=DETOX1-PWY&oldid=39874"