Difference between revisions of "ExchangeSeed NA+"

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(Created page with "Category:Gene == Gene Tiso_gene_19933 == * left end position: ** 15 * transcription direction: ** NEGATIVE * right end position: ** 1430 * centisome position: ** 0.7857517...")
 
(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=RIBULP3EPIM-RXN RIBULP3EPIM-RXN] == * direction: ** REVERSIBLE * common name: ** ribulose-phosphate...")
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[[Category:Gene]]
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[[Category:Reaction]]
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== Gene Tiso_gene_19933 ==
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== Reaction [http://metacyc.org/META/NEW-IMAGE?object=RIBULP3EPIM-RXN RIBULP3EPIM-RXN] ==
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* left end position:
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* direction:
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** 15
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** REVERSIBLE
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* transcription direction:
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* common name:
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** NEGATIVE
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** ribulose-phosphate_-3_chloroplastic
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* right end position:
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* ec number:
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** 1430
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** [http://enzyme.expasy.org/EC/5.1.3.1 EC-5.1.3.1]
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* centisome position:
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** 0.78575176   
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* Synonym(s):
 
* Synonym(s):
  
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== Reactions associated ==
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== Reaction Formula ==
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* [[FUMARATE-REDUCTASE-NADH-RXN]]
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* With identifiers:
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** in-silico_annotation
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** 1 [[RIBULOSE-5P]][c] '''<=>''' 1 [[XYLULOSE-5-PHOSPHATE]][c]
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***ec-number
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* With common name(s):
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== Pathways associated ==
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** 1 D-ribulose 5-phosphate[c] '''<=>''' 1 D-xylulose 5-phosphate[c]
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== Genes associated with this reaction  ==
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Genes have been associated with this reaction based on different elements listed below.
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* [[Tiso_gene_10879]]
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** EXPERIMENTAL_ANNOTATION
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***EC-NUMBER
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** [[pantograph]]-[[athaliana]]
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** [[pantograph]]-[[athaliana]]
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** [[pantograph]]-[[esiliculosus]]
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** [[pantograph]]-[[creinhardtii]]
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* [[Tiso_gene_19140]]
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** EXPERIMENTAL_ANNOTATION
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***EC-NUMBER
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** [[pantograph]]-[[synechocystis]]
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** [[pantograph]]-[[esiliculosus]]
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* [[Tiso_gene_4754]]
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** IN-SILICO_ANNOTATION
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***EC-NUMBER
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** EXPERIMENTAL_ANNOTATION
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***EC-NUMBER
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** [[pantograph]]-[[athaliana]]
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** [[pantograph]]-[[athaliana]]
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** [[pantograph]]-[[creinhardtii]]
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== Pathways ==
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* [[P124-PWY]], Bifidobacterium shunt: [http://metacyc.org/META/NEW-IMAGE?object=P124-PWY P124-PWY]
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** '''11''' reactions found over '''15''' reactions in the full pathway
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* [[CALVIN-PWY]], Calvin-Benson-Bassham cycle: [http://metacyc.org/META/NEW-IMAGE?object=CALVIN-PWY CALVIN-PWY]
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** '''13''' reactions found over '''13''' reactions in the full pathway
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* [[P21-PWY]], pentose phosphate pathway (partial): [http://metacyc.org/META/NEW-IMAGE?object=P21-PWY P21-PWY]
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** '''3''' reactions found over '''3''' reactions in the full pathway
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* [[PWY-5723]], Rubisco shunt: [http://metacyc.org/META/NEW-IMAGE?object=PWY-5723 PWY-5723]
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** '''10''' reactions found over '''10''' reactions in the full pathway
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* [[PWY-1861]], formaldehyde assimilation II (RuMP Cycle): [http://metacyc.org/META/NEW-IMAGE?object=PWY-1861 PWY-1861]
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** '''7''' reactions found over '''9''' reactions in the full pathway
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* [[P122-PWY]], heterolactic fermentation: [http://metacyc.org/META/NEW-IMAGE?object=P122-PWY P122-PWY]
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** '''14''' reactions found over '''18''' reactions in the full pathway
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* [[P185-PWY]], formaldehyde assimilation III (dihydroxyacetone cycle): [http://metacyc.org/META/NEW-IMAGE?object=P185-PWY P185-PWY]
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** '''11''' reactions found over '''12''' reactions in the full pathway
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* [[NONOXIPENT-PWY]], pentose phosphate pathway (non-oxidative branch): [http://metacyc.org/META/NEW-IMAGE?object=NONOXIPENT-PWY NONOXIPENT-PWY]
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** '''5''' reactions found over '''5''' reactions in the full pathway
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== Reconstruction information  ==
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* [[orthology]]:
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** [[pantograph]]:
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*** [[creinhardtii]]
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*** [[synechocystis]]
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*** [[esiliculosus]]
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*** [[athaliana]]
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* [[manual]]:
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** [[primary_network]]
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* [[annotation]]:
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** [[pathwaytools]]:
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*** [[experimental_annotation]]
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*** [[in-silico_annotation]]
 
