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| | [[Category:Reaction]] | | [[Category:Reaction]] |
| − | == Reaction [http://metacyc.org/META/NEW-IMAGE?object=1.1.1.34-RXN 1.1.1.34-RXN] == | + | == Reaction [http://metacyc.org/META/NEW-IMAGE?object=ExchangeSeed_IODINE-MOLECULE ExchangeSeed_IODINE-MOLECULE] == |
| | * direction: | | * direction: |
| | ** REVERSIBLE | | ** REVERSIBLE |
| − | * common name:
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| − | ** ORF
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| − | ** mitochondrial_carrier_protein
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| − | * ec number:
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| − | ** [http://enzyme.expasy.org/EC/1.1.1.34 EC-1.1.1.34]
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| | * Synonym(s): | | * Synonym(s): |
| | | | |
| | == Reaction Formula == | | == Reaction Formula == |
| | * With identifiers: | | * With identifiers: |
| − | ** 2 [[NADP]][c] '''+''' 1 [[MEVALONATE]][c] '''+''' 1 [[CO-A]][c] '''<=>''' 1 [[3-HYDROXY-3-METHYL-GLUTARYL-COA]][c] '''+''' 2 [[NADPH]][c] '''+''' 2 [[PROTON]][c] | + | ** 1.0 [[IODINE-MOLECULE]][C-BOUNDARY] '''<=>''' 1.0 [[IODINE-MOLECULE]][e] |
| | * With common name(s): | | * With common name(s): |
| − | ** 2 NADP+[c] '''+''' 1 (R)-mevalonate[c] '''+''' 1 coenzyme A[c] '''<=>''' 1 (S)-3-hydroxy-3-methylglutaryl-CoA[c] '''+''' 2 NADPH[c] '''+''' 2 H+[c] | + | ** 1.0 I2[C-BOUNDARY] '''<=>''' 1.0 I2[e] |
| | | | |
| | == Genes associated with this reaction == | | == Genes associated with this reaction == |
| − | Genes have been associated with this reaction based on different elements listed below.
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| − | * [[Tiso_gene_16182]]
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| − | ** IN-SILICO_ANNOTATION
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| − | ***EC-NUMBER
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| − | * [[Tiso_gene_17889]]
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| − | ** IN-SILICO_ANNOTATION
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| − | ***EC-NUMBER
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| | == Pathways == | | == Pathways == |
| − | * [[PWY-922]], mevalonate pathway I: [http://metacyc.org/META/NEW-IMAGE?object=PWY-922 PWY-922]
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| − | ** '''6''' reactions found over '''7''' reactions in the full pathway
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| − | * [[PWY-6174]], mevalonate pathway II (archaea): [http://metacyc.org/META/NEW-IMAGE?object=PWY-6174 PWY-6174]
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| − | ** '''5''' reactions found over '''7''' reactions in the full pathway
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| − | * [[PWY-7391]], isoprene biosynthesis II (engineered): [http://metacyc.org/META/NEW-IMAGE?object=PWY-7391 PWY-7391]
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| − | ** '''6''' reactions found over '''8''' reactions in the full pathway
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| − | * [[PWY-7524]], mevalonate pathway III (archaea): [http://metacyc.org/META/NEW-IMAGE?object=PWY-7524 PWY-7524]
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| − | ** '''4''' reactions found over '''8''' reactions in the full pathway
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| | == Reconstruction information == | | == Reconstruction information == |
| − | * [[annotation]]: | + | * Category: [[manual]] |
| − | ** [[pathwaytools]]: | + | ** Source: [[manual-import_from_medium]] |
| − | *** [[in-silico_annotation]] | + | *** Comment: [[added to manage seeds from boundary to extracellular compartment]] |
| | == External links == | | == External links == |
| − | * RHEA:
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| − | ** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=15989 15989]
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| − | * LIGAND-RXN:
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| − | ** [http://www.genome.jp/dbget-bin/www_bget?R02082 R02082]
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| − | * UNIPROT:
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| − | ** [http://www.uniprot.org/uniprot/P16393 P16393]
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| − | ** [http://www.uniprot.org/uniprot/P14891 P14891]
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| − | ** [http://www.uniprot.org/uniprot/P16237 P16237]
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| − | ** [http://www.uniprot.org/uniprot/P20715 P20715]
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| − | ** [http://www.uniprot.org/uniprot/Q59468 Q59468]
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| − | ** [http://www.uniprot.org/uniprot/Q01237 Q01237]
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| − | ** [http://www.uniprot.org/uniprot/Q61671 Q61671]
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| − | ** [http://www.uniprot.org/uniprot/Q944T9 Q944T9]
