Difference between revisions of "DNA-DIRECTED-DNA-POLYMERASE-RXN"

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(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-9648 RXN-9648] == * direction: ** LEFT-TO-RIGHT * common name: ** polyketide_synthase ** 3-oxoa...")
(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=3-HYDROXYBUTYRATE-DEHYDROGENASE-RXN 3-HYDROXYBUTYRATE-DEHYDROGENASE-RXN] == * direction: ** REVERSI...")
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[[Category:Reaction]]
 
[[Category:Reaction]]
−
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-9648 RXN-9648] ==
+
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=3-HYDROXYBUTYRATE-DEHYDROGENASE-RXN 3-HYDROXYBUTYRATE-DEHYDROGENASE-RXN] ==
 
* direction:
 
* direction:
−
** LEFT-TO-RIGHT
+
** REVERSIBLE
−
* common name:
+
−
** polyketide_synthase
+
−
** 3-oxoacyl-synthase
+
 
* ec number:
 
* ec number:
−
** [http://enzyme.expasy.org/EC/2.3.1.86 EC-2.3.1.86]
+
** [http://enzyme.expasy.org/EC/1.1.1.30 EC-1.1.1.30]
−
** [http://enzyme.expasy.org/EC/2.3.1.85 EC-2.3.1.85]
+
−
** [http://enzyme.expasy.org/EC/2.3.1.41 EC-2.3.1.41]
+
 
* Synonym(s):
 
* Synonym(s):
  
 
== Reaction Formula ==
 
== Reaction Formula ==
 
* With identifiers:
 
* With identifiers:
−
** 1 [[MALONYL-COA]][c] '''+''' 1 [[Butanoyl-ACPs]][c] '''+''' 1 [[PROTON]][c] '''=>''' 1 [[CO-A]][c] '''+''' 1 [[3-oxo-hexanoyl-ACPs]][c] '''+''' 1 [[CARBON-DIOXIDE]][c]
+
** 1 [[NAD]][c] '''+''' 1 [[CPD-335]][c] '''<=>''' 1 [[NADH]][c] '''+''' 1 [[PROTON]][c] '''+''' 1 [[3-KETOBUTYRATE]][c]
 
* With common name(s):
 
* With common name(s):
−
** 1 malonyl-CoA[c] '''+''' 1 a butyryl-[acp][c] '''+''' 1 H+[c] '''=>''' 1 coenzyme A[c] '''+''' 1 a 3-oxo-hexanoyl-[acp][c] '''+''' 1 CO2[c]
+
** 1 NAD+[c] '''+''' 1 (R)-3-hydroxybutanoate[c] '''<=>''' 1 NADH[c] '''+''' 1 H+[c] '''+''' 1 acetoacetate[c]
  
 
== Genes associated with this reaction  ==
 
== Genes associated with this reaction  ==
 
Genes have been associated with this reaction based on different elements listed below.
 
Genes have been associated with this reaction based on different elements listed below.
−
* [[Tiso_gene_14485]]
+
* [[Tiso_gene_7191]]
−
** [[pantograph]]-[[esiliculosus]]
+
** [[pantograph]]-[[creinhardtii]]
−
* [[Tiso_gene_136]]
+
* [[Tiso_gene_12472]]
−
** IN-SILICO_ANNOTATION
+
** [[pantograph]]-[[creinhardtii]]
−
***EC-NUMBER
+
−
* [[Tiso_gene_10876]]
+
−
** IN-SILICO_ANNOTATION
+
−
***EC-NUMBER
+
−
* [[Tiso_gene_500]]
+
−
** IN-SILICO_ANNOTATION
+
−
***EC-NUMBER
+
−
* [[Tiso_gene_19302]]
+
−
** [[pantograph]]-[[esiliculosus]]
+
−
* [[Tiso_gene_135]]
+
−
** IN-SILICO_ANNOTATION
+
−
***EC-NUMBER
+
−
* [[Tiso_gene_15991]]
+
−
** [[pantograph]]-[[esiliculosus]]
+
−
* [[Tiso_gene_5939]]
+
−
** IN-SILICO_ANNOTATION
+
−
***EC-NUMBER
+
−
** EXPERIMENTAL_ANNOTATION
+
−
***EC-NUMBER
+
−
* [[Tiso_gene_13394]]
+
−
** IN-SILICO_ANNOTATION
+
−
***EC-NUMBER
+
 