== External links  ==
 
== External links  ==
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{{#set: left end position=15}}
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* RHEA:
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{{#set: transcription direction=NEGATIVE}}
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** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=13677 13677]
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{{#set: right end position=1430}}
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* LIGAND-RXN:
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{{#set: centisome position=0.78575176    }}
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** [http://www.genome.jp/dbget-bin/www_bget?R01529 R01529]
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{{#set: reaction associated=FUMARATE-REDUCTASE-NADH-RXN}}
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* UNIPROT:
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** [http://www.uniprot.org/uniprot/P40117 P40117]
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** [http://www.uniprot.org/uniprot/Q9CEB9 Q9CEB9]
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** [http://www.uniprot.org/uniprot/P0AG07 P0AG07]
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** [http://www.uniprot.org/uniprot/Q9PI57 Q9PI57]
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** [http://www.uniprot.org/uniprot/Q9JUA9 Q9JUA9]
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** [http://www.uniprot.org/uniprot/P45455 P45455]
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** [http://www.uniprot.org/uniprot/Q43157 Q43157]
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** [http://www.uniprot.org/uniprot/Q43843 Q43843]
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** [http://www.uniprot.org/uniprot/P74061 P74061]
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** [http://www.uniprot.org/uniprot/O23782 O23782]
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** [http://www.uniprot.org/uniprot/P51012 P51012]
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{{#set: direction=REVERSIBLE}}
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{{#set: common name=ribulose-phosphate_-3_chloroplastic}}
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{{#set: ec number=EC-5.1.3.1}}
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{{#set: gene associated=Tiso_gene_10879|Tiso_gene_19140|Tiso_gene_4754}}
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{{#set: in pathway=P124-PWY|CALVIN-PWY|P21-PWY|PWY-5723|PWY-1861|P122-PWY|P185-PWY|NONOXIPENT-PWY}}
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{{#set: reconstruction category=orthology}}
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{{#set: reconstruction tool=pantograph}}
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{{#set: reconstruction source=creinhardtii|synechocystis|esiliculosus|athaliana}}
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{{#set: reconstruction category=manual}}
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{{#set: reconstruction source=primary_network}}
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{{#set: reconstruction category=annotation}}
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{{#set: reconstruction tool=pathwaytools}}
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{{#set: reconstruction source=experimental_annotation|in-silico_annotation}}

Revision as of 18:22, 10 January 2018

Reaction RIBULP3EPIM-RXN

  • direction:
    • REVERSIBLE
  • common name:
    • ribulose-phosphate_-3_chloroplastic
  • ec number:
  • Synonym(s):

Reaction Formula

Genes associated with this reaction

Genes have been associated with this reaction based on different elements listed below.

Pathways

  • P124-PWY, Bifidobacterium shunt: P124-PWY
    • 11 reactions found over 15 reactions in the full pathway
  • CALVIN-PWY, Calvin-Benson-Bassham cycle: CALVIN-PWY
    • 13 reactions found over 13 reactions in the full pathway
  • P21-PWY, pentose phosphate pathway (partial): P21-PWY
    • 3 reactions found over 3 reactions in the full pathway
  • PWY-5723, Rubisco shunt: PWY-5723
    • 10 reactions found over 10 reactions in the full pathway
  • PWY-1861, formaldehyde assimilation II (RuMP Cycle): PWY-1861
    • 7 reactions found over 9 reactions in the full pathway
  • P122-PWY, heterolactic fermentation: P122-PWY
    • 14 reactions found over 18 reactions in the full pathway
  • P185-PWY, formaldehyde assimilation III (dihydroxyacetone cycle): P185-PWY
    • 11 reactions found over 12 reactions in the full pathway
  • NONOXIPENT-PWY, pentose phosphate pathway (non-oxidative branch): NONOXIPENT-PWY
    • 5 reactions found over 5 reactions in the full pathway

Reconstruction information

External links







Retrieved from "http://gem-aureme.irisa.fr/tisogem/index.php?title=ExchangeSeed_NA%2B&oldid=17518"