Difference between revisions of "DIAMINOPIMDECARB-RXN"

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(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-9526 RXN-9526] == * direction: ** LEFT-TO-RIGHT * common name: ** trans oct-2-enoyl-[acyl-carri...")
(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=DIAMINOPIMDECARB-RXN DIAMINOPIMDECARB-RXN] == * direction: ** LEFT-TO-RIGHT * common name: ** diami...")
 
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[[Category:Reaction]]
 
[[Category:Reaction]]
−
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-9526 RXN-9526] ==
+
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=DIAMINOPIMDECARB-RXN DIAMINOPIMDECARB-RXN] ==
 
* direction:
 
* direction:
 
** LEFT-TO-RIGHT
 
** LEFT-TO-RIGHT
 
* common name:
 
* common name:
−
** trans oct-2-enoyl-[acyl-carrier protein] reductase (NADPH, B-specific)
+
** diaminopimelate_decarboxylase
−
** polyketide_synthase
+
 
* ec number:
 
* ec number:
−
** [http://enzyme.expasy.org/EC/1.3.1.10 EC-1.3.1.10]
+
** [http://enzyme.expasy.org/EC/4.1.1.20 EC-4.1.1.20]
−
** [http://enzyme.expasy.org/EC/1.3.1.39 EC-1.3.1.39]
+
−
** [http://enzyme.expasy.org/EC/2.3.1.85 EC-2.3.1.85]
+
−
** [http://enzyme.expasy.org/EC/2.3.1.86 EC-2.3.1.86]
+
 
* Synonym(s):
 
* Synonym(s):
−
** trans oct-2-enoyl-ACP reductase
 
−
** trans oct-2-enoyl acyl-carrier-protein reductase
 
  
 
== Reaction Formula ==
 
== Reaction Formula ==
 
* With identifiers:
 
* With identifiers:
−
** 1 [[2-Octenoyl-ACPs]][c] '''+''' 1 [[NADPH]][c] '''+''' 1 [[PROTON]][c] '''=>''' 1 [[Octanoyl-ACPs]][c] '''+''' 1 [[NADP]][c]
+
** 1 [[PROTON]][c] '''+''' 1 [[MESO-DIAMINOPIMELATE]][c] '''=>''' 1 [[CARBON-DIOXIDE]][c] '''+''' 1 [[LYS]][c]
 
* With common name(s):
 
* With common name(s):
−
** 1 a trans oct-2-enoyl-[acp][c] '''+''' 1 NADPH[c] '''+''' 1 H+[c] '''=>''' 1 an octanoyl-[acp][c] '''+''' 1 NADP+[c]
+
** 1 H+[c] '''+''' 1 meso-diaminopimelate[c] '''=>''' 1 CO2[c] '''+''' 1 L-lysine[c]
  
 
== Genes associated with this reaction  ==
 
== Genes associated with this reaction  ==
 
Genes have been associated with this reaction based on different elements listed below.
 
Genes have been associated with this reaction based on different elements listed below.
−
* Gene: [[Tiso_gene_10876]]
+
* Gene: [[Tiso_gene_10737]]
 +
** Source: [[orthology-synechocystis]]
 +
* Gene: [[Tiso_gene_12041]]
 
** Source: [[annotation-in-silico_annotation]]
 
** Source: [[annotation-in-silico_annotation]]
−
*** Assignment: EC-NUMBER
+
*** Assignment: AUTOMATED-NAME-MATCH
−
* Gene: [[Tiso_gene_136]]
+
** Source: [[orthology-athaliana]]
−
** Source: [[annotation-in-silico_annotation]]
+
** Source: [[orthology-synechocystis]]
−
*** Assignment: EC-NUMBER
+
** Source: [[orthology-esiliculosus]]
−
* Gene: [[Tiso_gene_135]]
+
** Source: [[orthology-creinhardtii]]
−
** Source: [[annotation-in-silico_annotation]]
+
−
*** Assignment: EC-NUMBER
+
−
* Gene: [[Tiso_gene_500]]
+
−
** Source: [[annotation-in-silico_annotation]]
+
−
*** Assignment: EC-NUMBER
+
−
* Gene: [[Tiso_gene_13394]]
+
−
** Source: [[annotation-in-silico_annotation]]
+
−
*** Assignment: EC-NUMBER
+
 
== Pathways  ==
 
== Pathways  ==
−
* [[PWY-5994]], palmitate biosynthesis I (animals and fungi): [http://metacyc.org/META/NEW-IMAGE?object=PWY-5994 PWY-5994]
+
* [[PWY-5097]], L-lysine biosynthesis VI: [http://metacyc.org/META/NEW-IMAGE?object=PWY-5097 PWY-5097]
−
** '''31''' reactions found over '''31''' reactions in the full pathway
+
** '''7''' reactions found over '''7''' reactions in the full pathway
 +
* [[PWY-2942]], L-lysine biosynthesis III: [http://metacyc.org/META/NEW-IMAGE?object=PWY-2942 PWY-2942]
 +
** '''6''' reactions found over '''7''' reactions in the full pathway
 +
* [[DAPLYSINESYN-PWY]], L-lysine biosynthesis I: [http://metacyc.org/META/NEW-IMAGE?object=DAPLYSINESYN-PWY DAPLYSINESYN-PWY]
 +
** '''6''' reactions found over '''9''' reactions in the full pathway
 +
* [[PWY-2941]], L-lysine biosynthesis II: [http://metacyc.org/META/NEW-IMAGE?object=PWY-2941 PWY-2941]
 +
** '''6''' reactions found over '''9''' reactions in the full pathway
 