== Pathways  ==
 
== Pathways  ==
−
* [[PWY-5994]], palmitate biosynthesis I (animals and fungi): [http://metacyc.org/META/NEW-IMAGE?object=PWY-5994 PWY-5994]
+
* [[PWY66-367]], ketogenesis: [http://metacyc.org/META/NEW-IMAGE?object=PWY66-367 PWY66-367]
−
** '''31''' reactions found over '''31''' reactions in the full pathway
+
** '''5''' reactions found over '''5''' reactions in the full pathway
 +
* [[PWY66-368]], ketolysis: [http://metacyc.org/META/NEW-IMAGE?object=PWY66-368 PWY66-368]
 +
** '''3''' reactions found over '''3''' reactions in the full pathway
 
== Reconstruction information  ==
 
== Reconstruction information  ==
−
* [[orthology]]:
+
* Category: [[orthology]]
−
** [[pantograph]]:
+
** Source: [[orthology-creinhardtii]]
−
*** [[esiliculosus]]
+
*** Tool: [[pantograph]]
−
* [[annotation]]:
+
−
** [[pathwaytools]]:
+
−
*** [[experimental_annotation]]
+
−
*** [[in-silico_annotation]]
+
 
== External links  ==
 
== External links  ==
−
{{#set: direction=LEFT-TO-RIGHT}}
+
* RHEA:
−
{{#set: common name=polyketide_synthase}}
+
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=20521 20521]
−
{{#set: common name=3-oxoacyl-synthase}}
+
* LIGAND-RXN:
−
{{#set: ec number=EC-2.3.1.86}}
+
** [http://www.genome.jp/dbget-bin/www_bget?R01361 R01361]
−
{{#set: ec number=EC-2.3.1.85}}
+
* UNIPROT:
−
{{#set: ec number=EC-2.3.1.41}}
+
** [http://www.uniprot.org/uniprot/P29147 P29147]
−
{{#set: gene associated=Tiso_gene_14485|Tiso_gene_136|Tiso_gene_10876|Tiso_gene_500|Tiso_gene_19302|Tiso_gene_135|Tiso_gene_15991|Tiso_gene_5939|Tiso_gene_13394}}
+
** [http://www.uniprot.org/uniprot/Q02338 Q02338]
−
{{#set: in pathway=PWY-5994}}
+
** [http://www.uniprot.org/uniprot/Q02337 Q02337]
 +
{{#set: direction=REVERSIBLE}}
 +
{{#set: ec number=EC-1.1.1.30}}
 +
{{#set: gene associated=Tiso_gene_7191|Tiso_gene_12472}}
 +
{{#set: in pathway=PWY66-367|PWY66-368}}
 
{{#set: reconstruction category=orthology}}
 
{{#set: reconstruction category=orthology}}
 +
{{#set: reconstruction source=orthology-creinhardtii}}
 
{{#set: reconstruction tool=pantograph}}
 
{{#set: reconstruction tool=pantograph}}
−
{{#set: reconstruction source=esiliculosus}}
 
−
{{#set: reconstruction category=annotation}}
 
−
{{#set: reconstruction tool=pathwaytools}}
 
−
{{#set: reconstruction source=experimental_annotation|in-silico_annotation}}
 

Revision as of 19:41, 18 March 2018

Reaction 3-HYDROXYBUTYRATE-DEHYDROGENASE-RXN

  • direction:
    • REVERSIBLE
  • ec number:
  • Synonym(s):

Reaction Formula

  • With identifiers:
  • With common name(s):
    • 1 NAD+[c] + 1 (R)-3-hydroxybutanoate[c] <=> 1 NADH[c] + 1 H+[c] + 1 acetoacetate[c]

Genes associated with this reaction

Genes have been associated with this reaction based on different elements listed below.

Pathways

Reconstruction information

External links




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