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| − | ** [http://www.uniprot.org/uniprot/Q9S9C2 Q9S9C2]
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| − | ** [http://www.uniprot.org/uniprot/Q9S999 Q9S999]
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| − | ** [http://www.uniprot.org/uniprot/Q9S998 Q9S998]
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| − | ** [http://www.uniprot.org/uniprot/Q9S997 Q9S997]
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| − | ** [http://www.uniprot.org/uniprot/P04035 P04035]
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| − | ** [http://www.uniprot.org/uniprot/P00347 P00347]
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| − | ** [http://www.uniprot.org/uniprot/P29058 P29058]
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| − | ** [http://www.uniprot.org/uniprot/P29057 P29057]
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| − | ** [http://www.uniprot.org/uniprot/Q12577 Q12577]
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| − | ** [http://www.uniprot.org/uniprot/Q12649 Q12649]
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| − | ** [http://www.uniprot.org/uniprot/Q00583 Q00583]
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| − | ** [http://www.uniprot.org/uniprot/Q01559 Q01559]
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| − | ** [http://www.uniprot.org/uniprot/P48022 P48022]
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| − | ** [http://www.uniprot.org/uniprot/Q43825 Q43825]
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| − | ** [http://www.uniprot.org/uniprot/Q43826 Q43826]
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| − | ** [http://www.uniprot.org/uniprot/P14773 P14773]
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| − | ** [http://www.uniprot.org/uniprot/Q7M4W2 Q7M4W2]
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| − | ** [http://www.uniprot.org/uniprot/Q7M4W1 Q7M4W1]
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| − | ** [http://www.uniprot.org/uniprot/Q7M4W4 Q7M4W4]
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| − | ** [http://www.uniprot.org/uniprot/Q7M4W3 Q7M4W3]
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| − | ** [http://www.uniprot.org/uniprot/P48019 P48019]
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| − | ** [http://www.uniprot.org/uniprot/Q41454 Q41454]
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| − | ** [http://www.uniprot.org/uniprot/Q42506 Q42506]
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| − | ** [http://www.uniprot.org/uniprot/Q41455 Q41455]
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| − | ** [http://www.uniprot.org/uniprot/Q41456 Q41456]
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| − | ** [http://www.uniprot.org/uniprot/Q41458 Q41458]
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| − | ** [http://www.uniprot.org/uniprot/P48020 P48020]
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| − | ** [http://www.uniprot.org/uniprot/Q9FS01 Q9FS01]
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| − | ** [http://www.uniprot.org/uniprot/Q42466 Q42466]
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| − | ** [http://www.uniprot.org/uniprot/O48624 O48624]
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| − | ** [http://www.uniprot.org/uniprot/O04188 O04188]
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| − | ** [http://www.uniprot.org/uniprot/O24594 O24594]
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| − | ** [http://www.uniprot.org/uniprot/Q41438 Q41438]
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| − | ** [http://www.uniprot.org/uniprot/O64966 O64966]
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| − | ** [http://www.uniprot.org/uniprot/O64967 O64967]
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| − | ** [http://www.uniprot.org/uniprot/Q03163 Q03163]
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| − | ** [http://www.uniprot.org/uniprot/Q39628 Q39628]
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| − | ** [http://www.uniprot.org/uniprot/P93514 P93514]
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| − | ** [http://www.uniprot.org/uniprot/O08424 O08424]
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| | {{#set: direction=REVERSIBLE}} | | {{#set: direction=REVERSIBLE}} |
| − | {{#set: common name=ORF}}
| + | {{#set: in pathway=}} |
| − | {{#set: common name=mitochondrial_carrier_protein}}
| + | {{#set: reconstruction category=manual}} |
| − | {{#set: ec number=EC-1.1.1.34}}
| + | {{#set: reconstruction source=manual-import_from_medium}} |
| − | {{#set: gene associated=Tiso_gene_16182|Tiso_gene_17889}}
| + | {{#set: reconstruction comment=added to manage seeds from boundary to extracellular compartment}} |
| − | {{#set: in pathway=PWY-922|PWY-6174|PWY-7391|PWY-7524}} | + | |
| − | {{#set: reconstruction category=annotation}} | + | |
| − | {{#set: reconstruction tool=pathwaytools}} | + | |
| − | {{#set: reconstruction source=in-silico_annotation}} | + | |