== Reconstruction information  ==
 
== Reconstruction information  ==
 +
* Category: [[orthology]]
 +
** Source: [[orthology-athaliana]]
 +
*** Tool: [[pantograph]]
 +
** Source: [[orthology-creinhardtii]]
 +
*** Tool: [[pantograph]]
 +
** Source: [[orthology-synechocystis]]
 +
*** Tool: [[pantograph]]
 +
** Source: [[orthology-esiliculosus]]
 +
*** Tool: [[pantograph]]
 
* Category: [[manual]]
 
* Category: [[manual]]
 
** Source: [[manual-primary_network]]
 
** Source: [[manual-primary_network]]
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*** Tool: [[pathwaytools]]
 
*** Tool: [[pathwaytools]]
 
== External links  ==
 
== External links  ==
 +
* RHEA:
 +
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=15101 15101]
 +
* LIGAND-RXN:
 +
** [http://www.genome.jp/dbget-bin/www_bget?R00451 R00451]
 +
* UNIPROT:
 +
** [http://www.uniprot.org/uniprot/P19572 P19572]
 +
** [http://www.uniprot.org/uniprot/P0A5M4 P0A5M4]
 +
** [http://www.uniprot.org/uniprot/P44316 P44316]
 +
** [http://www.uniprot.org/uniprot/P56129 P56129]
 +
** [http://www.uniprot.org/uniprot/O67262 O67262]
 +
** [http://www.uniprot.org/uniprot/Q9JWA6 Q9JWA6]
 +
** [http://www.uniprot.org/uniprot/Q9CG26 Q9CG26]
 +
** [http://www.uniprot.org/uniprot/P00861 P00861]
 +
** [http://www.uniprot.org/uniprot/O27390 O27390]
 +
** [http://www.uniprot.org/uniprot/Q9PII5 Q9PII5]
 +
** [http://www.uniprot.org/uniprot/Q58497 Q58497]
 +
** [http://www.uniprot.org/uniprot/O29458 O29458]
 +
** [http://www.uniprot.org/uniprot/P41023 P41023]
 +
** [http://www.uniprot.org/uniprot/P23630 P23630]
 +
** [http://www.uniprot.org/uniprot/P09890 P09890]
 +
** [http://www.uniprot.org/uniprot/Q55484 Q55484]
 +
** [http://www.uniprot.org/uniprot/O05321 O05321]
 
{{#set: direction=LEFT-TO-RIGHT}}
 
{{#set: direction=LEFT-TO-RIGHT}}
−
{{#set: common name=trans oct-2-enoyl-[acyl-carrier protein] reductase (NADPH, B-specific)}}
+
{{#set: common name=diaminopimelate_decarboxylase}}
−
{{#set: common name=polyketide_synthase}}
+
{{#set: ec number=EC-4.1.1.20}}
−
{{#set: ec number=EC-1.3.1.10}}
+
{{#set: gene associated=Tiso_gene_10737|Tiso_gene_12041}}
−
{{#set: ec number=EC-1.3.1.39}}
+
{{#set: in pathway=PWY-5097|PWY-2942|DAPLYSINESYN-PWY|PWY-2941}}
−
{{#set: ec number=EC-2.3.1.85}}
+
{{#set: reconstruction category=orthology|manual|annotation}}
−
{{#set: ec number=EC-2.3.1.86}}
+
{{#set: reconstruction source=orthology-esiliculosus|annotation-in-silico_annotation|orthology-athaliana|orthology-synechocystis|manual-primary_network|orthology-creinhardtii}}
−
{{#set: common name=trans oct-2-enoyl-ACP reductase|trans oct-2-enoyl acyl-carrier-protein reductase}}
+
{{#set: reconstruction tool=pantograph|pathwaytools}}
−
{{#set: gene associated=Tiso_gene_10876|Tiso_gene_136|Tiso_gene_135|Tiso_gene_500|Tiso_gene_13394}}
+
−
{{#set: in pathway=PWY-5994}}
+
−
{{#set: reconstruction category=manual|annotation}}
+
−
{{#set: reconstruction source=manual-primary_network|annotation-in-silico_annotation}}
+
−
{{#set: reconstruction tool=pathwaytools}}
+

Latest revision as of 20:56, 21 March 2018

Reaction DIAMINOPIMDECARB-RXN

  • direction:
    • LEFT-TO-RIGHT
  • common name:
    • diaminopimelate_decarboxylase
  • ec number:
  • Synonym(s):

Reaction Formula

Genes associated with this reaction

Genes have been associated with this reaction based on different elements listed below.

Pathways

  • PWY-5097, L-lysine biosynthesis VI: PWY-5097
    • 7 reactions found over 7 reactions in the full pathway
  • PWY-2942, L-lysine biosynthesis III: PWY-2942
    • 6 reactions found over 7 reactions in the full pathway
  • DAPLYSINESYN-PWY, L-lysine biosynthesis I: DAPLYSINESYN-PWY
    • 6 reactions found over 9 reactions in the full pathway
  • PWY-2941, L-lysine biosynthesis II: PWY-2941
    • 6 reactions found over 9 reactions in the full pathway

Reconstruction information

External links





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